RNA–Protein interactions for RNA: ENST00000542570.5

TOP3A-208, Transcript of DNA topoisomerase III alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TOP3A, Length 4,116 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-208ENST00000542570 NISCHQ9Y2I1 1504 aa19.43■□□□□ 0.7
TOP3A-208ENST00000542570 DCAF8L2P0C7V8 631 aa19.01■□□□□ 0.63
TOP3A-208ENST00000542570 SHROOM4Q9ULL8 1493 aa18.13■□□□□ 0.49
TOP3A-208ENST00000542570 SUPT5HO00267 1087 aaKnown RBP17.96■□□□□ 0.46
TOP3A-208ENST00000542570 EHMT2Q96KQ7 1210 aa17.3■□□□□ 0.36
TOP3A-208ENST00000542570 FAM9AQ8IZU1 332 aaPredicted RBP16.89■□□□□ 0.29
TOP3A-208ENST00000542570 ABCC9O60706 1549 aa16.83■□□□□ 0.28
TOP3A-208ENST00000542570 PABPN1Q86U42 306 aaKnown RBP eCLIP16.62■□□□□ 0.25
TOP3A-208ENST00000542570 TTBK1Q5TCY1 1321 aaPredicted RBP16.53■□□□□ 0.24
TOP3A-208ENST00000542570 RANGAP1P46060 587 aaPredicted RBP16.51■□□□□ 0.23
TOP3A-208ENST00000542570 TRIM41Q8WV44 630 aa16.46■□□□□ 0.23
TOP3A-208ENST00000542570 LOC105371045A0A1W2PR82 267 aa16.29■□□□□ 0.2
TOP3A-208ENST00000542570 PPARGC1BQ86YN6 1023 aaKnown RBP16.26■□□□□ 0.19
TOP3A-208ENST00000542570 CHIC1Q5VXU3 224 aa16.25■□□□□ 0.19
TOP3A-208ENST00000542570 PCGF6Q9BYE7 350 aa16.24■□□□□ 0.19
TOP3A-208ENST00000542570 UBTFP17480 764 aaKnown RBP16.11■□□□□ 0.17
TOP3A-208ENST00000542570 ZCCHC6Q5VYS8 1495 aaKnown RBP16.1■□□□□ 0.17
TOP3A-208ENST00000542570 ATP1B4Q9UN42 357 aaPredicted RBP16.01■□□□□ 0.15
TOP3A-208ENST00000542570 SCRIBQ14160 1630 aa16.01■□□□□ 0.15
TOP3A-208ENST00000542570 APLP2Q06481 763 aa15.97■□□□□ 0.15
TOP3A-208ENST00000542570 CCDC180Q9P1Z9 1646 aa15.9■□□□□ 0.14
TOP3A-208ENST00000542570 ITGAEP38570 1179 aa15.62■□□□□ 0.09
TOP3A-208ENST00000542570 CCER1Q8TC90 406 aaPredicted RBP15.61■□□□□ 0.09
TOP3A-208ENST00000542570 CECR2Q9BXF3 1484 aa15.55■□□□□ 0.08
TOP3A-208ENST00000542570 RSF1Q96T23 1441 aaPredicted RBP15.53■□□□□ 0.08
TOP3A-208ENST00000542570 HNRNPUL2Q1KMD3 747 aaKnown RBP15.52■□□□□ 0.08
TOP3A-208ENST00000542570 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.49■□□□□ 0.07
TOP3A-208ENST00000542570 TRIM26Q12899 539 aaPredicted RBP15.48■□□□□ 0.07
TOP3A-208ENST00000542570 RB1CC1Q8TDY2 1594 aa15.46■□□□□ 0.07
TOP3A-208ENST00000542570 P3H3Q8IVL6 736 aa15.45■□□□□ 0.06
TOP3A-208ENST00000542570 FBLN2P98095 1184 aa15.43■□□□□ 0.06
TOP3A-208ENST00000542570 ARID3CA6NKF2 412 aa15.4■□□□□ 0.06
TOP3A-208ENST00000542570 NACADO15069 1562 aa15.38■□□□□ 0.05
TOP3A-208ENST00000542570 CSRNP3Q8WYN3 585 aa15.38■□□□□ 0.05
TOP3A-208ENST00000542570 MYO15BQ96JP2 1530 aa15.35■□□□□ 0.05
TOP3A-208ENST00000542570 DCAF1Q9Y4B6 1507 aa15.24■□□□□ 0.03
TOP3A-208ENST00000542570 MROH2BQ7Z745 1585 aa15.24■□□□□ 0.03
TOP3A-208ENST00000542570 HRCP23327 699 aa15.22■□□□□ 0.03
TOP3A-208ENST00000542570 FAM50AQ14320 339 aaKnown RBP15.18■□□□□ 0.02
TOP3A-208ENST00000542570 MYT1LQ9UL68 1186 aa15.14■□□□□ 0.01
TOP3A-208ENST00000542570 BAZ1BQ9UIG0 1483 aaKnown RBP15.1■□□□□ 0.01
TOP3A-208ENST00000542570 YTHDC1Q96MU7 727 aaKnown RBP15.1■□□□□ 0.01
TOP3A-208ENST00000542570 ZEB1P37275 1124 aaPredicted RBP15.1■□□□□ 0.01
TOP3A-208ENST00000542570 CNGB1Q14028 1251 aaPredicted RBP15.08■□□□□ 0
TOP3A-208ENST00000542570 BAZ1AQ9NRL2 1556 aaPredicted RBP15.04■□□□□ -0
TOP3A-208ENST00000542570 WIZO95785 1651 aa15.01□□□□□ -0.01
TOP3A-208ENST00000542570 CCDC88BA6NC98 1476 aa14.99□□□□□ -0.01
TOP3A-208ENST00000542570 NEUROD1Q13562 356 aa14.98□□□□□ -0.01
TOP3A-208ENST00000542570 WRNQ14191 1432 aaPredicted RBP eCLIP14.98□□□□□ -0.01
TOP3A-208ENST00000542570 SOGA1O94964 1423 aa14.97□□□□□ -0.01
TOP3A-208ENST00000542570 POLR3GLQ9BT43 218 aa14.96□□□□□ -0.01
TOP3A-208ENST00000542570 ABCC8Q09428 1581 aa14.95□□□□□ -0.02
TOP3A-208ENST00000542570 TRIM52Q96A61 297 aa14.91□□□□□ -0.02
TOP3A-208ENST00000542570 ZNF777Q9ULD5 760 aaPredicted RBP14.91□□□□□ -0.02
TOP3A-208ENST00000542570 CHMP7Q8WUX9 453 aaPredicted RBP14.84□□□□□ -0.03
TOP3A-208ENST00000542570 DNAJC5BQ9UF47 199 aa14.83□□□□□ -0.04
TOP3A-208ENST00000542570 CHIC2Q9UKJ5 165 aa14.81□□□□□ -0.04
TOP3A-208ENST00000542570 ATAD2BQ9ULI0 1458 aa14.79□□□□□ -0.04
TOP3A-208ENST00000542570 CLIP1P30622 1438 aa14.79□□□□□ -0.04
TOP3A-208ENST00000542570 ZNF326Q5BKZ1 582 aaKnown RBP14.78□□□□□ -0.04
TOP3A-208ENST00000542570 CEP162Q5TB80 1403 aa14.78□□□□□ -0.04
TOP3A-208ENST00000542570 TDRD9Q8NDG6 1382 aaKnown RBP14.74□□□□□ -0.05
TOP3A-208ENST00000542570 RUSC2Q8N2Y8 1516 aa14.74□□□□□ -0.05
TOP3A-208ENST00000542570 SMARCA4P51532 1647 aa14.71□□□□□ -0.06
TOP3A-208ENST00000542570 DIEXFQ68CQ4 756 aaKnown RBP14.7□□□□□ -0.06
TOP3A-208ENST00000542570 CUX2O14529 1486 aa14.69□□□□□ -0.06
TOP3A-208ENST00000542570 KIF27Q86VH2 1401 aa14.68□□□□□ -0.06
TOP3A-208ENST00000542570 ERCC6Q03468 1493 aa14.67□□□□□ -0.06
TOP3A-208ENST00000542570 KCNH8Q96L42 1107 aa14.66□□□□□ -0.06
TOP3A-208ENST00000542570 TOP2AP11388 1531 aaKnown RBP14.66□□□□□ -0.06
TOP3A-208ENST00000542570 CENPBP07199 599 aaPredicted RBP14.65□□□□□ -0.06
TOP3A-208ENST00000542570 GOLGA3Q08378 1498 aa14.65□□□□□ -0.06
TOP3A-208ENST00000542570 SMARCA2P51531 1590 aa14.65□□□□□ -0.06
TOP3A-208ENST00000542570 CADPSQ9ULU8 1353 aa14.62□□□□□ -0.07
TOP3A-208ENST00000542570 HIRIP3Q9BW71 556 aaPredicted RBP14.61□□□□□ -0.07
TOP3A-208ENST00000542570 CARMIL1Q5VZK9 1371 aa14.61□□□□□ -0.07
TOP3A-208ENST00000542570 TNIKQ9UKE5 1360 aa14.61□□□□□ -0.07
TOP3A-208ENST00000542570 RRP7BPQ9NSQ0 103 aa14.6□□□□□ -0.07
TOP3A-208ENST00000542570 KANK4Q5T7N3 995 aaPredicted RBP14.6□□□□□ -0.07
TOP3A-208ENST00000542570 SENP3Q9H4L4 574 aaPredicted RBP14.59□□□□□ -0.07
TOP3A-208ENST00000542570 MTUS2Q5JR59 1369 aa14.58□□□□□ -0.07
TOP3A-208ENST00000542570 CDK11AQ9UQ88 783 aaPredicted RBP14.58□□□□□ -0.08
TOP3A-208ENST00000542570 PLPPR3Q6T4P5 718 aa14.57□□□□□ -0.08
TOP3A-208ENST00000542570 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.56□□□□□ -0.086e-6■□□□□ 8.3
TOP3A-208ENST00000542570 CEP164Q9UPV0 1460 aa14.55□□□□□ -0.08
TOP3A-208ENST00000542570 EEA1Q15075 1411 aa14.55□□□□□ -0.08
TOP3A-208ENST00000542570 SLC4A1APQ9BWU0 796 aaKnown RBP14.55□□□□□ -0.08
TOP3A-208ENST00000542570 EIF4G1Q04637 1599 aaKnown RBP14.5□□□□□ -0.09
TOP3A-208ENST00000542570 RAPGEF2Q9Y4G8 1499 aa14.49□□□□□ -0.09
TOP3A-208ENST00000542570 NESP48681 1621 aa14.48□□□□□ -0.09
TOP3A-208ENST00000542570 ZNF316A6NFI3 1004 aaPredicted RBP14.48□□□□□ -0.09
TOP3A-208ENST00000542570 PDS5BQ9NTI5 1447 aa14.46□□□□□ -0.09
TOP3A-208ENST00000542570 NPM1P06748 294 aaKnown RBP eCLIP14.45□□□□□ -0.1
TOP3A-208ENST00000542570 BICRAQ9NZM4 1560 aa14.45□□□□□ -0.1
TOP3A-208ENST00000542570 FANCD2Q9BXW9 1451 aa14.43□□□□□ -0.1
TOP3A-208ENST00000542570 RAD54L2Q9Y4B4 1467 aa14.43□□□□□ -0.1
TOP3A-208ENST00000542570 PLEKHD1A6NEE1 506 aa14.42□□□□□ -0.1
TOP3A-208ENST00000542570 SIN3AQ96ST3 1273 aa14.42□□□□□ -0.1
TOP3A-208ENST00000542570 CHGAP10645 457 aaKnown RBP14.42□□□□□ -0.1
TOP3A-208ENST00000542570 KDM2AQ9Y2K7 1162 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms