RNA–Protein interactions for RNA: ENST00000611010.4

FDPS-220, Transcript of farnesyl diphosphate synthase, humanhuman

TSL 5 BASIC

Gene FDPS, Length 1,196 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FDPS-220ENST00000611010 NISCHQ9Y2I1 1504 aa30.39■■■□□ 2.46
FDPS-220ENST00000611010 ABCC9O60706 1549 aa27.6■■■□□ 2.01
FDPS-220ENST00000611010 CCDC180Q9P1Z9 1646 aa27.48■■□□□ 1.99
FDPS-220ENST00000611010 RB1CC1Q8TDY2 1594 aa26.16■■□□□ 1.78
FDPS-220ENST00000611010 DNAJC5BQ9UF47 199 aa26.11■■□□□ 1.77
FDPS-220ENST00000611010 NACADO15069 1562 aa25.91■■□□□ 1.74
FDPS-220ENST00000611010 UNC13AQ9UPW8 1703 aa25.82■■□□□ 1.72
FDPS-220ENST00000611010 BICRAQ9NZM4 1560 aa25.56■■□□□ 1.68
FDPS-220ENST00000611010 PABPN1Q86U42 306 aaKnown RBP eCLIP25.56■■□□□ 1.682e-8■□□□□ 9.5
FDPS-220ENST00000611010 MYO15BQ96JP2 1530 aa25.49■■□□□ 1.67
FDPS-220ENST00000611010 DCAF8L2P0C7V8 631 aa25.47■■□□□ 1.67
FDPS-220ENST00000611010 ZCCHC6Q5VYS8 1495 aaKnown RBP25.19■■□□□ 1.62
FDPS-220ENST00000611010 DCAF1Q9Y4B6 1507 aa25.09■■□□□ 1.61
FDPS-220ENST00000611010 SHROOM4Q9ULL8 1493 aa25.04■■□□□ 1.6
FDPS-220ENST00000611010 SCRIBQ14160 1630 aa25■■□□□ 1.59
FDPS-220ENST00000611010 CC2D2AQ9P2K1 1620 aa24.99■■□□□ 1.59
FDPS-220ENST00000611010 EIF4G1Q04637 1599 aaKnown RBP24.87■■□□□ 1.57
FDPS-220ENST00000611010 CECR2Q9BXF3 1484 aa24.86■■□□□ 1.57
FDPS-220ENST00000611010 DNAJC5Q9H3Z4 198 aa24.04■■□□□ 1.44
FDPS-220ENST00000611010 NCAPD3P42695 1498 aa23.9■■□□□ 1.42
FDPS-220ENST00000611010 CUX2O14529 1486 aa23.87■■□□□ 1.41
FDPS-220ENST00000611010 ATAD2BQ9ULI0 1458 aa23.83■■□□□ 1.41
FDPS-220ENST00000611010 SMARCA4P51532 1647 aa23.83■■□□□ 1.41
FDPS-220ENST00000611010 HMGXB3Q12766 1538 aa23.79■■□□□ 1.4
FDPS-220ENST00000611010 ERCC6Q03468 1493 aa23.76■■□□□ 1.39
FDPS-220ENST00000611010 SMARCA2P51531 1590 aa23.73■■□□□ 1.39
FDPS-220ENST00000611010 NESP48681 1621 aa23.7■■□□□ 1.39
FDPS-220ENST00000611010 THOC2Q8NI27 1593 aaKnown RBP23.61■■□□□ 1.37
FDPS-220ENST00000611010 PEG3Q9GZU2 1588 aa23.6■■□□□ 1.37
FDPS-220ENST00000611010 BAZ1AQ9NRL2 1556 aaPredicted RBP23.59■■□□□ 1.37
FDPS-220ENST00000611010 BAZ1BQ9UIG0 1483 aaKnown RBP23.56■■□□□ 1.36
FDPS-220ENST00000611010 KIF21AQ7Z4S6 1674 aa23.48■■□□□ 1.35
FDPS-220ENST00000611010 MROH2BQ7Z745 1585 aa23.46■■□□□ 1.35
FDPS-220ENST00000611010 LAMC3Q9Y6N6 1575 aa23.45■■□□□ 1.34
FDPS-220ENST00000611010 WIZO95785 1651 aa23.21■■□□□ 1.31
FDPS-220ENST00000611010 PDS5BQ9NTI5 1447 aa23.19■■□□□ 1.3
FDPS-220ENST00000611010 WDR62O43379 1518 aa23.14■■□□□ 1.3
FDPS-220ENST00000611010 CADPSQ9ULU8 1353 aa23.12■■□□□ 1.29
FDPS-220ENST00000611010 MRC2Q9UBG0 1479 aa23.11■■□□□ 1.29
FDPS-220ENST00000611010 CEP164Q9UPV0 1460 aa22.96■■□□□ 1.27
FDPS-220ENST00000611010 FANCD2Q9BXW9 1451 aa22.92■■□□□ 1.26
FDPS-220ENST00000611010 CFTRP13569 1480 aa22.87■■□□□ 1.25
FDPS-220ENST00000611010 TOP2AP11388 1531 aaKnown RBP22.84■■□□□ 1.25
FDPS-220ENST00000611010 TRIM41Q8WV44 630 aa22.84■■□□□ 1.25
FDPS-220ENST00000611010 URB2Q14146 1524 aaKnown RBP22.82■■□□□ 1.24
FDPS-220ENST00000611010 PRDM2Q13029 1718 aa22.82■■□□□ 1.24
FDPS-220ENST00000611010 RSF1Q96T23 1441 aaPredicted RBP22.82■■□□□ 1.24
FDPS-220ENST00000611010 RIMBP3CA6NJZ7 1639 aa22.57■■□□□ 1.2
FDPS-220ENST00000611010 RIMBP3BA6NNM3 1639 aa22.57■■□□□ 1.2
FDPS-220ENST00000611010 RIMBP3Q9UFD9 1639 aa22.57■■□□□ 1.2
FDPS-220ENST00000611010 ZNF608Q9ULD9 1512 aaPredicted RBP22.57■■□□□ 1.2
FDPS-220ENST00000611010 OSCARQ8IYS5 282 aa22.56■■□□□ 1.2
FDPS-220ENST00000611010 CCDC88BA6NC98 1476 aa22.54■■□□□ 1.2
FDPS-220ENST00000611010 TOPBP1Q92547 1522 aa22.5■■□□□ 1.19
FDPS-220ENST00000611010 EIF4G3O43432 1585 aaKnown RBP22.5■■□□□ 1.19
FDPS-220ENST00000611010 IFT140Q96RY7 1462 aa22.48■■□□□ 1.19
FDPS-220ENST00000611010 ARHGEF11O15085 1522 aa22.43■■□□□ 1.18
FDPS-220ENST00000611010 CHD1O14646 1710 aa22.41■■□□□ 1.18
FDPS-220ENST00000611010 DNMBPQ6XZF7 1577 aa22.41■■□□□ 1.18
FDPS-220ENST00000611010 TARBP1Q13395 1621 aaKnown RBP22.39■■□□□ 1.18
FDPS-220ENST00000611010 ABCC8Q09428 1581 aa22.29■■□□□ 1.16
FDPS-220ENST00000611010 POLA1P09884 1462 aaPredicted RBP22.26■■□□□ 1.15
FDPS-220ENST00000611010 AQRO60306 1485 aaKnown RBP eCLIP22.25■■□□□ 1.152e-7■■■■□ 26.3
FDPS-220ENST00000611010 ARAP1Q96P48 1450 aa22.22■■□□□ 1.15
FDPS-220ENST00000611010 RAD54L2Q9Y4B4 1467 aa22.16■■□□□ 1.14
FDPS-220ENST00000611010 CLASP1Q7Z460 1538 aa22.1■■□□□ 1.13
FDPS-220ENST00000611010 WDR97A6NE52 1622 aa22.09■■□□□ 1.13
FDPS-220ENST00000611010 CYB5RLQ6IPT4 315 aa22.08■■□□□ 1.13
FDPS-220ENST00000611010 SNAPC4Q5SXM2 1469 aa22.07■■□□□ 1.12
FDPS-220ENST00000611010 FGD5Q6ZNL6 1462 aa22.07■■□□□ 1.12
FDPS-220ENST00000611010 CUX1P39880 1505 aa22.06■■□□□ 1.12
FDPS-220ENST00000611010 TDRD9Q8NDG6 1382 aaKnown RBP22.04■■□□□ 1.12
FDPS-220ENST00000611010 SOGA1O94964 1423 aa22.03■■□□□ 1.12
FDPS-220ENST00000611010 PBRM1Q86U86 1689 aa22■■□□□ 1.11
FDPS-220ENST00000611010 FBLN2P98095 1184 aa21.99■■□□□ 1.11
FDPS-220ENST00000611010 MAGI1Q96QZ7 1491 aaPredicted RBP21.96■■□□□ 1.11
FDPS-220ENST00000611010 SYNJ1O43426 1573 aa21.95■■□□□ 1.11
FDPS-220ENST00000611010 GRIN2BQ13224 1484 aa21.91■■□□□ 1.1
FDPS-220ENST00000611010 ABCA5Q8WWZ7 1642 aa21.89■■□□□ 1.09
FDPS-220ENST00000611010 SYNJ2O15056 1496 aa21.89■■□□□ 1.09
FDPS-220ENST00000611010 TRHP20396 242 aaPredicted RBP21.86■■□□□ 1.09
FDPS-220ENST00000611010 GAPVD1Q14C86 1478 aa21.8■■□□□ 1.08
FDPS-220ENST00000611010 ABCA10Q8WWZ4 1543 aa21.8■■□□□ 1.08
FDPS-220ENST00000611010 CHMP7Q8WUX9 453 aaPredicted RBP21.78■■□□□ 1.08
FDPS-220ENST00000611010 ERCC6L2Q5T890 1561 aa21.77■■□□□ 1.08
FDPS-220ENST00000611010 ADAMTS12P58397 1594 aa21.74■■□□□ 1.07
FDPS-220ENST00000611010 CEP170Q5SW79 1584 aa21.7■■□□□ 1.06
FDPS-220ENST00000611010 BIVM-ERCC5R4GMW8 1640 aa21.69■■□□□ 1.06
FDPS-220ENST00000611010 GRIN2AQ12879 1464 aa21.68■■□□□ 1.06
FDPS-220ENST00000611010 SHROOM2Q13796 1616 aa21.66■■□□□ 1.06
FDPS-220ENST00000611010 TOP2BQ02880 1626 aa21.63■■□□□ 1.05
FDPS-220ENST00000611010 NUP160Q12769 1436 aa21.63■■□□□ 1.05
FDPS-220ENST00000611010 KIF13AQ9H1H9 1805 aa21.55■■□□□ 1.04
FDPS-220ENST00000611010 WRNQ14191 1432 aaPredicted RBP eCLIP21.55■■□□□ 1.04
FDPS-220ENST00000611010 ERICH3Q5RHP9 1530 aa21.51■■□□□ 1.03
FDPS-220ENST00000611010 FHAD1B1AJZ9 1412 aa21.49■■□□□ 1.03
FDPS-220ENST00000611010 RUSC2Q8N2Y8 1516 aa21.45■■□□□ 1.02
FDPS-220ENST00000611010 SUPT5HO00267 1087 aaKnown RBP21.44■■□□□ 1.02
FDPS-220ENST00000611010 PRG4Q92954 1404 aaPredicted RBP21.36■■□□□ 1.01
FDPS-220ENST00000611010 AEBP2Q6ZN18 517 aaPredicted RBP21.33■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms