RNA–Protein interactions for RNA: ENST00000582981.5

TOP3A-214, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 2

Gene TOP3A, Length 3,239 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-214ENST00000582981 NISCHQ9Y2I1 1504 aa20.54■□□□□ 0.88
TOP3A-214ENST00000582981 SHROOM4Q9ULL8 1493 aa18.46■□□□□ 0.55
TOP3A-214ENST00000582981 SUPT5HO00267 1087 aaKnown RBP18.19■□□□□ 0.5
TOP3A-214ENST00000582981 DCAF8L2P0C7V8 631 aa17.84■□□□□ 0.45
TOP3A-214ENST00000582981 HRCP23327 699 aa17.54■□□□□ 0.4
TOP3A-214ENST00000582981 MYO15BQ96JP2 1530 aa17.5■□□□□ 0.39
TOP3A-214ENST00000582981 CHIC1Q5VXU3 224 aa17.46■□□□□ 0.39
TOP3A-214ENST00000582981 PCGF6Q9BYE7 350 aa17.43■□□□□ 0.38
TOP3A-214ENST00000582981 PPARGC1BQ86YN6 1023 aaKnown RBP17.37■□□□□ 0.37
TOP3A-214ENST00000582981 ZCCHC6Q5VYS8 1495 aaKnown RBP17.37■□□□□ 0.37
TOP3A-214ENST00000582981 PELP1Q8IZL8 1130 aaKnown RBP17.31■□□□□ 0.36
TOP3A-214ENST00000582981 LOC105371045A0A1W2PR82 267 aa17.26■□□□□ 0.35
TOP3A-214ENST00000582981 EHMT2Q96KQ7 1210 aa17.08■□□□□ 0.33
TOP3A-214ENST00000582981 CCDC180Q9P1Z9 1646 aa17.01■□□□□ 0.31
TOP3A-214ENST00000582981 FAM9AQ8IZU1 332 aaPredicted RBP16.93■□□□□ 0.3
TOP3A-214ENST00000582981 SCAF1Q9H7N4 1312 aaKnown RBP16.83■□□□□ 0.29
TOP3A-214ENST00000582981 TRIM26Q12899 539 aaPredicted RBP16.69■□□□□ 0.26
TOP3A-214ENST00000582981 MYT1Q01538 1121 aa16.68■□□□□ 0.26
TOP3A-214ENST00000582981 DCAF1Q9Y4B6 1507 aa16.67■□□□□ 0.26
TOP3A-214ENST00000582981 TRIM41Q8WV44 630 aa16.67■□□□□ 0.26
TOP3A-214ENST00000582981 SCRIBQ14160 1630 aa16.56■□□□□ 0.24
TOP3A-214ENST00000582981 TTBK1Q5TCY1 1321 aaPredicted RBP16.53■□□□□ 0.24
TOP3A-214ENST00000582981 ABCC9O60706 1549 aa16.5■□□□□ 0.23
TOP3A-214ENST00000582981 RSF1Q96T23 1441 aaPredicted RBP16.49■□□□□ 0.23
TOP3A-214ENST00000582981 RB1CC1Q8TDY2 1594 aa16.42■□□□□ 0.22
TOP3A-214ENST00000582981 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.34■□□□□ 0.21
TOP3A-214ENST00000582981 ZEB1P37275 1124 aaPredicted RBP16.33■□□□□ 0.2
TOP3A-214ENST00000582981 CECR2Q9BXF3 1484 aa16.31■□□□□ 0.2
TOP3A-214ENST00000582981 NEUROD1Q13562 356 aa16.3■□□□□ 0.2
TOP3A-214ENST00000582981 ACIN1Q9UKV3 1341 aaKnown RBP16.3■□□□□ 0.2
TOP3A-214ENST00000582981 GTF3C3Q9Y5Q9 886 aa16.29■□□□□ 0.2
TOP3A-214ENST00000582981 CCER1Q8TC90 406 aaPredicted RBP16.19■□□□□ 0.18
TOP3A-214ENST00000582981 MROH2BQ7Z745 1585 aa16.16■□□□□ 0.18
TOP3A-214ENST00000582981 CENPBP07199 599 aaPredicted RBP16.11■□□□□ 0.17
TOP3A-214ENST00000582981 WIZO95785 1651 aa16.09■□□□□ 0.17
TOP3A-214ENST00000582981 RANGAP1P46060 587 aaPredicted RBP15.98■□□□□ 0.15
TOP3A-214ENST00000582981 ABCC8Q09428 1581 aa15.97■□□□□ 0.15
TOP3A-214ENST00000582981 NACADO15069 1562 aa15.96■□□□□ 0.15
TOP3A-214ENST00000582981 UBTFP17480 764 aaKnown RBP15.95■□□□□ 0.14
TOP3A-214ENST00000582981 DIEXFQ68CQ4 756 aaKnown RBP15.93■□□□□ 0.14
TOP3A-214ENST00000582981 YTHDC1Q96MU7 727 aaKnown RBP15.92■□□□□ 0.14
TOP3A-214ENST00000582981 CCDC88BA6NC98 1476 aa15.91■□□□□ 0.14
TOP3A-214ENST00000582981 SOGA1O94964 1423 aa15.88■□□□□ 0.13
TOP3A-214ENST00000582981 PABPN1Q86U42 306 aaKnown RBP eCLIP15.87■□□□□ 0.13
TOP3A-214ENST00000582981 HNRNPUL2Q1KMD3 747 aaKnown RBP15.86■□□□□ 0.13
TOP3A-214ENST00000582981 RUSC2Q8N2Y8 1516 aa15.83■□□□□ 0.12
TOP3A-214ENST00000582981 CEP162Q5TB80 1403 aa15.81■□□□□ 0.12
TOP3A-214ENST00000582981 BCL11AQ9H165 835 aa15.76■□□□□ 0.11
TOP3A-214ENST00000582981 BAZ1AQ9NRL2 1556 aaPredicted RBP15.75■□□□□ 0.11
TOP3A-214ENST00000582981 CSRNP3Q8WYN3 585 aa15.74■□□□□ 0.11
TOP3A-214ENST00000582981 EIF4G1Q04637 1599 aaKnown RBP15.68■□□□□ 0.1
TOP3A-214ENST00000582981 ZNF316A6NFI3 1004 aaPredicted RBP15.63■□□□□ 0.09
TOP3A-214ENST00000582981 MIER1Q8N108 512 aa15.62■□□□□ 0.09
TOP3A-214ENST00000582981 SMARCA2P51531 1590 aa15.62■□□□□ 0.09
TOP3A-214ENST00000582981 TNIKQ9UKE5 1360 aa15.61■□□□□ 0.09
TOP3A-214ENST00000582981 TOP2AP11388 1531 aaKnown RBP15.61■□□□□ 0.09
TOP3A-214ENST00000582981 SMARCA4P51532 1647 aa15.58■□□□□ 0.08
TOP3A-214ENST00000582981 WRNQ14191 1432 aaPredicted RBP eCLIP15.56■□□□□ 0.08
TOP3A-214ENST00000582981 APLP2Q06481 763 aa15.53■□□□□ 0.08
TOP3A-214ENST00000582981 ANP32EQ9BTT0 268 aa15.53■□□□□ 0.08
TOP3A-214ENST00000582981 GOLGA3Q08378 1498 aa15.5■□□□□ 0.07
TOP3A-214ENST00000582981 ITGAEP38570 1179 aa15.47■□□□□ 0.07
TOP3A-214ENST00000582981 CLIP1P30622 1438 aa15.47■□□□□ 0.07
TOP3A-214ENST00000582981 RAPGEF2Q9Y4G8 1499 aa15.41■□□□□ 0.06
TOP3A-214ENST00000582981 UNC13AQ9UPW8 1703 aa15.41■□□□□ 0.06
TOP3A-214ENST00000582981 SYNJ1O43426 1573 aa15.4■□□□□ 0.06
TOP3A-214ENST00000582981 EEA1Q15075 1411 aa15.37■□□□□ 0.05
TOP3A-214ENST00000582981 KANK4Q5T7N3 995 aaPredicted RBP15.36■□□□□ 0.05
TOP3A-214ENST00000582981 TSHZ2Q9NRE2 1034 aa15.35■□□□□ 0.05
TOP3A-214ENST00000582981 CEP164Q9UPV0 1460 aa15.35■□□□□ 0.05
TOP3A-214ENST00000582981 SUPT16HQ9Y5B9 1047 aaKnown RBP15.34■□□□□ 0.05
TOP3A-214ENST00000582981 BICRAQ9NZM4 1560 aa15.33■□□□□ 0.04
TOP3A-214ENST00000582981 VPS8Q8N3P4 1428 aa15.32■□□□□ 0.04
TOP3A-214ENST00000582981 PRKCSHP14314 528 aaPredicted RBP15.3■□□□□ 0.04
TOP3A-214ENST00000582981 KCNH8Q96L42 1107 aa15.24■□□□□ 0.03
TOP3A-214ENST00000582981 BAZ1BQ9UIG0 1483 aaKnown RBP15.24■□□□□ 0.03
TOP3A-214ENST00000582981 KIF21BO75037 1637 aa15.23■□□□□ 0.03
TOP3A-214ENST00000582981 BCANQ96GW7 911 aa15.22■□□□□ 0.03
TOP3A-214ENST00000582981 ATAD2BQ9ULI0 1458 aa15.21■□□□□ 0.03
TOP3A-214ENST00000582981 ATP1B4Q9UN42 357 aaPredicted RBP15.21■□□□□ 0.03
TOP3A-214ENST00000582981 DHX57Q6P158 1386 aaKnown RBP15.2■□□□□ 0.02
TOP3A-214ENST00000582981 HIRIP3Q9BW71 556 aaPredicted RBP15.18■□□□□ 0.02
TOP3A-214ENST00000582981 P3H3Q8IVL6 736 aa15.17■□□□□ 0.02
TOP3A-214ENST00000582981 ARAP1Q96P48 1450 aa15.12■□□□□ 0.01
TOP3A-214ENST00000582981 CLSPNQ9HAW4 1339 aa15.09■□□□□ 0.01
TOP3A-214ENST00000582981 SIN3AQ96ST3 1273 aa15.09■□□□□ 0.01
TOP3A-214ENST00000582981 FAM50AQ14320 339 aaKnown RBP15.08■□□□□ 0.01
TOP3A-214ENST00000582981 DDX10Q13206 875 aaKnown RBP15.05■□□□□ 0
TOP3A-214ENST00000582981 PEG3Q9GZU2 1588 aa15.02□□□□□ -0.01
TOP3A-214ENST00000582981 CCNB3Q8WWL7 1395 aa15.01□□□□□ -0.01
TOP3A-214ENST00000582981 TOP2BQ02880 1626 aa15□□□□□ -0.01
TOP3A-214ENST00000582981 PRXQ9BXM0 1461 aa15□□□□□ -0.01
TOP3A-214ENST00000582981 RBM19Q9Y4C8 960 aaKnown RBP15□□□□□ -0.01
TOP3A-214ENST00000582981 RAB3GAP2Q9H2M9 1393 aa14.99□□□□□ -0.01
TOP3A-214ENST00000582981 FKBP8Q14318 412 aa14.98□□□□□ -0.01
TOP3A-214ENST00000582981 CUX1P39880 1505 aa14.98□□□□□ -0.01
TOP3A-214ENST00000582981 TRIM52Q96A61 297 aa14.96□□□□□ -0.01
TOP3A-214ENST00000582981 KIF27Q86VH2 1401 aa14.96□□□□□ -0.01
TOP3A-214ENST00000582981 ARHGAP35Q9NRY4 1499 aa14.96□□□□□ -0.01
TOP3A-214ENST00000582981 ERICH6Q7L0X2 663 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms