RNA–Protein interactions for RNA: ENST00000483821.1

RXRB-205, Transcript of retinoid X receptor beta, humanhuman

TSL 2

Gene RXRB, Length 582 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RXRB-205ENST00000483821 NISCHQ9Y2I1 1504 aa30.4■■■□□ 2.46
RXRB-205ENST00000483821 CCDC180Q9P1Z9 1646 aa26.57■■□□□ 1.84
RXRB-205ENST00000483821 ZCCHC6Q5VYS8 1495 aaKnown RBP25.49■■□□□ 1.67
RXRB-205ENST00000483821 DCAF1Q9Y4B6 1507 aa25.22■■□□□ 1.63
RXRB-205ENST00000483821 DCAF8L2P0C7V8 631 aa25.17■■□□□ 1.62
RXRB-205ENST00000483821 ABCC9O60706 1549 aa25.15■■□□□ 1.62
RXRB-205ENST00000483821 MYO15BQ96JP2 1530 aa24.99■■□□□ 1.59
RXRB-205ENST00000483821 NACADO15069 1562 aa24.83■■□□□ 1.57
RXRB-205ENST00000483821 SHROOM4Q9ULL8 1493 aa24.63■■□□□ 1.53
RXRB-205ENST00000483821 RB1CC1Q8TDY2 1594 aa24.63■■□□□ 1.53
RXRB-205ENST00000483821 SCRIBQ14160 1630 aa24.32■■□□□ 1.48
RXRB-205ENST00000483821 UNC13AQ9UPW8 1703 aa23.9■■□□□ 1.42
RXRB-205ENST00000483821 BICRAQ9NZM4 1560 aa23.74■■□□□ 1.39
RXRB-205ENST00000483821 SUPT5HO00267 1087 aaKnown RBP23.74■■□□□ 1.39
RXRB-205ENST00000483821 PABPN1Q86U42 306 aaKnown RBP eCLIP23.71■■□□□ 1.39
RXRB-205ENST00000483821 CECR2Q9BXF3 1484 aa23.55■■□□□ 1.36
RXRB-205ENST00000483821 RSF1Q96T23 1441 aaPredicted RBP23.53■■□□□ 1.36
RXRB-205ENST00000483821 BAZ1AQ9NRL2 1556 aaPredicted RBP23.52■■□□□ 1.36
RXRB-205ENST00000483821 MROH2BQ7Z745 1585 aa23.42■■□□□ 1.34
RXRB-205ENST00000483821 SMARCA4P51532 1647 aa23.35■■□□□ 1.33
RXRB-205ENST00000483821 WIZO95785 1651 aa23.18■■□□□ 1.3
RXRB-205ENST00000483821 PEG3Q9GZU2 1588 aa23.11■■□□□ 1.29
RXRB-205ENST00000483821 SMARCA2P51531 1590 aa23.09■■□□□ 1.29
RXRB-205ENST00000483821 EIF4G1Q04637 1599 aaKnown RBP23.09■■□□□ 1.29
RXRB-205ENST00000483821 TOP2AP11388 1531 aaKnown RBP23.04■■□□□ 1.28
RXRB-205ENST00000483821 ATAD2BQ9ULI0 1458 aa23.04■■□□□ 1.28
RXRB-205ENST00000483821 BAZ1BQ9UIG0 1483 aaKnown RBP22.92■■□□□ 1.26
RXRB-205ENST00000483821 NCAPD3P42695 1498 aa22.91■■□□□ 1.26
RXRB-205ENST00000483821 HMGXB3Q12766 1538 aa22.84■■□□□ 1.25
RXRB-205ENST00000483821 CCDC88BA6NC98 1476 aa22.79■■□□□ 1.24
RXRB-205ENST00000483821 CC2D2AQ9P2K1 1620 aa22.75■■□□□ 1.23
RXRB-205ENST00000483821 CHIC1Q5VXU3 224 aa22.68■■□□□ 1.22
RXRB-205ENST00000483821 TRIM41Q8WV44 630 aa22.42■■□□□ 1.18
RXRB-205ENST00000483821 CFTRP13569 1480 aa22.34■■□□□ 1.17
RXRB-205ENST00000483821 CADPSQ9ULU8 1353 aa22.32■■□□□ 1.16
RXRB-205ENST00000483821 DNAJC5BQ9UF47 199 aa22.22■■□□□ 1.15
RXRB-205ENST00000483821 WRNQ14191 1432 aaPredicted RBP eCLIP22.2■■□□□ 1.14
RXRB-205ENST00000483821 ABCC8Q09428 1581 aa22.18■■□□□ 1.14
RXRB-205ENST00000483821 PRDM2Q13029 1718 aa22.13■■□□□ 1.13
RXRB-205ENST00000483821 LAMC3Q9Y6N6 1575 aa22.12■■□□□ 1.13
RXRB-205ENST00000483821 PDS5BQ9NTI5 1447 aa22.03■■□□□ 1.12
RXRB-205ENST00000483821 FANCD2Q9BXW9 1451 aa22.03■■□□□ 1.12
RXRB-205ENST00000483821 NESP48681 1621 aa21.99■■□□□ 1.11
RXRB-205ENST00000483821 SYNJ1O43426 1573 aa21.99■■□□□ 1.11
RXRB-205ENST00000483821 TOP2BQ02880 1626 aa21.98■■□□□ 1.11
RXRB-205ENST00000483821 BIVM-ERCC5R4GMW8 1640 aa21.94■■□□□ 1.1
RXRB-205ENST00000483821 EEA1Q15075 1411 aa21.93■■□□□ 1.1
RXRB-205ENST00000483821 CEP164Q9UPV0 1460 aa21.92■■□□□ 1.1
RXRB-205ENST00000483821 CUX1P39880 1505 aa21.91■■□□□ 1.1
RXRB-205ENST00000483821 FAM9AQ8IZU1 332 aaPredicted RBP21.88■■□□□ 1.09
RXRB-205ENST00000483821 DNMBPQ6XZF7 1577 aa21.81■■□□□ 1.08
RXRB-205ENST00000483821 SOGA1O94964 1423 aa21.8■■□□□ 1.08
RXRB-205ENST00000483821 CSRNP3Q8WYN3 585 aa21.77■■□□□ 1.08
RXRB-205ENST00000483821 TOPBP1Q92547 1522 aa21.76■■□□□ 1.07
RXRB-205ENST00000483821 LOC105371045A0A1W2PR82 267 aa21.75■■□□□ 1.07
RXRB-205ENST00000483821 FGD5Q6ZNL6 1462 aa21.72■■□□□ 1.07
RXRB-205ENST00000483821 KIF21AQ7Z4S6 1674 aa21.71■■□□□ 1.07
RXRB-205ENST00000483821 KIF27Q86VH2 1401 aa21.7■■□□□ 1.06
RXRB-205ENST00000483821 URB2Q14146 1524 aaKnown RBP21.7■■□□□ 1.06
RXRB-205ENST00000483821 MRC2Q9UBG0 1479 aa21.69■■□□□ 1.06
RXRB-205ENST00000483821 ERCC6Q03468 1493 aa21.67■■□□□ 1.06
RXRB-205ENST00000483821 RUSC2Q8N2Y8 1516 aa21.66■■□□□ 1.06
RXRB-205ENST00000483821 POLA1P09884 1462 aaPredicted RBP21.63■■□□□ 1.05
RXRB-205ENST00000483821 CUX2O14529 1486 aa21.59■■□□□ 1.05
RXRB-205ENST00000483821 ABCA10Q8WWZ4 1543 aa21.57■■□□□ 1.04
RXRB-205ENST00000483821 WDR62O43379 1518 aa21.54■■□□□ 1.04
RXRB-205ENST00000483821 GOLGA3Q08378 1498 aa21.53■■□□□ 1.04
RXRB-205ENST00000483821 RAD54L2Q9Y4B4 1467 aa21.52■■□□□ 1.04
RXRB-205ENST00000483821 KIF21BO75037 1637 aa21.52■■□□□ 1.04
RXRB-205ENST00000483821 EHMT2Q96KQ7 1210 aa21.5■■□□□ 1.03
RXRB-205ENST00000483821 UBTFP17480 764 aaKnown RBP21.49■■□□□ 1.03
RXRB-205ENST00000483821 TNIKQ9UKE5 1360 aa21.48■■□□□ 1.03
RXRB-205ENST00000483821 IGF1RP08069 1367 aa21.47■■□□□ 1.03
RXRB-205ENST00000483821 PRXQ9BXM0 1461 aa21.45■■□□□ 1.03
RXRB-205ENST00000483821 IFT140Q96RY7 1462 aa21.44■■□□□ 1.02
RXRB-205ENST00000483821 ERICH3Q5RHP9 1530 aa21.44■■□□□ 1.02
RXRB-205ENST00000483821 THOC2Q8NI27 1593 aaKnown RBP21.42■■□□□ 1.02
RXRB-205ENST00000483821 TARBP1Q13395 1621 aaKnown RBP21.4■■□□□ 1.02
RXRB-205ENST00000483821 WDR97A6NE52 1622 aa21.39■■□□□ 1.01
RXRB-205ENST00000483821 CARMIL1Q5VZK9 1371 aa21.38■■□□□ 1.01
RXRB-205ENST00000483821 GAPVD1Q14C86 1478 aa21.38■■□□□ 1.01
RXRB-205ENST00000483821 TDRD9Q8NDG6 1382 aaKnown RBP21.37■■□□□ 1.01
RXRB-205ENST00000483821 RAPGEF2Q9Y4G8 1499 aa21.37■■□□□ 1.01
RXRB-205ENST00000483821 ABCA5Q8WWZ7 1642 aa21.33■■□□□ 1.01
RXRB-205ENST00000483821 CUL7Q14999 1698 aa21.3■■□□□ 1
RXRB-205ENST00000483821 CEP162Q5TB80 1403 aa21.28■■□□□ 1
RXRB-205ENST00000483821 GRIN2BQ13224 1484 aa21.25■□□□□ 0.99
RXRB-205ENST00000483821 AQRO60306 1485 aaKnown RBP eCLIP21.24■□□□□ 0.992e-6■■■■■ 26.9
RXRB-205ENST00000483821 ZNF608Q9ULD9 1512 aaPredicted RBP21.19■□□□□ 0.98
RXRB-205ENST00000483821 FHAD1B1AJZ9 1412 aa21.18■□□□□ 0.98
RXRB-205ENST00000483821 CLIP1P30622 1438 aa21.18■□□□□ 0.98
RXRB-205ENST00000483821 PBRM1Q86U86 1689 aa21.15■□□□□ 0.98
RXRB-205ENST00000483821 EIF4G3O43432 1585 aaKnown RBP21.11■□□□□ 0.97
RXRB-205ENST00000483821 MAGI1Q96QZ7 1491 aaPredicted RBP21.08■□□□□ 0.97
RXRB-205ENST00000483821 ADAMTS12P58397 1594 aa21.07■□□□□ 0.96
RXRB-205ENST00000483821 RANGAP1P46060 587 aaPredicted RBP21.04■□□□□ 0.96
RXRB-205ENST00000483821 SNAPC4Q5SXM2 1469 aa21.04■□□□□ 0.96
RXRB-205ENST00000483821 CHMP7Q8WUX9 453 aaPredicted RBP21■□□□□ 0.95
RXRB-205ENST00000483821 SYNJ2O15056 1496 aa20.99■□□□□ 0.95
RXRB-205ENST00000483821 VPS8Q8N3P4 1428 aa20.97■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms