RNA–Protein interactions for RNA: ENST00000588617.1

VMP1-208, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 884 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-208ENST00000588617 AEBP2Q6ZN18 517 aaPredicted RBP29.57■■■□□ 2.32
VMP1-208ENST00000588617 CHIC1Q5VXU3 224 aa28.31■■■□□ 2.12
VMP1-208ENST00000588617 SENP3Q9H4L4 574 aaPredicted RBP25.13■■□□□ 1.61
VMP1-208ENST00000588617 PHF23Q9BUL5 403 aaPredicted RBP24.88■■□□□ 1.57
VMP1-208ENST00000588617 FOXD1Q16676 465 aa23.41■■□□□ 1.34
VMP1-208ENST00000588617 PLPPR3Q6T4P5 718 aa22.72■■□□□ 1.23
VMP1-208ENST00000588617 PPP6R1Q9UPN7 881 aa22.12■■□□□ 1.13
VMP1-208ENST00000588617 ADRA2BP18089 450 aa22.05■■□□□ 1.12
VMP1-208ENST00000588617 PIAS4Q8N2W9 510 aaPredicted RBP21.93■■□□□ 1.1
VMP1-208ENST00000588617 MSH5O43196 834 aa21.76■■□□□ 1.07
VMP1-208ENST00000588617 KCNA4P22459 653 aa20.97■□□□□ 0.95
VMP1-208ENST00000588617 EHMT2Q96KQ7 1210 aa20.96■□□□□ 0.95
VMP1-208ENST00000588617 POTEDQ86YR6 584 aa20.8■□□□□ 0.92
VMP1-208ENST00000588617 SLC4A1APQ9BWU0 796 aaKnown RBP20.18■□□□□ 0.82
VMP1-208ENST00000588617 MAPK8IP2Q13387 824 aaPredicted RBP20.17■□□□□ 0.82
VMP1-208ENST00000588617 PPP4R3CPQ6ZMV5 832 aa20.14■□□□□ 0.81
VMP1-208ENST00000588617 CSRNP3Q8WYN3 585 aa20.13■□□□□ 0.81
VMP1-208ENST00000588617 SCAF1Q9H7N4 1312 aaKnown RBP20.09■□□□□ 0.81
VMP1-208ENST00000588617 DMRT2Q9Y5R5 561 aa19.99■□□□□ 0.79
VMP1-208ENST00000588617 NCBP3Q53F19 620 aaKnown RBP19.94■□□□□ 0.78
VMP1-208ENST00000588617 NPM3O75607 178 aaKnown RBP19.64■□□□□ 0.73
VMP1-208ENST00000588617 CNKSR2Q8WXI2 1034 aa19.51■□□□□ 0.71
VMP1-208ENST00000588617 HOXD11P31277 338 aaPredicted RBP19.36■□□□□ 0.69
VMP1-208ENST00000588617 ZBTB22O15209 634 aa19.3■□□□□ 0.68
VMP1-208ENST00000588617 RNF216Q9NWF9 866 aaPredicted RBP19.28■□□□□ 0.68
VMP1-208ENST00000588617 DCAF8L1A6NGE4 600 aa19.11■□□□□ 0.65
VMP1-208ENST00000588617 FOXD4L1Q9NU39 408 aa18.95■□□□□ 0.62
VMP1-208ENST00000588617 DNAJC5BQ9UF47 199 aa18.78■□□□□ 0.6
VMP1-208ENST00000588617 RNF39Q9H2S5 420 aa18.63■□□□□ 0.57
VMP1-208ENST00000588617 SLC24A1O60721 1099 aa18.6■□□□□ 0.57
VMP1-208ENST00000588617 RTN4Q9NQC3 1192 aaKnown RBP18.54■□□□□ 0.56
VMP1-208ENST00000588617 AMER1Q5JTC6 1135 aaPredicted RBP18.51■□□□□ 0.55
VMP1-208ENST00000588617 CACNB1Q02641 598 aaPredicted RBP18.5■□□□□ 0.55
VMP1-208ENST00000588617 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.41■□□□□ 0.542e-6■□□□□ 8.1
VMP1-208ENST00000588617 C1QBPQ07021 282 aaKnown RBP18.34■□□□□ 0.53
VMP1-208ENST00000588617 SLC4A2P04920 1241 aa18.26■□□□□ 0.51
VMP1-208ENST00000588617 FKBP8Q14318 412 aa18.16■□□□□ 0.5
VMP1-208ENST00000588617 ATXN8OSP0DMR3 200 aa18.15■□□□□ 0.5
VMP1-208ENST00000588617 MYCNP04198 464 aaPredicted RBP18.11■□□□□ 0.49
VMP1-208ENST00000588617 U3KPZ7 1027 aaPredicted RBP18.11■□□□□ 0.49
VMP1-208ENST00000588617 SPINK5Q9NQ38 1064 aaPredicted RBP17.76■□□□□ 0.43
VMP1-208ENST00000588617 CAPN15O75808 1086 aa17.67■□□□□ 0.42
VMP1-208ENST00000588617 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.62■□□□□ 0.41
VMP1-208ENST00000588617 HNRNPUL2Q1KMD3 747 aaKnown RBP17.62■□□□□ 0.41
VMP1-208ENST00000588617 ATF5Q9Y2D1 282 aaPredicted RBP17.57■□□□□ 0.4
VMP1-208ENST00000588617 SAMD1Q6SPF0 538 aaPredicted RBP17.55■□□□□ 0.4
VMP1-208ENST00000588617 DSG3P32926 999 aa17.54■□□□□ 0.4
VMP1-208ENST00000588617 APLP2Q06481 763 aa17.54■□□□□ 0.4
VMP1-208ENST00000588617 TRHP20396 242 aaPredicted RBP17.46■□□□□ 0.39
VMP1-208ENST00000588617 ZNF219Q9P2Y4 722 aaPredicted RBP17.44■□□□□ 0.38
VMP1-208ENST00000588617 ABCB7O75027 752 aa17.32■□□□□ 0.36
VMP1-208ENST00000588617 FBXO3Q9UK99 471 aa17.17■□□□□ 0.34
VMP1-208ENST00000588617 PLCB2Q00722 1185 aa17.05■□□□□ 0.32
VMP1-208ENST00000588617 POLA2Q14181 598 aa17.05■□□□□ 0.32
VMP1-208ENST00000588617 SPDYE4A6NLX3 237 aa17.04■□□□□ 0.32
VMP1-208ENST00000588617 VASPP50552 380 aaPredicted RBP16.91■□□□□ 0.3
VMP1-208ENST00000588617 HAP1P54257 671 aaPredicted RBP16.88■□□□□ 0.29
VMP1-208ENST00000588617 DCAF8L2P0C7V8 631 aa16.87■□□□□ 0.29
VMP1-208ENST00000588617 MKRN4PQ13434 485 aaPredicted RBP16.85■□□□□ 0.29
VMP1-208ENST00000588617 PROM2Q8N271 834 aa16.84■□□□□ 0.29
VMP1-208ENST00000588617 IFNLR1Q8IU57 520 aaPredicted RBP16.77■□□□□ 0.28
VMP1-208ENST00000588617 FBLN2P98095 1184 aa16.76■□□□□ 0.27
VMP1-208ENST00000588617 ZBTB12Q9Y330 459 aaPredicted RBP16.71■□□□□ 0.27
VMP1-208ENST00000588617 RBM42Q9BTD8 480 aaKnown RBP16.68■□□□□ 0.26
VMP1-208ENST00000588617 BCANQ96GW7 911 aa16.67■□□□□ 0.26
VMP1-208ENST00000588617 PKD2Q13563 968 aa16.64■□□□□ 0.25
VMP1-208ENST00000588617 VSIG10Q8N0Z9 540 aa16.59■□□□□ 0.25
VMP1-208ENST00000588617 OSCARQ8IYS5 282 aa16.54■□□□□ 0.24
VMP1-208ENST00000588617 PRKCSHP14314 528 aaPredicted RBP16.52■□□□□ 0.24
VMP1-208ENST00000588617 TAOK2Q9UL54 1235 aa16.46■□□□□ 0.23
VMP1-208ENST00000588617 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.45■□□□□ 0.22
VMP1-208ENST00000588617 KLHL34Q8N239 644 aa16.43■□□□□ 0.22
VMP1-208ENST00000588617 BBXQ8WY36 941 aaPredicted RBP16.4■□□□□ 0.22
VMP1-208ENST00000588617 SPOCK2Q92563 424 aa16.39■□□□□ 0.21
VMP1-208ENST00000588617 ECM2O94769 699 aaPredicted RBP16.37■□□□□ 0.21
VMP1-208ENST00000588617 AKT1S1Q96B36 256 aa16.37■□□□□ 0.21
VMP1-208ENST00000588617 POTEHQ6S545 545 aa16.35■□□□□ 0.21
VMP1-208ENST00000588617 PAXIP1Q6ZW49 1069 aaPredicted RBP16.34■□□□□ 0.21
VMP1-208ENST00000588617 KDM2AQ9Y2K7 1162 aa16.32■□□□□ 0.2
VMP1-208ENST00000588617 CFAP44Q96MT7 982 aa16.31■□□□□ 0.2
VMP1-208ENST00000588617 NPM1P06748 294 aaKnown RBP eCLIP16.29■□□□□ 0.2
VMP1-208ENST00000588617 SPDYE2BA6NHP3 402 aa16.25■□□□□ 0.19
VMP1-208ENST00000588617 SPDYE6P0CI01 402 aa16.25■□□□□ 0.19
VMP1-208ENST00000588617 SPDYE2Q495Y8 402 aa16.25■□□□□ 0.19
VMP1-208ENST00000588617 TPRNQ4KMQ1 711 aa16.24■□□□□ 0.19
VMP1-208ENST00000588617 CHRDL2Q6WN34 429 aa16.23■□□□□ 0.19
VMP1-208ENST00000588617 REM2Q8IYK8 340 aaPredicted RBP16.23■□□□□ 0.19
VMP1-208ENST00000588617 STAG3Q9UJ98 1225 aa16.2■□□□□ 0.18
VMP1-208ENST00000588617 PLCD3Q8N3E9 789 aa16.18■□□□□ 0.18
VMP1-208ENST00000588617 RGL2O15211 777 aa16.16■□□□□ 0.18
VMP1-208ENST00000588617 SPRYD3Q8NCJ5 442 aa16.15■□□□□ 0.18
VMP1-208ENST00000588617 ZNF692Q9BU19 519 aaPredicted RBP16.13■□□□□ 0.17
VMP1-208ENST00000588617 SSUH2Q9Y2M2 353 aa16.09■□□□□ 0.17
VMP1-208ENST00000588617 PITPNM1O00562 1244 aa16.08■□□□□ 0.16
VMP1-208ENST00000588617 MIER1Q8N108 512 aa16.08■□□□□ 0.16
VMP1-208ENST00000588617 TSHZ2Q9NRE2 1034 aa16.08■□□□□ 0.16
VMP1-208ENST00000588617 CHGAP10645 457 aaKnown RBP16■□□□□ 0.15
VMP1-208ENST00000588617 CIZ1Q9ULV3 898 aaPredicted RBP15.99■□□□□ 0.15
VMP1-208ENST00000588617 PABPN1Q86U42 306 aaKnown RBP eCLIP15.95■□□□□ 0.14
VMP1-208ENST00000588617 PIP4P2Q8N4L2 257 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms