RNA–Protein interactions for RNA: ENST00000428313.5

C9orf3-206, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best)

Gene C9orf3, Length 2,288 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-206ENST00000428313 NISCHQ9Y2I1 1504 aa30.02■■■□□ 2.4
C9orf3-206ENST00000428313 HRCP23327 699 aa27.42■■□□□ 1.98
C9orf3-206ENST00000428313 PELP1Q8IZL8 1130 aaKnown RBP27.33■■□□□ 1.97
C9orf3-206ENST00000428313 PPARGC1BQ86YN6 1023 aaKnown RBP26.5■■□□□ 1.83
C9orf3-206ENST00000428313 MYT1Q01538 1121 aa26.5■■□□□ 1.83
C9orf3-206ENST00000428313 PCGF6Q9BYE7 350 aa26.41■■□□□ 1.82
C9orf3-206ENST00000428313 MYO15BQ96JP2 1530 aa26.25■■□□□ 1.79
C9orf3-206ENST00000428313 DCAF1Q9Y4B6 1507 aa26.09■■□□□ 1.77
C9orf3-206ENST00000428313 SCAF1Q9H7N4 1312 aaKnown RBP26.05■■□□□ 1.76
C9orf3-206ENST00000428313 SUPT5HO00267 1087 aaKnown RBP25.98■■□□□ 1.75
C9orf3-206ENST00000428313 CHIC1Q5VXU3 224 aa25.97■■□□□ 1.75
C9orf3-206ENST00000428313 CCDC180Q9P1Z9 1646 aa25.9■■□□□ 1.74
C9orf3-206ENST00000428313 SHROOM4Q9ULL8 1493 aa25.89■■□□□ 1.74
C9orf3-206ENST00000428313 ZEB1P37275 1124 aaPredicted RBP25.79■■□□□ 1.72
C9orf3-206ENST00000428313 TRIM26Q12899 539 aaPredicted RBP25.7■■□□□ 1.7
C9orf3-206ENST00000428313 ZCCHC6Q5VYS8 1495 aaKnown RBP25.51■■□□□ 1.67
C9orf3-206ENST00000428313 ACIN1Q9UKV3 1341 aaKnown RBP25.39■■□□□ 1.66
C9orf3-206ENST00000428313 LOC105371045A0A1W2PR82 267 aa25.17■■□□□ 1.62
C9orf3-206ENST00000428313 NEUROD1Q13562 356 aa25.16■■□□□ 1.62
C9orf3-206ENST00000428313 GTF3C3Q9Y5Q9 886 aa25.07■■□□□ 1.6
C9orf3-206ENST00000428313 CENPBP07199 599 aaPredicted RBP25.06■■□□□ 1.6
C9orf3-206ENST00000428313 TTBK1Q5TCY1 1321 aaPredicted RBP25.05■■□□□ 1.6
C9orf3-206ENST00000428313 DIEXFQ68CQ4 756 aaKnown RBP24.66■■□□□ 1.54
C9orf3-206ENST00000428313 CCER1Q8TC90 406 aaPredicted RBP24.38■■□□□ 1.49
C9orf3-206ENST00000428313 TRIM41Q8WV44 630 aa24.37■■□□□ 1.49
C9orf3-206ENST00000428313 BCL11AQ9H165 835 aa24.36■■□□□ 1.49
C9orf3-206ENST00000428313 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.31■■□□□ 1.48
C9orf3-206ENST00000428313 DCAF8L2P0C7V8 631 aa24.26■■□□□ 1.47
C9orf3-206ENST00000428313 ANP32EQ9BTT0 268 aa24.2■■□□□ 1.46
C9orf3-206ENST00000428313 CLSPNQ9HAW4 1339 aa24.17■■□□□ 1.46
C9orf3-206ENST00000428313 ZNF316A6NFI3 1004 aaPredicted RBP24.16■■□□□ 1.46
C9orf3-206ENST00000428313 ABCC9O60706 1549 aa24.16■■□□□ 1.46
C9orf3-206ENST00000428313 FAM9AQ8IZU1 332 aaPredicted RBP24.11■■□□□ 1.45
C9orf3-206ENST00000428313 YTHDC1Q96MU7 727 aaKnown RBP24.07■■□□□ 1.44
C9orf3-206ENST00000428313 MIER1Q8N108 512 aa23.93■■□□□ 1.42
C9orf3-206ENST00000428313 TSHZ2Q9NRE2 1034 aa23.86■■□□□ 1.41
C9orf3-206ENST00000428313 SUPT16HQ9Y5B9 1047 aaKnown RBP23.85■■□□□ 1.41
C9orf3-206ENST00000428313 RSF1Q96T23 1441 aaPredicted RBP23.84■■□□□ 1.41
C9orf3-206ENST00000428313 CSRNP3Q8WYN3 585 aa23.8■■□□□ 1.4
C9orf3-206ENST00000428313 WRNQ14191 1432 aaPredicted RBP eCLIP23.78■■□□□ 1.4
C9orf3-206ENST00000428313 RB1CC1Q8TDY2 1594 aa23.78■■□□□ 1.4
C9orf3-206ENST00000428313 PRKCSHP14314 528 aaPredicted RBP23.66■■□□□ 1.38
C9orf3-206ENST00000428313 EHMT2Q96KQ7 1210 aa23.64■■□□□ 1.37
C9orf3-206ENST00000428313 SCRIBQ14160 1630 aa23.63■■□□□ 1.37
C9orf3-206ENST00000428313 NACADO15069 1562 aa23.43■■□□□ 1.34
C9orf3-206ENST00000428313 ERICH6Q7L0X2 663 aa23.4■■□□□ 1.34
C9orf3-206ENST00000428313 CEP162Q5TB80 1403 aa23.37■■□□□ 1.33
C9orf3-206ENST00000428313 TNIKQ9UKE5 1360 aa23.27■■□□□ 1.32
C9orf3-206ENST00000428313 RBM19Q9Y4C8 960 aaKnown RBP23.25■■□□□ 1.31
C9orf3-206ENST00000428313 MROH2BQ7Z745 1585 aa23.24■■□□□ 1.31
C9orf3-206ENST00000428313 EIF4G1Q04637 1599 aaKnown RBP23.22■■□□□ 1.31
C9orf3-206ENST00000428313 BAZ1AQ9NRL2 1556 aaPredicted RBP23.2■■□□□ 1.3
C9orf3-206ENST00000428313 CECR2Q9BXF3 1484 aa23.2■■□□□ 1.3
C9orf3-206ENST00000428313 MYT1LQ9UL68 1186 aa23.16■■□□□ 1.3
C9orf3-206ENST00000428313 WIZO95785 1651 aa23.13■■□□□ 1.29
C9orf3-206ENST00000428313 APLP2Q06481 763 aa23.06■■□□□ 1.28
C9orf3-206ENST00000428313 MSH5O43196 834 aa23.05■■□□□ 1.28
C9orf3-206ENST00000428313 HNRNPUL2Q1KMD3 747 aaKnown RBP23.05■■□□□ 1.28
C9orf3-206ENST00000428313 FKBP8Q14318 412 aa23.04■■□□□ 1.28
C9orf3-206ENST00000428313 FANCIQ9NVI1 1328 aa23.04■■□□□ 1.28
C9orf3-206ENST00000428313 BCANQ96GW7 911 aa23.03■■□□□ 1.28
C9orf3-206ENST00000428313 EEA1Q15075 1411 aa23.03■■□□□ 1.28
C9orf3-206ENST00000428313 NEFLP07196 543 aa22.94■■□□□ 1.26
C9orf3-206ENST00000428313 TOP2AP11388 1531 aaKnown RBP22.94■■□□□ 1.26
C9orf3-206ENST00000428313 CCDC88BA6NC98 1476 aa22.92■■□□□ 1.26
C9orf3-206ENST00000428313 ABCC8Q09428 1581 aa22.91■■□□□ 1.26
C9orf3-206ENST00000428313 GOLGA3Q08378 1498 aa22.91■■□□□ 1.26
C9orf3-206ENST00000428313 DHX57Q6P158 1386 aaKnown RBP22.91■■□□□ 1.26
C9orf3-206ENST00000428313 SOGA1O94964 1423 aa22.83■■□□□ 1.25
C9orf3-206ENST00000428313 DEKP35659 375 aaKnown RBP22.8■■□□□ 1.24
C9orf3-206ENST00000428313 UBTFP17480 764 aaKnown RBP22.79■■□□□ 1.24
C9orf3-206ENST00000428313 KCNH8Q96L42 1107 aa22.78■■□□□ 1.24
C9orf3-206ENST00000428313 SMARCA4P51532 1647 aa22.77■■□□□ 1.24
C9orf3-206ENST00000428313 ERICH6BQ5W0A0 696 aa22.77■■□□□ 1.24
C9orf3-206ENST00000428313 VPS8Q8N3P4 1428 aa22.77■■□□□ 1.23
C9orf3-206ENST00000428313 SMARCA2P51531 1590 aa22.76■■□□□ 1.23
C9orf3-206ENST00000428313 ITGAEP38570 1179 aa22.71■■□□□ 1.23
C9orf3-206ENST00000428313 CLIP1P30622 1438 aa22.7■■□□□ 1.22
C9orf3-206ENST00000428313 ANO8Q9HCE9 1232 aaPredicted RBP22.69■■□□□ 1.22
C9orf3-206ENST00000428313 KIF21BO75037 1637 aa22.68■■□□□ 1.22
C9orf3-206ENST00000428313 CDK11AQ9UQ88 783 aaPredicted RBP22.67■■□□□ 1.22
C9orf3-206ENST00000428313 CEP164Q9UPV0 1460 aa22.64■■□□□ 1.22
C9orf3-206ENST00000428313 RUSC2Q8N2Y8 1516 aa22.64■■□□□ 1.22
C9orf3-206ENST00000428313 CUX2O14529 1486 aa22.62■■□□□ 1.21
C9orf3-206ENST00000428313 CCER2I3L3R5 266 aa22.61■■□□□ 1.21
C9orf3-206ENST00000428313 BAZ1BQ9UIG0 1483 aaKnown RBP22.56■■□□□ 1.2
C9orf3-206ENST00000428313 UNC13AQ9UPW8 1703 aa22.49■■□□□ 1.19
C9orf3-206ENST00000428313 SALL2Q9Y467 1007 aaPredicted RBP22.47■■□□□ 1.19
C9orf3-206ENST00000428313 PEG3Q9GZU2 1588 aa22.46■■□□□ 1.19
C9orf3-206ENST00000428313 PPP1R15AO75807 674 aaPredicted RBP22.46■■□□□ 1.19
C9orf3-206ENST00000428313 RRBP1Q9P2E9 1410 aaKnown RBP22.45■■□□□ 1.19
C9orf3-206ENST00000428313 UBE2Q2Q8WVN8 375 aa22.44■■□□□ 1.18
C9orf3-206ENST00000428313 TRIM52Q96A61 297 aa22.44■■□□□ 1.18
C9orf3-206ENST00000428313 DDX10Q13206 875 aaKnown RBP22.43■■□□□ 1.18
C9orf3-206ENST00000428313 NOP58Q9Y2X3 529 aaKnown RBP22.42■■□□□ 1.18
C9orf3-206ENST00000428313 MAPKBP1O60336 1514 aa22.38■■□□□ 1.17
C9orf3-206ENST00000428313 ANP32CO43423 234 aa22.37■■□□□ 1.17
C9orf3-206ENST00000428313 PPP4R2Q9NY27 417 aa22.34■■□□□ 1.17
C9orf3-206ENST00000428313 WDR97A6NE52 1622 aa22.33■■□□□ 1.16
C9orf3-206ENST00000428313 NBR1Q14596 966 aa22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms