Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 CLK1-210ENST00000473565 3208 ntTSL 1 (best)8.25□□□□□ -1.091e-7■■■□□ 17.6
U2AF1Q01081 CLK1-207ENST00000461981 3173 ntTSL 26.96□□□□□ -1.31e-7■■■□□ 17.6
U2AF1Q01081 CLK1-202ENST00000409403 1664 ntTSL 56.13□□□□□ -1.431e-7■■■□□ 17.6
U2AF1Q01081 CLK1-204ENST00000432425 1682 ntTSL 1 (best)4.24□□□□□ -1.731e-7■■■□□ 17.6
U2AF1Q01081 SETD5-201ENST00000302463 4786 ntTSL 1 (best) BASIC12.59□□□□□ -0.394e-8■■■□□ 17.6
U2AF1Q01081 SETD5-228ENST00000493918 4861 ntTSL 1 (best)9.08□□□□□ -0.965e-9■■■□□ 17.6
U2AF1Q01081 TNPO2-216ENST00000589956 594 ntTSL 523.79■■□□□ 1.44e-12■■■□□ 17.6
U2AF1Q01081 TNPO2-208ENST00000587654 575 ntTSL 421.01■□□□□ 0.954e-12■■■□□ 17.6
U2AF1Q01081 TNPO2-204ENST00000585886 2362 ntTSL 1 (best)21■□□□□ 0.954e-12■■■□□ 17.6
U2AF1Q01081 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC18.24■□□□□ 0.514e-12■■■□□ 17.6
U2AF1Q01081 TNPO2-214ENST00000589337 541 ntTSL 416.11■□□□□ 0.174e-12■■■□□ 17.6
U2AF1Q01081 TNPO2-210ENST00000588216 3056 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.124e-12■■■□□ 17.6
U2AF1Q01081 TNPO2-218ENST00000592287 2914 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.124e-12■■■□□ 17.6
U2AF1Q01081 TNPO2-217ENST00000590781 547 ntTSL 410.63□□□□□ -0.714e-12■■■□□ 17.6
U2AF1Q01081 FTX-218ENST00000641360 3897 nt6.82□□□□□ -1.322e-6■■■□□ 17.6
U2AF1Q01081 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC23.18■■□□□ 1.33e-24■■■□□ 17.5
U2AF1Q01081 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.843e-24■■■□□ 17.5
U2AF1Q01081 C6orf106-201ENST00000374021 916 ntAPPRIS ALT2 TSL 3 BASIC9.79□□□□□ -0.843e-24■■■□□ 17.5
U2AF1Q01081 ABCC3-201ENST00000285238 5716 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.163e-7■■■□□ 17.5
U2AF1Q01081 ABCC3-203ENST00000502426 5326 ntTSL 215.71■□□□□ 0.113e-7■■■□□ 17.5
U2AF1Q01081 ABCC3-207ENST00000505699 5271 ntTSL 215.4■□□□□ 0.063e-7■■■□□ 17.5
U2AF1Q01081 VPS13D-202ENST00000460333 4910 ntTSL 27.79□□□□□ -1.164e-7■■■□□ 17.5
U2AF1Q01081 VPS13D-201ENST00000011700 10969 ntTSL 1 (best)7.31□□□□□ -1.244e-7■■■□□ 17.5
U2AF1Q01081 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC6.15□□□□□ -1.434e-7■■■□□ 17.5
U2AF1Q01081 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC5.69□□□□□ -1.54e-7■■■□□ 17.5
U2AF1Q01081 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC23.29■■□□□ 1.322e-9■■■□□ 17.5
U2AF1Q01081 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC22.92■■□□□ 1.262e-9■■■□□ 17.5
U2AF1Q01081 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.022e-9■■■□□ 17.5
U2AF1Q01081 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.82e-9■■■□□ 17.5
U2AF1Q01081 COL18A1-201ENST00000342220 3386 ntTSL 217.23■□□□□ 0.352e-9■■■□□ 17.5
U2AF1Q01081 TUBA1C-208ENST00000552125 575 ntTSL 414.37□□□□□ -0.112e-9■■■□□ 17.5
U2AF1Q01081 TUBA1C-209ENST00000552448 1800 ntTSL 314.03□□□□□ -0.162e-9■■■□□ 17.5
U2AF1Q01081 TUBA1C-202ENST00000541364 1695 ntTSL 2 BASIC12.92□□□□□ -0.342e-9■■■□□ 17.5
U2AF1Q01081 TUBA1C-206ENST00000549818 536 ntTSL 412.73□□□□□ -0.372e-9■■■□□ 17.5
U2AF1Q01081 TUBA1C-210ENST00000639419 1075 ntTSL 5 BASIC12.51□□□□□ -0.412e-9■■■□□ 17.5
U2AF1Q01081 TUBA1C-204ENST00000549183 696 ntTSL 2 BASIC12.25□□□□□ -0.452e-9■■■□□ 17.5
U2AF1Q01081 ERGIC2-206ENST00000548909 645 ntTSL 57.44□□□□□ -1.222e-9■■■□□ 17.5
U2AF1Q01081 LARS-207ENST00000506231 3707 ntTSL 26.97□□□□□ -1.292e-9■■■□□ 17.5
U2AF1Q01081 ERGIC2-204ENST00000548098 318 ntTSL 26.38□□□□□ -1.392e-9■■■□□ 17.5
U2AF1Q01081 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.412e-9■■■□□ 17.5
U2AF1Q01081 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC6.17□□□□□ -1.422e-9■■■□□ 17.5
U2AF1Q01081 ERGIC2-209ENST00000551467 765 ntTSL 55.93□□□□□ -1.462e-9■■■□□ 17.5
U2AF1Q01081 ERGIC2-207ENST00000549182 565 ntTSL 54.42□□□□□ -1.72e-9■■■□□ 17.5
U2AF1Q01081 SNHG1-223ENST00000545440 754 ntTSL 2 BASIC10.23□□□□□ -0.776e-8■■■□□ 17.5
U2AF1Q01081 SNHG1-212ENST00000539975 955 ntTSL 5 BASIC8.6□□□□□ -1.036e-8■■■□□ 17.5
U2AF1Q01081 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC7.6□□□□□ -1.196e-8■■■□□ 17.5
U2AF1Q01081 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC6.75□□□□□ -1.336e-8■■■□□ 17.5
U2AF1Q01081 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.88□□□□□ -1.476e-8■■■□□ 17.5
U2AF1Q01081 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC5.68□□□□□ -1.56e-8■■■□□ 17.5
U2AF1Q01081 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC5.42□□□□□ -1.546e-8■■■□□ 17.5
U2AF1Q01081 GOLGA4-207ENST00000437131 6947 ntTSL 1 (best)2.5□□□□□ -2.015e-7■■■□□ 17.5
U2AF1Q01081 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.721e-12■■■□□ 17.5
U2AF1Q01081 DDB1-213ENST00000539332 1767 ntTSL 211.6□□□□□ -0.551e-12■■■□□ 17.5
U2AF1Q01081 GTSF1-208ENST00000552395 671 ntTSL 510.39□□□□□ -0.751e-12■■■□□ 17.5
U2AF1Q01081 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC8.34□□□□□ -1.071e-12■■■□□ 17.5
U2AF1Q01081 GTSF1-204ENST00000546931 902 ntTSL 57.56□□□□□ -1.21e-12■■■□□ 17.5
U2AF1Q01081 GTSF1-202ENST00000546575 458 ntTSL 25.86□□□□□ -1.471e-12■■■□□ 17.5
U2AF1Q01081 GTSF1-207ENST00000552336 520 ntTSL 34.93□□□□□ -1.621e-12■■■□□ 17.5
U2AF1Q01081 ERI1-205ENST00000520684 828 ntTSL 531.22■■■□□ 2.591e-8■■■□□ 17.4
U2AF1Q01081 ERI1-206ENST00000521844 557 ntTSL 431.03■■■□□ 2.561e-8■■■□□ 17.4
U2AF1Q01081 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC24.07■■□□□ 1.441e-8■■■□□ 17.4
U2AF1Q01081 ERI1-201ENST00000250263 4615 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.151e-8■■■□□ 17.4
U2AF1Q01081 ERI1-209ENST00000523898 5036 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.11e-8■■■□□ 17.4
U2AF1Q01081 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC24.59■■□□□ 1.534e-7■■■□□ 17.4
U2AF1Q01081 CADM1-221ENST00000612235 1042 ntTSL 5 BASIC16.02■□□□□ 0.164e-7■■■□□ 17.4
U2AF1Q01081 LMO7-227ENST00000605961 2039 nt10.48□□□□□ -0.733e-10■■■□□ 17.4
U2AF1Q01081 CADM1-202ENST00000441886 543 ntTSL 56.73□□□□□ -1.334e-7■■■□□ 17.4
U2AF1Q01081 CCAR1-218ENST00000630771 4540 ntTSL 5 BASIC10.08□□□□□ -0.82e-6■■■□□ 17.4
U2AF1Q01081 CCAR1-207ENST00000536012 2447 ntTSL 1 (best)8.34□□□□□ -1.072e-6■■■□□ 17.4
U2AF1Q01081 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.082e-6■■■□□ 17.4
U2AF1Q01081 CCAR1-213ENST00000541012 2432 ntTSL 1 (best)8.25□□□□□ -1.092e-6■■■□□ 17.4
U2AF1Q01081 CCAR1-214ENST00000543225 2407 ntTSL 1 (best)8.11□□□□□ -1.112e-6■■■□□ 17.4
U2AF1Q01081 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC7.08□□□□□ -1.282e-6■■■□□ 17.4
U2AF1Q01081 CCAR1-215ENST00000543229 2475 ntTSL 27.07□□□□□ -1.282e-6■■■□□ 17.4
U2AF1Q01081 CCAR1-211ENST00000539539 3224 ntTSL 25.53□□□□□ -1.522e-6■■■□□ 17.4
U2AF1Q01081 CCAR1-212ENST00000540210 3415 ntTSL 1 (best)5.13□□□□□ -1.592e-6■■■□□ 17.4
U2AF1Q01081 SETD5-226ENST00000490791 667 ntTSL 38.51□□□□□ -1.054e-8■■■□□ 17.4
U2AF1Q01081 RAP1A-203ENST00000433097 666 ntTSL 522.63■■□□□ 1.216e-8■■■□□ 17.4
U2AF1Q01081 RAP1A-201ENST00000356415 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.416e-8■■■□□ 17.4
U2AF1Q01081 RAP1A-202ENST00000369709 5024 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.056e-8■■■□□ 17.4
U2AF1Q01081 RAP1A-204ENST00000494982 1083 ntTSL 510.96□□□□□ -0.656e-8■■■□□ 17.4
U2AF1Q01081 RXRB-205ENST00000483821 582 ntTSL 217.74■□□□□ 0.431e-7■■■□□ 17.4
U2AF1Q01081 RICTOR-210ENST00000515846 677 ntTSL 59.75□□□□□ -0.851e-6■■■□□ 17.4
U2AF1Q01081 RICTOR-205ENST00000509567 638 ntTSL 35.96□□□□□ -1.461e-6■■■□□ 17.4
U2AF1Q01081 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.94□□□□□ -1.781e-6■■■□□ 17.4
U2AF1Q01081 RICTOR-207ENST00000511516 7312 ntTSL 1 (best)3.66□□□□□ -1.821e-6■■■□□ 17.4
U2AF1Q01081 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.991e-6■■■□□ 17.4
U2AF1Q01081 VMP1-201ENST00000262291 2712 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.451e-15■■■□□ 17.4
U2AF1Q01081 VMP1-213ENST00000591877 791 ntTSL 39.95□□□□□ -0.821e-15■■■□□ 17.4
U2AF1Q01081 VMP1-208ENST00000588617 884 ntTSL 49.89□□□□□ -0.831e-15■■■□□ 17.4
U2AF1Q01081 VMP1-215ENST00000592619 838 ntTSL 58.28□□□□□ -1.081e-15■■■□□ 17.4
U2AF1Q01081 VMP1-205ENST00000587470 995 ntTSL 25.12□□□□□ -1.591e-15■■■□□ 17.4
U2AF1Q01081 VMP1-212ENST00000591782 729 ntTSL 54.42□□□□□ -1.71e-15■■■□□ 17.4
U2AF1Q01081 FUS-209ENST00000566605 1787 ntTSL 1 (best)34.01■■■■□ 3.041e-8■■■□□ 17.4
U2AF1Q01081 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC32.56■■■□□ 2.81e-8■■■□□ 17.4
U2AF1Q01081 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC29.96■■■□□ 2.391e-8■■■□□ 17.4
U2AF1Q01081 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.751e-8■■■□□ 17.4
U2AF1Q01081 FUS-206ENST00000487509 4920 ntTSL 217.07■□□□□ 0.321e-8■■■□□ 17.4
U2AF1Q01081 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC22.98■■□□□ 1.271e-8■■■□□ 17.4
U2AF1Q01081 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC22.28■■□□□ 1.161e-8■■■□□ 17.4
Retrieved 100 of 10,096 protein–RNA pairs in 83.5 ms