RNA–Protein interactions for RNA: ENST00000495308.5

FDPS-219, Transcript of farnesyl diphosphate synthase, humanhuman

TSL 2

Gene FDPS, Length 808 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FDPS-219ENST00000495308 NISCHQ9Y2I1 1504 aa32.91■■■□□ 2.86
FDPS-219ENST00000495308 CCDC180Q9P1Z9 1646 aa29.27■■■□□ 2.28
FDPS-219ENST00000495308 ABCC9O60706 1549 aa28.5■■■□□ 2.15
FDPS-219ENST00000495308 ZCCHC6Q5VYS8 1495 aaKnown RBP27.45■■□□□ 1.99
FDPS-219ENST00000495308 RB1CC1Q8TDY2 1594 aa27.45■■□□□ 1.99
FDPS-219ENST00000495308 DCAF8L2P0C7V8 631 aa27.42■■□□□ 1.98
FDPS-219ENST00000495308 NACADO15069 1562 aa27.42■■□□□ 1.98
FDPS-219ENST00000495308 MYO15BQ96JP2 1530 aa27.25■■□□□ 1.95
FDPS-219ENST00000495308 DCAF1Q9Y4B6 1507 aa27.2■■□□□ 1.94
FDPS-219ENST00000495308 UNC13AQ9UPW8 1703 aa26.99■■□□□ 1.91
FDPS-219ENST00000495308 SCRIBQ14160 1630 aa26.76■■□□□ 1.87
FDPS-219ENST00000495308 BICRAQ9NZM4 1560 aa26.66■■□□□ 1.86
FDPS-219ENST00000495308 PABPN1Q86U42 306 aaKnown RBP eCLIP26.62■■□□□ 1.85
FDPS-219ENST00000495308 SHROOM4Q9ULL8 1493 aa26.28■■□□□ 1.8
FDPS-219ENST00000495308 DNAJC5BQ9UF47 199 aa26.01■■□□□ 1.75
FDPS-219ENST00000495308 EIF4G1Q04637 1599 aaKnown RBP25.93■■□□□ 1.74
FDPS-219ENST00000495308 CC2D2AQ9P2K1 1620 aa25.81■■□□□ 1.72
FDPS-219ENST00000495308 CECR2Q9BXF3 1484 aa25.65■■□□□ 1.7
FDPS-219ENST00000495308 SMARCA4P51532 1647 aa25.56■■□□□ 1.68
FDPS-219ENST00000495308 BAZ1AQ9NRL2 1556 aaPredicted RBP25.51■■□□□ 1.67
FDPS-219ENST00000495308 MROH2BQ7Z745 1585 aa25.39■■□□□ 1.66
FDPS-219ENST00000495308 ATAD2BQ9ULI0 1458 aa25.34■■□□□ 1.65
FDPS-219ENST00000495308 SMARCA2P51531 1590 aa25.31■■□□□ 1.64
FDPS-219ENST00000495308 PEG3Q9GZU2 1588 aa25.27■■□□□ 1.64
FDPS-219ENST00000495308 NCAPD3P42695 1498 aa25.26■■□□□ 1.63
FDPS-219ENST00000495308 HMGXB3Q12766 1538 aa25.21■■□□□ 1.63
FDPS-219ENST00000495308 WIZO95785 1651 aa25.19■■□□□ 1.62
FDPS-219ENST00000495308 BAZ1BQ9UIG0 1483 aaKnown RBP25.15■■□□□ 1.62
FDPS-219ENST00000495308 RSF1Q96T23 1441 aaPredicted RBP25.1■■□□□ 1.61
FDPS-219ENST00000495308 TOP2AP11388 1531 aaKnown RBP24.86■■□□□ 1.57
FDPS-219ENST00000495308 NESP48681 1621 aa24.72■■□□□ 1.55
FDPS-219ENST00000495308 LAMC3Q9Y6N6 1575 aa24.64■■□□□ 1.54
FDPS-219ENST00000495308 SUPT5HO00267 1087 aaKnown RBP24.56■■□□□ 1.52
FDPS-219ENST00000495308 CCDC88BA6NC98 1476 aa24.56■■□□□ 1.52
FDPS-219ENST00000495308 CADPSQ9ULU8 1353 aa24.54■■□□□ 1.52
FDPS-219ENST00000495308 ERCC6Q03468 1493 aa24.53■■□□□ 1.52
FDPS-219ENST00000495308 KIF21AQ7Z4S6 1674 aa24.51■■□□□ 1.51
FDPS-219ENST00000495308 PRDM2Q13029 1718 aa24.43■■□□□ 1.5
FDPS-219ENST00000495308 CFTRP13569 1480 aa24.43■■□□□ 1.5
FDPS-219ENST00000495308 PDS5BQ9NTI5 1447 aa24.41■■□□□ 1.5
FDPS-219ENST00000495308 THOC2Q8NI27 1593 aaKnown RBP24.35■■□□□ 1.49
FDPS-219ENST00000495308 FANCD2Q9BXW9 1451 aa24.3■■□□□ 1.48
FDPS-219ENST00000495308 CEP164Q9UPV0 1460 aa24.26■■□□□ 1.47
FDPS-219ENST00000495308 CUX2O14529 1486 aa24.2■■□□□ 1.47
FDPS-219ENST00000495308 MRC2Q9UBG0 1479 aa24.19■■□□□ 1.46
FDPS-219ENST00000495308 WDR62O43379 1518 aa24.14■■□□□ 1.45
FDPS-219ENST00000495308 URB2Q14146 1524 aaKnown RBP24.08■■□□□ 1.45
FDPS-219ENST00000495308 DNMBPQ6XZF7 1577 aa23.94■■□□□ 1.42
FDPS-219ENST00000495308 TOPBP1Q92547 1522 aa23.94■■□□□ 1.42
FDPS-219ENST00000495308 ABCC8Q09428 1581 aa23.87■■□□□ 1.41
FDPS-219ENST00000495308 CUX1P39880 1505 aa23.82■■□□□ 1.4
FDPS-219ENST00000495308 POLA1P09884 1462 aaPredicted RBP23.74■■□□□ 1.39
FDPS-219ENST00000495308 IFT140Q96RY7 1462 aa23.72■■□□□ 1.39
FDPS-219ENST00000495308 FGD5Q6ZNL6 1462 aa23.71■■□□□ 1.39
FDPS-219ENST00000495308 TARBP1Q13395 1621 aaKnown RBP23.7■■□□□ 1.39
FDPS-219ENST00000495308 SYNJ1O43426 1573 aa23.69■■□□□ 1.38
FDPS-219ENST00000495308 BIVM-ERCC5R4GMW8 1640 aa23.68■■□□□ 1.38
FDPS-219ENST00000495308 WRNQ14191 1432 aaPredicted RBP eCLIP23.67■■□□□ 1.38
FDPS-219ENST00000495308 ZNF608Q9ULD9 1512 aaPredicted RBP23.66■■□□□ 1.38
FDPS-219ENST00000495308 RAD54L2Q9Y4B4 1467 aa23.65■■□□□ 1.38
FDPS-219ENST00000495308 TOP2BQ02880 1626 aa23.65■■□□□ 1.38
FDPS-219ENST00000495308 EIF4G3O43432 1585 aaKnown RBP23.62■■□□□ 1.37
FDPS-219ENST00000495308 SOGA1O94964 1423 aa23.6■■□□□ 1.37
FDPS-219ENST00000495308 WDR97A6NE52 1622 aa23.59■■□□□ 1.37
FDPS-219ENST00000495308 AQRO60306 1485 aaKnown RBP eCLIP23.51■■□□□ 1.359e-9■■■■■ 27.3
FDPS-219ENST00000495308 TDRD9Q8NDG6 1382 aaKnown RBP23.48■■□□□ 1.35
FDPS-219ENST00000495308 ABCA10Q8WWZ4 1543 aa23.45■■□□□ 1.34
FDPS-219ENST00000495308 PBRM1Q86U86 1689 aa23.44■■□□□ 1.34
FDPS-219ENST00000495308 ABCA5Q8WWZ7 1642 aa23.42■■□□□ 1.34
FDPS-219ENST00000495308 GAPVD1Q14C86 1478 aa23.36■■□□□ 1.33
FDPS-219ENST00000495308 CHD1O14646 1710 aa23.35■■□□□ 1.33
FDPS-219ENST00000495308 GRIN2BQ13224 1484 aa23.32■■□□□ 1.32
FDPS-219ENST00000495308 SNAPC4Q5SXM2 1469 aa23.32■■□□□ 1.32
FDPS-219ENST00000495308 DNAJC5Q9H3Z4 198 aa23.28■■□□□ 1.32
FDPS-219ENST00000495308 MAGI1Q96QZ7 1491 aaPredicted RBP23.25■■□□□ 1.31
FDPS-219ENST00000495308 ADAMTS12P58397 1594 aa23.19■■□□□ 1.3
FDPS-219ENST00000495308 FBLN2P98095 1184 aa23.19■■□□□ 1.3
FDPS-219ENST00000495308 ERICH3Q5RHP9 1530 aa23.18■■□□□ 1.3
FDPS-219ENST00000495308 OSCARQ8IYS5 282 aa23.17■■□□□ 1.3
FDPS-219ENST00000495308 SYNJ2O15056 1496 aa23.17■■□□□ 1.3
FDPS-219ENST00000495308 TRIM41Q8WV44 630 aa23.16■■□□□ 1.3
FDPS-219ENST00000495308 KIF27Q86VH2 1401 aa23.14■■□□□ 1.29
FDPS-219ENST00000495308 CHMP7Q8WUX9 453 aaPredicted RBP23.11■■□□□ 1.29
FDPS-219ENST00000495308 FHAD1B1AJZ9 1412 aa23.07■■□□□ 1.28
FDPS-219ENST00000495308 GRIN2AQ12879 1464 aa23.05■■□□□ 1.28
FDPS-219ENST00000495308 CUL7Q14999 1698 aa23.05■■□□□ 1.28
FDPS-219ENST00000495308 RUSC2Q8N2Y8 1516 aa23.04■■□□□ 1.28
FDPS-219ENST00000495308 IGF1RP08069 1367 aa23.02■■□□□ 1.28
FDPS-219ENST00000495308 CLASP1Q7Z460 1538 aa23.01■■□□□ 1.27
FDPS-219ENST00000495308 CEP170Q5SW79 1584 aa22.98■■□□□ 1.27
FDPS-219ENST00000495308 CHIC1Q5VXU3 224 aa22.96■■□□□ 1.27
FDPS-219ENST00000495308 RIMBP3CA6NJZ7 1639 aa22.93■■□□□ 1.26
FDPS-219ENST00000495308 RIMBP3BA6NNM3 1639 aa22.93■■□□□ 1.26
FDPS-219ENST00000495308 RIMBP3Q9UFD9 1639 aa22.93■■□□□ 1.26
FDPS-219ENST00000495308 NUP160Q12769 1436 aa22.91■■□□□ 1.26
FDPS-219ENST00000495308 CARMIL1Q5VZK9 1371 aa22.89■■□□□ 1.26
FDPS-219ENST00000495308 ARHGEF11O15085 1522 aa22.89■■□□□ 1.26
FDPS-219ENST00000495308 RAPGEF2Q9Y4G8 1499 aa22.79■■□□□ 1.24
FDPS-219ENST00000495308 SHROOM2Q13796 1616 aa22.79■■□□□ 1.24
FDPS-219ENST00000495308 EEA1Q15075 1411 aa22.75■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms