RNA–Protein interactions for RNA: ENST00000587470.1

VMP1-205, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 995 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-205ENST00000587470 AEBP2Q6ZN18 517 aaPredicted RBP28.37■■■□□ 2.13
VMP1-205ENST00000587470 CHIC1Q5VXU3 224 aa26.88■■□□□ 1.89
VMP1-205ENST00000587470 SENP3Q9H4L4 574 aaPredicted RBP24.02■■□□□ 1.44
VMP1-205ENST00000587470 PHF23Q9BUL5 403 aaPredicted RBP23.76■■□□□ 1.39
VMP1-205ENST00000587470 FOXD1Q16676 465 aa22.49■■□□□ 1.19
VMP1-205ENST00000587470 PLPPR3Q6T4P5 718 aa21.4■■□□□ 1.02
VMP1-205ENST00000587470 PPP6R1Q9UPN7 881 aa21.1■□□□□ 0.97
VMP1-205ENST00000587470 ADRA2BP18089 450 aa20.96■□□□□ 0.95
VMP1-205ENST00000587470 MSH5O43196 834 aa20.91■□□□□ 0.94
VMP1-205ENST00000587470 PIAS4Q8N2W9 510 aaPredicted RBP20.91■□□□□ 0.94
VMP1-205ENST00000587470 POTEDQ86YR6 584 aa20.46■□□□□ 0.87
VMP1-205ENST00000587470 MAPK8IP2Q13387 824 aaPredicted RBP19.27■□□□□ 0.68
VMP1-205ENST00000587470 DMRT2Q9Y5R5 561 aa19.12■□□□□ 0.65
VMP1-205ENST00000587470 SCAF1Q9H7N4 1312 aaKnown RBP19■□□□□ 0.63
VMP1-205ENST00000587470 PPP4R3CPQ6ZMV5 832 aa18.8■□□□□ 0.6
VMP1-205ENST00000587470 HOXD11P31277 338 aaPredicted RBP18.46■□□□□ 0.55
VMP1-205ENST00000587470 CNKSR2Q8WXI2 1034 aa18.42■□□□□ 0.54
VMP1-205ENST00000587470 RNF216Q9NWF9 866 aaPredicted RBP18.27■□□□□ 0.52
VMP1-205ENST00000587470 DCAF8L1A6NGE4 600 aa18.13■□□□□ 0.49
VMP1-205ENST00000587470 NCBP3Q53F19 620 aaKnown RBP17.96■□□□□ 0.47
VMP1-205ENST00000587470 RNF39Q9H2S5 420 aa17.94■□□□□ 0.46
VMP1-205ENST00000587470 CACNB1Q02641 598 aaPredicted RBP17.88■□□□□ 0.45
VMP1-205ENST00000587470 NPM3O75607 178 aaKnown RBP17.86■□□□□ 0.45
VMP1-205ENST00000587470 DNAJC5BQ9UF47 199 aa17.81■□□□□ 0.44
VMP1-205ENST00000587470 C1QBPQ07021 282 aaKnown RBP17.61■□□□□ 0.41
VMP1-205ENST00000587470 KCNA4P22459 653 aa17.55■□□□□ 0.4
VMP1-205ENST00000587470 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.41■□□□□ 0.382e-6■□□□□ 8.1
VMP1-205ENST00000587470 U3KPZ7 1027 aaPredicted RBP17.22■□□□□ 0.35
VMP1-205ENST00000587470 SLC4A2P04920 1241 aa17.12■□□□□ 0.33
VMP1-205ENST00000587470 SPINK5Q9NQ38 1064 aaPredicted RBP16.94■□□□□ 0.3
VMP1-205ENST00000587470 DSG3P32926 999 aa16.81■□□□□ 0.28
VMP1-205ENST00000587470 CAPN15O75808 1086 aa16.77■□□□□ 0.28
VMP1-205ENST00000587470 SLC4A1APQ9BWU0 796 aaKnown RBP16.62■□□□□ 0.25
VMP1-205ENST00000587470 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.54■□□□□ 0.24
VMP1-205ENST00000587470 HNRNPUL2Q1KMD3 747 aaKnown RBP16.54■□□□□ 0.24
VMP1-205ENST00000587470 TRHP20396 242 aaPredicted RBP16.52■□□□□ 0.24
VMP1-205ENST00000587470 APLP2Q06481 763 aa16.5■□□□□ 0.23
VMP1-205ENST00000587470 SAMD1Q6SPF0 538 aaPredicted RBP16.5■□□□□ 0.23
VMP1-205ENST00000587470 ZNF219Q9P2Y4 722 aaPredicted RBP16.5■□□□□ 0.23
VMP1-205ENST00000587470 ABCB7O75027 752 aa16.44■□□□□ 0.22
VMP1-205ENST00000587470 MYCNP04198 464 aaPredicted RBP16.44■□□□□ 0.22
VMP1-205ENST00000587470 FOXD4L1Q9NU39 408 aa16.31■□□□□ 0.2
VMP1-205ENST00000587470 ZBTB22O15209 634 aa16.22■□□□□ 0.19
VMP1-205ENST00000587470 ATF5Q9Y2D1 282 aaPredicted RBP16.2■□□□□ 0.18
VMP1-205ENST00000587470 POLA2Q14181 598 aa16.13■□□□□ 0.17
VMP1-205ENST00000587470 POTEHQ6S545 545 aa15.99■□□□□ 0.15
VMP1-205ENST00000587470 RBM42Q9BTD8 480 aaKnown RBP15.9■□□□□ 0.14
VMP1-205ENST00000587470 ATXN8OSP0DMR3 200 aa15.81■□□□□ 0.12
VMP1-205ENST00000587470 CSRNP3Q8WYN3 585 aa15.74■□□□□ 0.11
VMP1-205ENST00000587470 EHMT2Q96KQ7 1210 aa15.74■□□□□ 0.11
VMP1-205ENST00000587470 ZBTB12Q9Y330 459 aaPredicted RBP15.72■□□□□ 0.11
VMP1-205ENST00000587470 OSCARQ8IYS5 282 aa15.64■□□□□ 0.09
VMP1-205ENST00000587470 CHRDL2Q6WN34 429 aa15.61■□□□□ 0.09
VMP1-205ENST00000587470 AKT1S1Q96B36 256 aa15.6■□□□□ 0.09
VMP1-205ENST00000587470 REM2Q8IYK8 340 aaPredicted RBP15.49■□□□□ 0.07
VMP1-205ENST00000587470 MKRN4PQ13434 485 aaPredicted RBP15.46■□□□□ 0.07
VMP1-205ENST00000587470 FBLN2P98095 1184 aa15.34■□□□□ 0.05
VMP1-205ENST00000587470 PITPNM1O00562 1244 aa15.33■□□□□ 0.04
VMP1-205ENST00000587470 SPDYE2BA6NHP3 402 aa15.32■□□□□ 0.04
VMP1-205ENST00000587470 SPDYE6P0CI01 402 aa15.32■□□□□ 0.04
VMP1-205ENST00000587470 SPDYE2Q495Y8 402 aa15.32■□□□□ 0.04
VMP1-205ENST00000587470 PIP4P2Q8N4L2 257 aa15.29■□□□□ 0.04
VMP1-205ENST00000587470 FXR2P51116 673 aaKnown RBP eCLIP15.23■□□□□ 0.03
VMP1-205ENST00000587470 SSUH2Q9Y2M2 353 aa15.2■□□□□ 0.02
VMP1-205ENST00000587470 ZNF692Q9BU19 519 aaPredicted RBP15.09■□□□□ 0.01
VMP1-205ENST00000587470 SPDYE1Q8NFV5 336 aaPredicted RBP15□□□□□ -0.01
VMP1-205ENST00000587470 SP7Q8TDD2 431 aaPredicted RBP15□□□□□ -0.01
VMP1-205ENST00000587470 CLEC11AQ9Y240 323 aa14.93□□□□□ -0.02
VMP1-205ENST00000587470 PABPN1Q86U42 306 aaKnown RBP eCLIP14.91□□□□□ -0.02
VMP1-205ENST00000587470 EVX2Q03828 476 aa14.9□□□□□ -0.02
VMP1-205ENST00000587470 HAX1O00165 279 aa14.88□□□□□ -0.03
VMP1-205ENST00000587470 PRKAR2AP13861 404 aaKnown RBP14.88□□□□□ -0.03
VMP1-205ENST00000587470 CHADLQ6NUI6 762 aa14.75□□□□□ -0.05
VMP1-205ENST00000587470 C19orf67A6NJJ6 358 aa14.73□□□□□ -0.05
VMP1-205ENST00000587470 PRR29P0C7W0 189 aa14.71□□□□□ -0.05
VMP1-205ENST00000587470 SPDYE4A6NLX3 237 aa14.6□□□□□ -0.07
VMP1-205ENST00000587470 FARP1Q9Y4F1 1045 aaPredicted RBP14.53□□□□□ -0.08
VMP1-205ENST00000587470 CREBZFQ9NS37 354 aa14.49□□□□□ -0.09
VMP1-205ENST00000587470 GABBR2O75899 941 aa14.48□□□□□ -0.09
VMP1-205ENST00000587470 STAG3Q9UJ98 1225 aa14.43□□□□□ -0.1
VMP1-205ENST00000587470 PROM2Q8N271 834 aa14.42□□□□□ -0.1
VMP1-205ENST00000587470 CD44P16070 742 aaKnown RBP14.4□□□□□ -0.1
VMP1-205ENST00000587470 MNX1P50219 401 aaPredicted RBP14.31□□□□□ -0.12
VMP1-205ENST00000587470 POTEIP0CG38 1075 aa14.27□□□□□ -0.13
VMP1-205ENST00000587470 FKBP8Q14318 412 aa14.25□□□□□ -0.13
VMP1-205ENST00000587470 ZNF579Q8NAF0 562 aaKnown RBP14.25□□□□□ -0.13
VMP1-205ENST00000587470 ZRANB1Q9UGI0 708 aa14.19□□□□□ -0.14
VMP1-205ENST00000587470 CLCN6P51797 869 aa14.17□□□□□ -0.14
VMP1-205ENST00000587470 GALR2O43603 387 aaPredicted RBP14.08□□□□□ -0.16
VMP1-205ENST00000587470 PHF12Q96QT6 1004 aa14.06□□□□□ -0.16
VMP1-205ENST00000587470 NPM1P06748 294 aaKnown RBP eCLIP14.05□□□□□ -0.16
VMP1-205ENST00000587470 LHX8Q68G74 356 aa14.05□□□□□ -0.16
VMP1-205ENST00000587470 PAK3O75914 559 aaPredicted RBP13.96□□□□□ -0.17
VMP1-205ENST00000587470 DCBLD2Q96PD2 775 aa13.96□□□□□ -0.17
VMP1-205ENST00000587470 CCDC61Q9Y6R9 512 aa13.9□□□□□ -0.18
VMP1-205ENST00000587470 FBXO3Q9UK99 471 aa13.89□□□□□ -0.19
VMP1-205ENST00000587470 MS4A3Q96HJ5 214 aa13.88□□□□□ -0.19
VMP1-205ENST00000587470 MIER1Q8N108 512 aa13.87□□□□□ -0.19
VMP1-205ENST00000587470 PELP1Q8IZL8 1130 aaKnown RBP13.86□□□□□ -0.19
VMP1-205ENST00000587470 PLEKHG5O94827 1062 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms