RNA–Protein interactions for RNA: ENST00000375315.6

C9orf3-203, Transcript of chromosome 9 open reading frame 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf3, Length 3,136 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-203ENST00000375315 NISCHQ9Y2I1 1504 aa25.14■■□□□ 1.61
C9orf3-203ENST00000375315 DCAF8L2P0C7V8 631 aa21.8■■□□□ 1.08
C9orf3-203ENST00000375315 CCDC180Q9P1Z9 1646 aa21.49■■□□□ 1.03
C9orf3-203ENST00000375315 SHROOM4Q9ULL8 1493 aa21.43■■□□□ 1.02
C9orf3-203ENST00000375315 ABCC9O60706 1549 aa21.09■□□□□ 0.97
C9orf3-203ENST00000375315 ZCCHC6Q5VYS8 1495 aaKnown RBP21.04■□□□□ 0.96
C9orf3-203ENST00000375315 SUPT5HO00267 1087 aaKnown RBP20.7■□□□□ 0.9
C9orf3-203ENST00000375315 SCRIBQ14160 1630 aa20.39■□□□□ 0.85
C9orf3-203ENST00000375315 PELP1Q8IZL8 1130 aaKnown RBP20.39■□□□□ 0.85
C9orf3-203ENST00000375315 DCAF1Q9Y4B6 1507 aa20.39■□□□□ 0.85
C9orf3-203ENST00000375315 HRCP23327 699 aa20.38■□□□□ 0.85
C9orf3-203ENST00000375315 PABPN1Q86U42 306 aaKnown RBP eCLIP20.18■□□□□ 0.82
C9orf3-203ENST00000375315 NACADO15069 1562 aa20.17■□□□□ 0.82
C9orf3-203ENST00000375315 RB1CC1Q8TDY2 1594 aa20.09■□□□□ 0.81
C9orf3-203ENST00000375315 MYO15BQ96JP2 1530 aa20.03■□□□□ 0.8
C9orf3-203ENST00000375315 CECR2Q9BXF3 1484 aa19.83■□□□□ 0.77
C9orf3-203ENST00000375315 MYT1Q01538 1121 aa19.79■□□□□ 0.76
C9orf3-203ENST00000375315 PPARGC1BQ86YN6 1023 aaKnown RBP19.78■□□□□ 0.76
C9orf3-203ENST00000375315 PCGF6Q9BYE7 350 aa19.72■□□□□ 0.75
C9orf3-203ENST00000375315 RSF1Q96T23 1441 aaPredicted RBP19.69■□□□□ 0.74
C9orf3-203ENST00000375315 UNC13AQ9UPW8 1703 aa19.64■□□□□ 0.73
C9orf3-203ENST00000375315 MROH2BQ7Z745 1585 aa19.6■□□□□ 0.73
C9orf3-203ENST00000375315 BICRAQ9NZM4 1560 aa19.51■□□□□ 0.71
C9orf3-203ENST00000375315 CHIC1Q5VXU3 224 aa19.49■□□□□ 0.71
C9orf3-203ENST00000375315 WIZO95785 1651 aa19.44■□□□□ 0.7
C9orf3-203ENST00000375315 SCAF1Q9H7N4 1312 aaKnown RBP19.41■□□□□ 0.7
C9orf3-203ENST00000375315 BAZ1AQ9NRL2 1556 aaPredicted RBP19.35■□□□□ 0.69
C9orf3-203ENST00000375315 EHMT2Q96KQ7 1210 aa19.31■□□□□ 0.68
C9orf3-203ENST00000375315 SMARCA4P51532 1647 aa19.27■□□□□ 0.68
C9orf3-203ENST00000375315 FAM9AQ8IZU1 332 aaPredicted RBP19.25■□□□□ 0.67
C9orf3-203ENST00000375315 TRIM41Q8WV44 630 aa19.2■□□□□ 0.66
C9orf3-203ENST00000375315 ZEB1P37275 1124 aaPredicted RBP19.16■□□□□ 0.66
C9orf3-203ENST00000375315 LOC105371045A0A1W2PR82 267 aa19.09■□□□□ 0.65
C9orf3-203ENST00000375315 TRIM26Q12899 539 aaPredicted RBP19.09■□□□□ 0.65
C9orf3-203ENST00000375315 CCDC88BA6NC98 1476 aa19.06■□□□□ 0.64
C9orf3-203ENST00000375315 ATAD2BQ9ULI0 1458 aa19.04■□□□□ 0.64
C9orf3-203ENST00000375315 BAZ1BQ9UIG0 1483 aaKnown RBP19.02■□□□□ 0.63
C9orf3-203ENST00000375315 TOP2AP11388 1531 aaKnown RBP19.01■□□□□ 0.63
C9orf3-203ENST00000375315 EIF4G1Q04637 1599 aaKnown RBP19■□□□□ 0.63
C9orf3-203ENST00000375315 SMARCA2P51531 1590 aa18.91■□□□□ 0.62
C9orf3-203ENST00000375315 ACIN1Q9UKV3 1341 aaKnown RBP18.91■□□□□ 0.62
C9orf3-203ENST00000375315 DNAJC5BQ9UF47 199 aa18.86■□□□□ 0.61
C9orf3-203ENST00000375315 ABCC8Q09428 1581 aa18.85■□□□□ 0.61
C9orf3-203ENST00000375315 NEUROD1Q13562 356 aa18.76■□□□□ 0.59
C9orf3-203ENST00000375315 CC2D2AQ9P2K1 1620 aa18.76■□□□□ 0.59
C9orf3-203ENST00000375315 PEG3Q9GZU2 1588 aa18.75■□□□□ 0.59
C9orf3-203ENST00000375315 NCAPD3P42695 1498 aa18.73■□□□□ 0.59
C9orf3-203ENST00000375315 GTF3C3Q9Y5Q9 886 aa18.73■□□□□ 0.59
C9orf3-203ENST00000375315 CENPBP07199 599 aaPredicted RBP18.72■□□□□ 0.59
C9orf3-203ENST00000375315 TTBK1Q5TCY1 1321 aaPredicted RBP18.68■□□□□ 0.58
C9orf3-203ENST00000375315 RANGAP1P46060 587 aaPredicted RBP18.6■□□□□ 0.57
C9orf3-203ENST00000375315 WRNQ14191 1432 aaPredicted RBP eCLIP18.58■□□□□ 0.57
C9orf3-203ENST00000375315 HMGXB3Q12766 1538 aa18.57■□□□□ 0.56
C9orf3-203ENST00000375315 SOGA1O94964 1423 aa18.56■□□□□ 0.56
C9orf3-203ENST00000375315 RUSC2Q8N2Y8 1516 aa18.51■□□□□ 0.55
C9orf3-203ENST00000375315 NESP48681 1621 aa18.5■□□□□ 0.55
C9orf3-203ENST00000375315 UBTFP17480 764 aaKnown RBP18.49■□□□□ 0.55
C9orf3-203ENST00000375315 CADPSQ9ULU8 1353 aa18.45■□□□□ 0.54
C9orf3-203ENST00000375315 CSRNP3Q8WYN3 585 aa18.43■□□□□ 0.54
C9orf3-203ENST00000375315 SYNJ1O43426 1573 aa18.42■□□□□ 0.54
C9orf3-203ENST00000375315 CFTRP13569 1480 aa18.4■□□□□ 0.54
C9orf3-203ENST00000375315 DIEXFQ68CQ4 756 aaKnown RBP18.38■□□□□ 0.53
C9orf3-203ENST00000375315 FANCD2Q9BXW9 1451 aa18.28■□□□□ 0.52
C9orf3-203ENST00000375315 CUX1P39880 1505 aa18.26■□□□□ 0.51
C9orf3-203ENST00000375315 BCL11AQ9H165 835 aa18.23■□□□□ 0.51
C9orf3-203ENST00000375315 CCER1Q8TC90 406 aaPredicted RBP18.2■□□□□ 0.5
C9orf3-203ENST00000375315 TOP2BQ02880 1626 aa18.16■□□□□ 0.5
C9orf3-203ENST00000375315 RAD54L2Q9Y4B4 1467 aa18.14■□□□□ 0.49
C9orf3-203ENST00000375315 CUX2O14529 1486 aa18.13■□□□□ 0.49
C9orf3-203ENST00000375315 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.13■□□□□ 0.49
C9orf3-203ENST00000375315 FGD5Q6ZNL6 1462 aa18.12■□□□□ 0.49
C9orf3-203ENST00000375315 CEP164Q9UPV0 1460 aa18.11■□□□□ 0.49
C9orf3-203ENST00000375315 PDS5BQ9NTI5 1447 aa18.1■□□□□ 0.49
C9orf3-203ENST00000375315 RAPGEF2Q9Y4G8 1499 aa18.09■□□□□ 0.49
C9orf3-203ENST00000375315 EEA1Q15075 1411 aa18.08■□□□□ 0.48
C9orf3-203ENST00000375315 TDRD9Q8NDG6 1382 aaKnown RBP18.07■□□□□ 0.48
C9orf3-203ENST00000375315 KIF27Q86VH2 1401 aa18.07■□□□□ 0.48
C9orf3-203ENST00000375315 ANP32EQ9BTT0 268 aa18.05■□□□□ 0.48
C9orf3-203ENST00000375315 CEP162Q5TB80 1403 aa18.05■□□□□ 0.48
C9orf3-203ENST00000375315 YTHDC1Q96MU7 727 aaKnown RBP18.05■□□□□ 0.48
C9orf3-203ENST00000375315 GOLGA3Q08378 1498 aa18.04■□□□□ 0.48
C9orf3-203ENST00000375315 TOPBP1Q92547 1522 aa18.02■□□□□ 0.48
C9orf3-203ENST00000375315 BIVM-ERCC5R4GMW8 1640 aa18.02■□□□□ 0.48
C9orf3-203ENST00000375315 P3H3Q8IVL6 736 aa18.02■□□□□ 0.48
C9orf3-203ENST00000375315 ERCC6Q03468 1493 aa18.02■□□□□ 0.47
C9orf3-203ENST00000375315 LAMC3Q9Y6N6 1575 aa18.01■□□□□ 0.47
C9orf3-203ENST00000375315 URB2Q14146 1524 aaKnown RBP18.01■□□□□ 0.47
C9orf3-203ENST00000375315 TNIKQ9UKE5 1360 aa17.99■□□□□ 0.47
C9orf3-203ENST00000375315 POLA1P09884 1462 aaPredicted RBP17.99■□□□□ 0.47
C9orf3-203ENST00000375315 ZNF316A6NFI3 1004 aaPredicted RBP17.96■□□□□ 0.47
C9orf3-203ENST00000375315 ATP1B4Q9UN42 357 aaPredicted RBP17.96■□□□□ 0.47
C9orf3-203ENST00000375315 KIF21AQ7Z4S6 1674 aa17.96■□□□□ 0.47
C9orf3-203ENST00000375315 IGF1RP08069 1367 aa17.96■□□□□ 0.46
C9orf3-203ENST00000375315 PRDM2Q13029 1718 aa17.93■□□□□ 0.46
C9orf3-203ENST00000375315 CARMIL1Q5VZK9 1371 aa17.92■□□□□ 0.46
C9orf3-203ENST00000375315 CLIP1P30622 1438 aa17.92■□□□□ 0.46
C9orf3-203ENST00000375315 DNMBPQ6XZF7 1577 aa17.91■□□□□ 0.46
C9orf3-203ENST00000375315 CLSPNQ9HAW4 1339 aa17.91■□□□□ 0.46
C9orf3-203ENST00000375315 FBLN2P98095 1184 aa17.9■□□□□ 0.46
C9orf3-203ENST00000375315 APLP2Q06481 763 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms