Protein–RNA interactions for Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC14.64□□□□□ -0.074e-6■■□□□ 12.3
CDC40O60508 DDX17-209ENST00000479734 441 ntTSL 414.61□□□□□ -0.074e-6■■□□□ 12.3
CDC40O60508 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.094e-6■■□□□ 12.3
CDC40O60508 MAZ-213ENST00000568411 599 ntTSL 314.45□□□□□ -0.14e-6■■□□□ 12.3
CDC40O60508 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.124e-6■■□□□ 12.3
CDC40O60508 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.124e-6■■□□□ 12.3
CDC40O60508 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC14.27□□□□□ -0.124e-6■■□□□ 12.3
CDC40O60508 ATG4B-202ENST00000400771 663 ntTSL 514.19□□□□□ -0.144e-6■■□□□ 12.3
CDC40O60508 FDPS-208ENST00000470171 746 ntTSL 214.19□□□□□ -0.144e-6■■□□□ 12.3
CDC40O60508 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.154e-6■■□□□ 12.3
CDC40O60508 FDPS-205ENST00000465559 677 ntTSL 314.11□□□□□ -0.154e-6■■□□□ 12.3
CDC40O60508 SMARCAD1-207ENST00000510105 2409 ntTSL 514.05□□□□□ -0.164e-6■■□□□ 12.3
CDC40O60508 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.174e-6■■□□□ 12.3
CDC40O60508 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.184e-6■■□□□ 12.3
CDC40O60508 MAP4-201ENST00000335271 1564 ntAPPRIS ALT2 TSL 213.87□□□□□ -0.194e-6■■□□□ 12.3
CDC40O60508 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC13.81□□□□□ -0.24e-6■■□□□ 12.3
CDC40O60508 FDPS-210ENST00000474345 713 ntTSL 313.81□□□□□ -0.24e-6■■□□□ 12.3
CDC40O60508 FDPS-213ENST00000489003 976 ntTSL 213.81□□□□□ -0.24e-6■■□□□ 12.3
CDC40O60508 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC13.76□□□□□ -0.214e-6■■□□□ 12.3
CDC40O60508 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.214e-6■■□□□ 12.3
CDC40O60508 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC13.61□□□□□ -0.234e-6■■□□□ 12.3
CDC40O60508 GSE1-201ENST00000253458 7495 ntAPPRIS P3 TSL 5 BASIC13.58□□□□□ -0.244e-6■■□□□ 12.3
CDC40O60508 FDPS-216ENST00000491013 912 ntTSL 513.49□□□□□ -0.254e-6■■□□□ 12.3
CDC40O60508 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.264e-6■■□□□ 12.3
CDC40O60508 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.264e-6■■□□□ 12.3
CDC40O60508 GSE1-202ENST00000393243 7140 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.274e-6■■□□□ 12.3
CDC40O60508 ATG4B-220ENST00000482507 2414 ntTSL 1 (best)13.34□□□□□ -0.274e-6■■□□□ 12.3
CDC40O60508 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.284e-6■■□□□ 12.3
CDC40O60508 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC13.21□□□□□ -0.294e-6■■□□□ 12.3
CDC40O60508 MAZ-204ENST00000561855 672 ntTSL 513.21□□□□□ -0.294e-6■■□□□ 12.3
CDC40O60508 SPATS2L-226ENST00000471601 1730 ntTSL 212.98□□□□□ -0.334e-6■■□□□ 12.3
CDC40O60508 SPATS2L-214ENST00000439084 584 ntTSL 312.92□□□□□ -0.344e-6■■□□□ 12.3
CDC40O60508 HMGCR-208ENST00000509431 421 ntTSL 212.86□□□□□ -0.354e-6■■□□□ 12.3
CDC40O60508 GSE1-203ENST00000405402 4366 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.354e-6■■□□□ 12.3
CDC40O60508 RPS25-201ENST00000524864 1078 ntTSL 212.63□□□□□ -0.394e-6■■□□□ 12.3
CDC40O60508 BCS1L-208ENST00000428880 804 ntTSL 412.61□□□□□ -0.394e-6■■□□□ 12.3
CDC40O60508 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.44e-6■■□□□ 12.3
CDC40O60508 FDPS-219ENST00000495308 808 ntTSL 212.44□□□□□ -0.424e-6■■□□□ 12.3
CDC40O60508 DDX17-201ENST00000216019 6441 ntTSL 1 (best)12.4□□□□□ -0.424e-6■■□□□ 12.3
CDC40O60508 FDPS-207ENST00000468479 938 ntTSL 212.17□□□□□ -0.464e-6■■□□□ 12.3
CDC40O60508 MAZ-206ENST00000562557 475 ntTSL 312□□□□□ -0.494e-6■■□□□ 12.3
CDC40O60508 FDPS-204ENST00000461507 1022 ntTSL 211.7□□□□□ -0.544e-6■■□□□ 12.3
CDC40O60508 FDPS-211ENST00000477057 741 ntTSL 211.7□□□□□ -0.544e-6■■□□□ 12.3
CDC40O60508 RPS25-203ENST00000527791 711 ntTSL 211.66□□□□□ -0.544e-6■■□□□ 12.3
CDC40O60508 FDPS-206ENST00000467076 1178 ntAPPRIS ALT1 TSL 3 BASIC11.63□□□□□ -0.554e-6■■□□□ 12.3
CDC40O60508 SPATS2L-208ENST00000409718 2648 ntAPPRIS P1 TSL 2 BASIC11.28□□□□□ -0.64e-6■■□□□ 12.3
CDC40O60508 GSE1-215ENST00000635906 666 ntTSL 311.24□□□□□ -0.614e-6■■□□□ 12.3
CDC40O60508 BCS1L-213ENST00000443791 580 ntTSL 311.18□□□□□ -0.624e-6■■□□□ 12.3
CDC40O60508 SMARCAD1-204ENST00000457823 4649 ntAPPRIS ALT1 TSL 1 (best) BASIC11.16□□□□□ -0.624e-6■■□□□ 12.3
CDC40O60508 FDPS-220ENST00000611010 1196 ntTSL 5 BASIC11□□□□□ -0.654e-6■■□□□ 12.3
CDC40O60508 VDAC1-202ENST00000395044 1807 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.694e-6■■□□□ 12.3
CDC40O60508 RPL13A-205ENST00000474171 521 ntTSL 210.39□□□□□ -0.754e-6■■□□□ 12.3
CDC40O60508 MAP4-208ENST00000429422 3724 ntTSL 1 (best)10.33□□□□□ -0.764e-6■■□□□ 12.3
CDC40O60508 ATG4B-210ENST00000428861 580 ntTSL 29.86□□□□□ -0.834e-6■■□□□ 12.3
CDC40O60508 DDX17-205ENST00000432525 1354 ntTSL 29.82□□□□□ -0.844e-6■■□□□ 12.3
CDC40O60508 TNS3-204ENST00000428457 5070 ntTSL 1 (best)9.59□□□□□ -0.874e-6■■□□□ 12.3
CDC40O60508 BCS1L-219ENST00000490188 647 ntTSL 39.54□□□□□ -0.884e-6■■□□□ 12.3
CDC40O60508 SPATS2L-206ENST00000409385 2320 ntTSL 2 BASIC9.48□□□□□ -0.894e-6■■□□□ 12.3
CDC40O60508 RPL13A-207ENST00000476300 619 ntTSL 39.39□□□□□ -0.914e-6■■□□□ 12.3
CDC40O60508 SPATS2L-219ENST00000453663 637 ntTSL 49.36□□□□□ -0.914e-6■■□□□ 12.3
CDC40O60508 HMGCR-201ENST00000287936 4585 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.934e-6■■□□□ 12.3
CDC40O60508 MAP4-205ENST00000420772 3478 ntAPPRIS ALT2 TSL 5 BASIC8.8□□□□□ -14e-6■■□□□ 12.3
CDC40O60508 ARHGEF28-210ENST00000510312 8285 ntTSL 28.8□□□□□ -14e-6■■□□□ 12.3
CDC40O60508 ARHGEF28-206ENST00000504003 539 ntTSL 48.4□□□□□ -1.064e-6■■□□□ 12.3
CDC40O60508 SPATS2L-207ENST00000409397 920 ntTSL 37.89□□□□□ -1.154e-6■■□□□ 12.3
CDC40O60508 SPATS2L-201ENST00000358677 6156 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.154e-6■■□□□ 12.3
CDC40O60508 FDPS-209ENST00000471117 630 ntTSL 37.55□□□□□ -1.24e-6■■□□□ 12.3
CDC40O60508 HMGCR-202ENST00000343975 3681 ntTSL 1 (best) BASIC7.51□□□□□ -1.214e-6■■□□□ 12.3
CDC40O60508 HNRNPD-212ENST00000515432 545 ntTSL 56.83□□□□□ -1.325e-6■■□□□ 12.3
CDC40O60508 HMGCR-209ENST00000511206 3395 ntAPPRIS P1 TSL 2 BASIC6.42□□□□□ -1.384e-6■■□□□ 12.3
CDC40O60508 VDAC1-205ENST00000466080 831 ntTSL 36.27□□□□□ -1.414e-6■■□□□ 12.3
CDC40O60508 SMARCAD1-203ENST00000394961 3778 ntTSL 25.67□□□□□ -1.54e-6■■□□□ 12.3
CDC40O60508 RPS25-206ENST00000532567 508 ntTSL 25.31□□□□□ -1.564e-6■■□□□ 12.3
CDC40O60508 SPATS2L-215ENST00000439395 561 ntTSL 45.15□□□□□ -1.594e-6■■□□□ 12.3
CDC40O60508 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC1.98□□□□□ -2.094e-6■■□□□ 12.3
CDC40O60508 SMARCAD1-202ENST00000359052 5017 ntAPPRIS ALT1 TSL 1 (best)1.32□□□□□ -2.24e-6■■□□□ 12.3
CDC40O60508 NAP1L4-220ENST00000532325 526 ntTSL 55.11□□□□□ -1.599e-7■■□□□ 12.3
CDC40O60508 NAP1L4-204ENST00000448187 888 ntTSL 53.57□□□□□ -1.849e-7■■□□□ 12.3
CDC40O60508 C3-204ENST00000594936 625 ntTSL 214.63□□□□□ -0.072e-15■■□□□ 12.3
CDC40O60508 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC18.89■□□□□ 0.615e-6■■□□□ 12.3
CDC40O60508 TARDBP-203ENST00000439080 1388 ntTSL 215.43■□□□□ 0.065e-6■■□□□ 12.3
CDC40O60508 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.145e-6■■□□□ 12.3
CDC40O60508 TARDBP-231ENST00000639599 1283 ntTSL 513.77□□□□□ -0.215e-6■■□□□ 12.3
CDC40O60508 TARDBP-202ENST00000315091 1835 ntTSL 5 BASIC11.44□□□□□ -0.585e-6■■□□□ 12.3
CDC40O60508 TARDBP-217ENST00000616545 920 ntTSL 5 BASIC10.62□□□□□ -0.715e-6■■□□□ 12.3
CDC40O60508 TARDBP-226ENST00000621790 1008 ntTSL 5 BASIC10.62□□□□□ -0.715e-6■■□□□ 12.3
CDC40O60508 TARDBP-221ENST00000619555 682 ntTSL 510.39□□□□□ -0.755e-6■■□□□ 12.3
CDC40O60508 TARDBP-206ENST00000473869 1946 ntTSL 59.9□□□□□ -0.835e-6■■□□□ 12.3
CDC40O60508 TARDBP-223ENST00000620632 706 ntTSL 39.85□□□□□ -0.835e-6■■□□□ 12.3
CDC40O60508 TARDBP-230ENST00000639083 2269 ntAPPRIS P1 TSL 5 BASIC9.8□□□□□ -0.845e-6■■□□□ 12.3
CDC40O60508 TARDBP-218ENST00000617172 980 ntTSL 58.96□□□□□ -0.985e-6■■□□□ 12.3
CDC40O60508 TARDBP-211ENST00000610369 563 ntTSL 58.96□□□□□ -0.985e-6■■□□□ 12.3
CDC40O60508 TARDBP-227ENST00000622057 706 ntTSL 58.72□□□□□ -1.015e-6■■□□□ 12.3
CDC40O60508 AL109811.4-201ENST00000614757 1793 ntTSL 5 BASIC8.65□□□□□ -1.025e-6■■□□□ 12.3
CDC40O60508 TARDBP-222ENST00000620505 657 ntTSL 58.2□□□□□ -1.15e-6■■□□□ 12.3
CDC40O60508 TARDBP-213ENST00000611963 739 ntTSL 57.37□□□□□ -1.235e-6■■□□□ 12.3
CDC40O60508 TARDBP-216ENST00000614494 515 ntTSL 56.73□□□□□ -1.335e-6■■□□□ 12.3
CDC40O60508 AL109811.4-202ENST00000611136 700 ntTSL 53.93□□□□□ -1.785e-6■■□□□ 12.3
CDC40O60508 AL109811.4-203ENST00000612542 554 ntAPPRIS P1 TSL 51.81□□□□□ -2.125e-6■■□□□ 12.3
CDC40O60508 TARDBP-208ENST00000477447 409 ntTSL 51.77□□□□□ -2.135e-6■■□□□ 12.3
Retrieved 100 of 5,364 protein–RNA pairs in 35 ms