RNA–Protein interactions for RNA: ENST00000509431.1

HMGCR-208, Transcript of 3-hydroxy-3-methylglutaryl-CoA reductase, humanhuman

TSL 2

Gene HMGCR, Length 421 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCR-208ENST00000509431 NISCHQ9Y2I1 1504 aa35.51■■■■□ 3.27
HMGCR-208ENST00000509431 ABCC9O60706 1549 aa33.3■■■□□ 2.92
HMGCR-208ENST00000509431 CCDC180Q9P1Z9 1646 aa32.4■■■□□ 2.78
HMGCR-208ENST00000509431 DNAJC5BQ9UF47 199 aa32.14■■■□□ 2.74
HMGCR-208ENST00000509431 RB1CC1Q8TDY2 1594 aa31.34■■■□□ 2.61
HMGCR-208ENST00000509431 NACADO15069 1562 aa30.88■■■□□ 2.53
HMGCR-208ENST00000509431 PABPN1Q86U42 306 aaKnown RBP eCLIP30.79■■■□□ 2.52
HMGCR-208ENST00000509431 UNC13AQ9UPW8 1703 aa30.57■■■□□ 2.48
HMGCR-208ENST00000509431 DNAJC5Q9H3Z4 198 aa30.4■■■□□ 2.46
HMGCR-208ENST00000509431 BICRAQ9NZM4 1560 aa30.4■■■□□ 2.46
HMGCR-208ENST00000509431 DCAF8L2P0C7V8 631 aa30.33■■■□□ 2.45
HMGCR-208ENST00000509431 CECR2Q9BXF3 1484 aa30.16■■■□□ 2.42
HMGCR-208ENST00000509431 MYO15BQ96JP2 1530 aa30.15■■■□□ 2.42
HMGCR-208ENST00000509431 CC2D2AQ9P2K1 1620 aa30.07■■■□□ 2.4
HMGCR-208ENST00000509431 SHROOM4Q9ULL8 1493 aa30.03■■■□□ 2.4
HMGCR-208ENST00000509431 EIF4G1Q04637 1599 aaKnown RBP29.76■■■□□ 2.35
HMGCR-208ENST00000509431 DCAF1Q9Y4B6 1507 aa29.35■■■□□ 2.29
HMGCR-208ENST00000509431 SCRIBQ14160 1630 aa29.34■■■□□ 2.29
HMGCR-208ENST00000509431 CUX2O14529 1486 aa29.27■■■□□ 2.28
HMGCR-208ENST00000509431 ZCCHC6Q5VYS8 1495 aaKnown RBP29.21■■■□□ 2.27
HMGCR-208ENST00000509431 ERCC6Q03468 1493 aa28.89■■■□□ 2.22
HMGCR-208ENST00000509431 TRIM41Q8WV44 630 aa28.55■■■□□ 2.16
HMGCR-208ENST00000509431 NCAPD3P42695 1498 aa28.5■■■□□ 2.15
HMGCR-208ENST00000509431 NESP48681 1621 aa28.29■■■□□ 2.12
HMGCR-208ENST00000509431 THOC2Q8NI27 1593 aaKnown RBP28.28■■■□□ 2.12
HMGCR-208ENST00000509431 ATAD2BQ9ULI0 1458 aa28.22■■■□□ 2.11
HMGCR-208ENST00000509431 HMGXB3Q12766 1538 aa28.21■■■□□ 2.11
HMGCR-208ENST00000509431 SMARCA2P51531 1590 aa28.14■■■□□ 2.1
HMGCR-208ENST00000509431 LAMC3Q9Y6N6 1575 aa28.04■■■□□ 2.08
HMGCR-208ENST00000509431 SMARCA4P51532 1647 aa27.93■■■□□ 2.06
HMGCR-208ENST00000509431 KIF21AQ7Z4S6 1674 aa27.93■■■□□ 2.06
HMGCR-208ENST00000509431 PDS5BQ9NTI5 1447 aa27.92■■■□□ 2.06
HMGCR-208ENST00000509431 BAZ1BQ9UIG0 1483 aaKnown RBP27.9■■■□□ 2.06
HMGCR-208ENST00000509431 BAZ1AQ9NRL2 1556 aaPredicted RBP27.77■■■□□ 2.04
HMGCR-208ENST00000509431 MRC2Q9UBG0 1479 aa27.71■■■□□ 2.03
HMGCR-208ENST00000509431 OSCARQ8IYS5 282 aa27.71■■■□□ 2.03
HMGCR-208ENST00000509431 PEG3Q9GZU2 1588 aa27.71■■■□□ 2.03
HMGCR-208ENST00000509431 WDR62O43379 1518 aa27.68■■■□□ 2.02
HMGCR-208ENST00000509431 CADPSQ9ULU8 1353 aa27.56■■■□□ 2
HMGCR-208ENST00000509431 RIMBP3CA6NJZ7 1639 aa27.43■■□□□ 1.98
HMGCR-208ENST00000509431 RIMBP3BA6NNM3 1639 aa27.43■■□□□ 1.98
HMGCR-208ENST00000509431 RIMBP3Q9UFD9 1639 aa27.43■■□□□ 1.98
HMGCR-208ENST00000509431 CEP164Q9UPV0 1460 aa27.38■■□□□ 1.97
HMGCR-208ENST00000509431 MROH2BQ7Z745 1585 aa27.3■■□□□ 1.96
HMGCR-208ENST00000509431 ARHGEF11O15085 1522 aa27.25■■□□□ 1.95
HMGCR-208ENST00000509431 FANCD2Q9BXW9 1451 aa27.24■■□□□ 1.95
HMGCR-208ENST00000509431 AEBP2Q6ZN18 517 aaPredicted RBP27.17■■□□□ 1.94
HMGCR-208ENST00000509431 TRHP20396 242 aaPredicted RBP27.12■■□□□ 1.93
HMGCR-208ENST00000509431 CYB5RLQ6IPT4 315 aa27.07■■□□□ 1.92
HMGCR-208ENST00000509431 URB2Q14146 1524 aaKnown RBP27.06■■□□□ 1.92
HMGCR-208ENST00000509431 CFTRP13569 1480 aa27.03■■□□□ 1.92
HMGCR-208ENST00000509431 WIZO95785 1651 aa26.92■■□□□ 1.9
HMGCR-208ENST00000509431 ARAP1Q96P48 1450 aa26.89■■□□□ 1.9
HMGCR-208ENST00000509431 IFT140Q96RY7 1462 aa26.89■■□□□ 1.9
HMGCR-208ENST00000509431 ZNF608Q9ULD9 1512 aaPredicted RBP26.87■■□□□ 1.89
HMGCR-208ENST00000509431 RSF1Q96T23 1441 aaPredicted RBP26.79■■□□□ 1.88
HMGCR-208ENST00000509431 EIF4G3O43432 1585 aaKnown RBP26.71■■□□□ 1.87
HMGCR-208ENST00000509431 CHD1O14646 1710 aa26.71■■□□□ 1.87
HMGCR-208ENST00000509431 PRDM2Q13029 1718 aa26.71■■□□□ 1.87
HMGCR-208ENST00000509431 TOPBP1Q92547 1522 aa26.6■■□□□ 1.85
HMGCR-208ENST00000509431 TOP2AP11388 1531 aaKnown RBP26.56■■□□□ 1.84
HMGCR-208ENST00000509431 ABCC8Q09428 1581 aa26.56■■□□□ 1.84
HMGCR-208ENST00000509431 FBLN2P98095 1184 aa26.53■■□□□ 1.84
HMGCR-208ENST00000509431 AQRO60306 1485 aaKnown RBP eCLIP26.49■■□□□ 1.831e-7■■■■□ 26.6
HMGCR-208ENST00000509431 TARBP1Q13395 1621 aaKnown RBP26.44■■□□□ 1.82
HMGCR-208ENST00000509431 DNMBPQ6XZF7 1577 aa26.43■■□□□ 1.82
HMGCR-208ENST00000509431 CLASP1Q7Z460 1538 aa26.4■■□□□ 1.82
HMGCR-208ENST00000509431 SYNJ1O43426 1573 aa26.33■■□□□ 1.8
HMGCR-208ENST00000509431 POLA1P09884 1462 aaPredicted RBP26.25■■□□□ 1.79
HMGCR-208ENST00000509431 CCDC88BA6NC98 1476 aa26.23■■□□□ 1.79
HMGCR-208ENST00000509431 SNAPC4Q5SXM2 1469 aa26.23■■□□□ 1.79
HMGCR-208ENST00000509431 WDR97A6NE52 1622 aa26.21■■□□□ 1.79
HMGCR-208ENST00000509431 CHMP7Q8WUX9 453 aaPredicted RBP26.21■■□□□ 1.79
HMGCR-208ENST00000509431 GAPVD1Q14C86 1478 aa26.19■■□□□ 1.78
HMGCR-208ENST00000509431 MAGI1Q96QZ7 1491 aaPredicted RBP26.17■■□□□ 1.78
HMGCR-208ENST00000509431 TDRD9Q8NDG6 1382 aaKnown RBP26.16■■□□□ 1.78
HMGCR-208ENST00000509431 RAD54L2Q9Y4B4 1467 aa26.12■■□□□ 1.77
HMGCR-208ENST00000509431 SOGA1O94964 1423 aa26.12■■□□□ 1.77
HMGCR-208ENST00000509431 ILDR1Q86SU0 546 aaPredicted RBP26.09■■□□□ 1.77
HMGCR-208ENST00000509431 SYNJ2O15056 1496 aa26.08■■□□□ 1.77
HMGCR-208ENST00000509431 GRIN2BQ13224 1484 aa26.04■■□□□ 1.76
HMGCR-208ENST00000509431 FGD5Q6ZNL6 1462 aa25.92■■□□□ 1.74
HMGCR-208ENST00000509431 KIF13AQ9H1H9 1805 aa25.91■■□□□ 1.74
HMGCR-208ENST00000509431 PBRM1Q86U86 1689 aa25.85■■□□□ 1.73
HMGCR-208ENST00000509431 ERCC6L2Q5T890 1561 aa25.82■■□□□ 1.72
HMGCR-208ENST00000509431 KDM4FA0A1W2PPD8 638 aa25.78■■□□□ 1.72
HMGCR-208ENST00000509431 CEP170Q5SW79 1584 aa25.75■■□□□ 1.71
HMGCR-208ENST00000509431 CUX1P39880 1505 aa25.73■■□□□ 1.71
HMGCR-208ENST00000509431 GRIN2AQ12879 1464 aa25.69■■□□□ 1.7
HMGCR-208ENST00000509431 SHROOM2Q13796 1616 aa25.67■■□□□ 1.7
HMGCR-208ENST00000509431 NUP160Q12769 1436 aa25.66■■□□□ 1.7
HMGCR-208ENST00000509431 ABCA5Q8WWZ7 1642 aa25.66■■□□□ 1.7
HMGCR-208ENST00000509431 ABCC10Q5T3U5 1492 aa25.66■■□□□ 1.7
HMGCR-208ENST00000509431 FAM69CQ0P6D2 419 aa25.64■■□□□ 1.7
HMGCR-208ENST00000509431 KDM6BO15054 1643 aa25.62■■□□□ 1.69
HMGCR-208ENST00000509431 ABCA10Q8WWZ4 1543 aa25.62■■□□□ 1.69
HMGCR-208ENST00000509431 MAPKBP1O60336 1514 aa25.55■■□□□ 1.68
HMGCR-208ENST00000509431 ADAMTS12P58397 1594 aa25.54■■□□□ 1.68
HMGCR-208ENST00000509431 DIP2BQ9P265 1576 aa25.54■■□□□ 1.68
HMGCR-208ENST00000509431 NPM1P06748 294 aaKnown RBP eCLIP25.52■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms