RNA–Protein interactions for RNA: ENST00000479161.5

C9orf3-217, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 942 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-217ENST00000479161 NISCHQ9Y2I1 1504 aa37.62■■■■□ 3.61
C9orf3-217ENST00000479161 CCDC180Q9P1Z9 1646 aa33.5■■■□□ 2.95
C9orf3-217ENST00000479161 ABCC9O60706 1549 aa32.52■■■□□ 2.8
C9orf3-217ENST00000479161 NACADO15069 1562 aa31.48■■■□□ 2.63
C9orf3-217ENST00000479161 RB1CC1Q8TDY2 1594 aa31.46■■■□□ 2.63
C9orf3-217ENST00000479161 MYO15BQ96JP2 1530 aa31.42■■■□□ 2.62
C9orf3-217ENST00000479161 ZCCHC6Q5VYS8 1495 aaKnown RBP31.34■■■□□ 2.61
C9orf3-217ENST00000479161 DCAF1Q9Y4B6 1507 aa31.26■■■□□ 2.59
C9orf3-217ENST00000479161 DCAF8L2P0C7V8 631 aa31.19■■■□□ 2.58
C9orf3-217ENST00000479161 UNC13AQ9UPW8 1703 aa30.71■■■□□ 2.51
C9orf3-217ENST00000479161 BICRAQ9NZM4 1560 aa30.47■■■□□ 2.47
C9orf3-217ENST00000479161 PABPN1Q86U42 306 aaKnown RBP eCLIP30.36■■■□□ 2.45
C9orf3-217ENST00000479161 SCRIBQ14160 1630 aa30.36■■■□□ 2.45
C9orf3-217ENST00000479161 SHROOM4Q9ULL8 1493 aa30.33■■■□□ 2.45
C9orf3-217ENST00000479161 DNAJC5BQ9UF47 199 aa30.17■■■□□ 2.42
C9orf3-217ENST00000479161 EIF4G1Q04637 1599 aaKnown RBP29.66■■■□□ 2.34
C9orf3-217ENST00000479161 CC2D2AQ9P2K1 1620 aa29.5■■■□□ 2.31
C9orf3-217ENST00000479161 CECR2Q9BXF3 1484 aa29.29■■■□□ 2.28
C9orf3-217ENST00000479161 BAZ1AQ9NRL2 1556 aaPredicted RBP29.17■■■□□ 2.26
C9orf3-217ENST00000479161 SMARCA4P51532 1647 aa29.16■■■□□ 2.26
C9orf3-217ENST00000479161 NCAPD3P42695 1498 aa29.05■■■□□ 2.24
C9orf3-217ENST00000479161 SMARCA2P51531 1590 aa29.01■■■□□ 2.24
C9orf3-217ENST00000479161 ATAD2BQ9ULI0 1458 aa29■■■□□ 2.23
C9orf3-217ENST00000479161 PEG3Q9GZU2 1588 aa28.98■■■□□ 2.23
C9orf3-217ENST00000479161 MROH2BQ7Z745 1585 aa28.92■■■□□ 2.22
C9orf3-217ENST00000479161 HMGXB3Q12766 1538 aa28.89■■■□□ 2.22
C9orf3-217ENST00000479161 BAZ1BQ9UIG0 1483 aaKnown RBP28.73■■■□□ 2.19
C9orf3-217ENST00000479161 RSF1Q96T23 1441 aaPredicted RBP28.65■■■□□ 2.18
C9orf3-217ENST00000479161 WIZO95785 1651 aa28.59■■■□□ 2.17
C9orf3-217ENST00000479161 TOP2AP11388 1531 aaKnown RBP28.36■■■□□ 2.13
C9orf3-217ENST00000479161 LAMC3Q9Y6N6 1575 aa28.26■■■□□ 2.11
C9orf3-217ENST00000479161 NESP48681 1621 aa28.15■■■□□ 2.1
C9orf3-217ENST00000479161 CADPSQ9ULU8 1353 aa28.15■■■□□ 2.1
C9orf3-217ENST00000479161 ERCC6Q03468 1493 aa28.06■■■□□ 2.08
C9orf3-217ENST00000479161 PDS5BQ9NTI5 1447 aa28.05■■■□□ 2.08
C9orf3-217ENST00000479161 CFTRP13569 1480 aa28.02■■■□□ 2.08
C9orf3-217ENST00000479161 CCDC88BA6NC98 1476 aa28■■■□□ 2.07
C9orf3-217ENST00000479161 CUX2O14529 1486 aa27.89■■■□□ 2.05
C9orf3-217ENST00000479161 KIF21AQ7Z4S6 1674 aa27.87■■■□□ 2.05
C9orf3-217ENST00000479161 PRDM2Q13029 1718 aa27.83■■■□□ 2.05
C9orf3-217ENST00000479161 THOC2Q8NI27 1593 aaKnown RBP27.81■■■□□ 2.04
C9orf3-217ENST00000479161 FANCD2Q9BXW9 1451 aa27.78■■■□□ 2.04
C9orf3-217ENST00000479161 DNAJC5Q9H3Z4 198 aa27.78■■■□□ 2.04
C9orf3-217ENST00000479161 SUPT5HO00267 1087 aaKnown RBP27.77■■■□□ 2.04
C9orf3-217ENST00000479161 CEP164Q9UPV0 1460 aa27.75■■■□□ 2.03
C9orf3-217ENST00000479161 MRC2Q9UBG0 1479 aa27.71■■■□□ 2.03
C9orf3-217ENST00000479161 WDR62O43379 1518 aa27.65■■■□□ 2.02
C9orf3-217ENST00000479161 ABCC8Q09428 1581 aa27.48■■□□□ 1.99
C9orf3-217ENST00000479161 URB2Q14146 1524 aaKnown RBP27.48■■□□□ 1.99
C9orf3-217ENST00000479161 TOPBP1Q92547 1522 aa27.35■■□□□ 1.97
C9orf3-217ENST00000479161 DNMBPQ6XZF7 1577 aa27.35■■□□□ 1.97
C9orf3-217ENST00000479161 IFT140Q96RY7 1462 aa27.2■■□□□ 1.95
C9orf3-217ENST00000479161 CUX1P39880 1505 aa27.14■■□□□ 1.94
C9orf3-217ENST00000479161 POLA1P09884 1462 aaPredicted RBP27.12■■□□□ 1.93
C9orf3-217ENST00000479161 TARBP1Q13395 1621 aaKnown RBP27.08■■□□□ 1.93
C9orf3-217ENST00000479161 FGD5Q6ZNL6 1462 aa27.03■■□□□ 1.92
C9orf3-217ENST00000479161 SOGA1O94964 1423 aa27.01■■□□□ 1.91
C9orf3-217ENST00000479161 WRNQ14191 1432 aaPredicted RBP eCLIP26.99■■□□□ 1.91
C9orf3-217ENST00000479161 WDR97A6NE52 1622 aa26.99■■□□□ 1.91
C9orf3-217ENST00000479161 ZNF608Q9ULD9 1512 aaPredicted RBP26.98■■□□□ 1.91
C9orf3-217ENST00000479161 TOP2BQ02880 1626 aa26.98■■□□□ 1.91
C9orf3-217ENST00000479161 BIVM-ERCC5R4GMW8 1640 aa26.98■■□□□ 1.91
C9orf3-217ENST00000479161 RAD54L2Q9Y4B4 1467 aa26.93■■□□□ 1.9
C9orf3-217ENST00000479161 EIF4G3O43432 1585 aaKnown RBP26.91■■□□□ 1.9
C9orf3-217ENST00000479161 SYNJ1O43426 1573 aa26.88■■□□□ 1.89
C9orf3-217ENST00000479161 ABCA10Q8WWZ4 1543 aa26.85■■□□□ 1.89
C9orf3-217ENST00000479161 AQRO60306 1485 aaKnown RBP eCLIP26.83■■□□□ 1.896e-7■■■□□ 16.6
C9orf3-217ENST00000479161 TDRD9Q8NDG6 1382 aaKnown RBP26.79■■□□□ 1.88
C9orf3-217ENST00000479161 GRIN2BQ13224 1484 aa26.72■■□□□ 1.87
C9orf3-217ENST00000479161 ABCA5Q8WWZ7 1642 aa26.71■■□□□ 1.87
C9orf3-217ENST00000479161 GAPVD1Q14C86 1478 aa26.7■■□□□ 1.87
C9orf3-217ENST00000479161 OSCARQ8IYS5 282 aa26.69■■□□□ 1.86
C9orf3-217ENST00000479161 MAGI1Q96QZ7 1491 aaPredicted RBP26.68■■□□□ 1.86
C9orf3-217ENST00000479161 PBRM1Q86U86 1689 aa26.63■■□□□ 1.85
C9orf3-217ENST00000479161 SNAPC4Q5SXM2 1469 aa26.6■■□□□ 1.85
C9orf3-217ENST00000479161 CHD1O14646 1710 aa26.56■■□□□ 1.84
C9orf3-217ENST00000479161 ERICH3Q5RHP9 1530 aa26.55■■□□□ 1.84
C9orf3-217ENST00000479161 SYNJ2O15056 1496 aa26.55■■□□□ 1.84
C9orf3-217ENST00000479161 CHMP7Q8WUX9 453 aaPredicted RBP26.47■■□□□ 1.83
C9orf3-217ENST00000479161 KIF27Q86VH2 1401 aa26.46■■□□□ 1.83
C9orf3-217ENST00000479161 FHAD1B1AJZ9 1412 aa26.43■■□□□ 1.82
C9orf3-217ENST00000479161 FBLN2P98095 1184 aa26.43■■□□□ 1.82
C9orf3-217ENST00000479161 ADAMTS12P58397 1594 aa26.42■■□□□ 1.82
C9orf3-217ENST00000479161 TRIM41Q8WV44 630 aa26.36■■□□□ 1.81
C9orf3-217ENST00000479161 GRIN2AQ12879 1464 aa26.36■■□□□ 1.81
C9orf3-217ENST00000479161 IGF1RP08069 1367 aa26.35■■□□□ 1.81
C9orf3-217ENST00000479161 CLASP1Q7Z460 1538 aa26.33■■□□□ 1.81
C9orf3-217ENST00000479161 CUL7Q14999 1698 aa26.3■■□□□ 1.8
C9orf3-217ENST00000479161 NUP160Q12769 1436 aa26.28■■□□□ 1.8
C9orf3-217ENST00000479161 ARHGEF11O15085 1522 aa26.22■■□□□ 1.79
C9orf3-217ENST00000479161 RIMBP3CA6NJZ7 1639 aa26.2■■□□□ 1.78
C9orf3-217ENST00000479161 RIMBP3BA6NNM3 1639 aa26.2■■□□□ 1.78
C9orf3-217ENST00000479161 RIMBP3Q9UFD9 1639 aa26.2■■□□□ 1.78
C9orf3-217ENST00000479161 CEP170Q5SW79 1584 aa26.19■■□□□ 1.78
C9orf3-217ENST00000479161 CARMIL1Q5VZK9 1371 aa26.17■■□□□ 1.78
C9orf3-217ENST00000479161 RUSC2Q8N2Y8 1516 aa26.11■■□□□ 1.77
C9orf3-217ENST00000479161 SHROOM2Q13796 1616 aa26.08■■□□□ 1.77
C9orf3-217ENST00000479161 CHIC1Q5VXU3 224 aa26.05■■□□□ 1.76
C9orf3-217ENST00000479161 EEA1Q15075 1411 aa26.05■■□□□ 1.76
C9orf3-217ENST00000479161 KIAA0586Q9BVV6 1533 aa26.04■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms