Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 HSP90B1-206ENST00000550479 698 ntTSL 27.45□□□□□ -1.222e-31■■■■□ 23.4
SMNDC1O75940 P4HB-206ENST00000471535 579 ntTSL 421.12■□□□□ 0.973e-8■■■■□ 23.4
SMNDC1O75940 P4HB-205ENST00000467086 785 ntTSL 520.96■□□□□ 0.953e-8■■■■□ 23.4
SMNDC1O75940 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.753e-8■■■■□ 23.4
SMNDC1O75940 P4HB-219ENST00000574914 571 ntTSL 418.82■□□□□ 0.63e-8■■■■□ 23.4
SMNDC1O75940 P4HB-216ENST00000571617 505 ntTSL 318.82■□□□□ 0.63e-8■■■■□ 23.4
SMNDC1O75940 P4HB-204ENST00000466567 872 ntTSL 218.82■□□□□ 0.63e-8■■■■□ 23.4
SMNDC1O75940 P4HB-224ENST00000576541 571 ntTSL 518.82■□□□□ 0.63e-8■■■■□ 23.4
SMNDC1O75940 P4HB-222ENST00000576380 943 ntTSL 318.1■□□□□ 0.493e-8■■■■□ 23.4
SMNDC1O75940 P4HB-217ENST00000573778 688 ntTSL 517.84■□□□□ 0.453e-8■■■■□ 23.4
SMNDC1O75940 P4HB-223ENST00000576390 439 ntTSL 4 BASIC17.05■□□□□ 0.323e-8■■■■□ 23.4
SMNDC1O75940 P4HB-221ENST00000576052 562 ntTSL 417.05■□□□□ 0.323e-8■■■■□ 23.4
SMNDC1O75940 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC17.02■□□□□ 0.323e-8■■■■□ 23.4
SMNDC1O75940 P4HB-220ENST00000575069 2453 ntTSL 214.89□□□□□ -0.033e-8■■■■□ 23.4
SMNDC1O75940 P4HB-218ENST00000574007 1053 ntTSL 212.57□□□□□ -0.43e-8■■■■□ 23.4
SMNDC1O75940 CDKAL1-202ENST00000378610 3115 ntAPPRIS P1 TSL 2 BASIC7.38□□□□□ -1.237e-8■■■■□ 23.4
SMNDC1O75940 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.377e-8■■■■□ 23.4
SMNDC1O75940 SNORA50C-201ENST00000408535 133 ntBASIC13.1□□□□□ -0.311e-323■■■■□ 23.4
SMNDC1O75940 SNORA50.1-201ENST00000628590 135 ntBASIC13.1□□□□□ -0.311e-323■■■■□ 23.4
SMNDC1O75940 C7orf43-203ENST00000419037 2200 ntTSL 522.29■■□□□ 1.169e-7■■■■□ 23.4
SMNDC1O75940 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.059e-7■■■■□ 23.4
SMNDC1O75940 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19.92■□□□□ 0.789e-7■■■■□ 23.4
SMNDC1O75940 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC18.19■□□□□ 0.51e-323■■■■□ 23.3
SMNDC1O75940 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC16■□□□□ 0.151e-323■■■■□ 23.3
SMNDC1O75940 RALGAPA1-201ENST00000307138 7911 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.131e-323■■■■□ 23.3
SMNDC1O75940 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC6.89□□□□□ -1.311e-323■■■■□ 23.3
SMNDC1O75940 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC5.34□□□□□ -1.551e-323■■■■□ 23.3
SMNDC1O75940 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.49■□□□□ 0.551e-6■■■■□ 23.3
SMNDC1O75940 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC23.13■■□□□ 1.298e-8■■■■□ 23.3
SMNDC1O75940 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC19.52■□□□□ 0.718e-8■■■■□ 23.3
SMNDC1O75940 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC18.25■□□□□ 0.518e-8■■■■□ 23.3
SMNDC1O75940 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC13.96□□□□□ -0.178e-8■■■■□ 23.3
SMNDC1O75940 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.48e-8■■■■□ 23.3
SMNDC1O75940 MTA1-211ENST00000481206 842 ntTSL 218.52■□□□□ 0.566e-8■■■■□ 23.3
SMNDC1O75940 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.282e-13■■■■□ 23.3
SMNDC1O75940 DDX5-210ENST00000578804 2021 ntTSL 1 (best) BASIC13.84□□□□□ -0.192e-13■■■■□ 23.3
SMNDC1O75940 DDX5-202ENST00000450599 2077 ntTSL 2 BASIC12.02□□□□□ -0.492e-13■■■■□ 23.3
SMNDC1O75940 DDX5-218ENST00000581693 2156 ntTSL 511.25□□□□□ -0.612e-13■■■■□ 23.3
SMNDC1O75940 DDX5-203ENST00000540698 2225 ntTSL 511.23□□□□□ -0.612e-13■■■■□ 23.3
SMNDC1O75940 DDX5-208ENST00000578491 463 ntTSL 210.36□□□□□ -0.757e-28■■■■□ 23.3
SMNDC1O75940 DDX5-215ENST00000581230 3558 ntTSL 29.05□□□□□ -0.962e-13■■■■□ 23.3
SMNDC1O75940 DDX5-209ENST00000578758 667 ntTSL 28.89□□□□□ -0.997e-28■■■■□ 23.3
SMNDC1O75940 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.182e-6■■■■□ 23.3
SMNDC1O75940 FLNC-202ENST00000346177 9042 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.32e-6■■■■□ 23.3
SMNDC1O75940 CYHR1-206ENST00000526887 1012 ntTSL 315.57■□□□□ 0.084e-7■■■■□ 23.3
SMNDC1O75940 NADK-214ENST00000497186 683 ntTSL 312.98□□□□□ -0.334e-6■■■■□ 23.3
SMNDC1O75940 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC12.57□□□□□ -0.41e-11■■■■□ 23.3
SMNDC1O75940 SF3B1-211ENST00000487698 2127 ntTSL 1 (best) BASIC8.72□□□□□ -1.011e-11■■■■□ 23.3
SMNDC1O75940 SF3B1-201ENST00000335508 6526 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.371e-11■■■■□ 23.3
SMNDC1O75940 SF3B1-208ENST00000470268 2003 ntTSL 25.33□□□□□ -1.561e-11■■■■□ 23.3
SMNDC1O75940 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.83□□□□□ -1.641e-11■■■■□ 23.3
SMNDC1O75940 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC15.83■□□□□ 0.122e-8■■■■□ 23.2
SMNDC1O75940 RANBP1-213ENST00000486575 2177 ntTSL 221.63■■□□□ 1.057e-10■■■■□ 23.2
SMNDC1O75940 VCP-201ENST00000358901 4370 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.162e-7■■■■□ 23.2
SMNDC1O75940 VCP-207ENST00000493886 2942 ntTSL 214.04□□□□□ -0.162e-7■■■■□ 23.2
SMNDC1O75940 MTA1-210ENST00000481012 987 ntTSL 515.06■□□□□ 07e-7■■■■□ 23.2
SMNDC1O75940 MTA1-204ENST00000424723 904 ntTSL 1 (best)13.8□□□□□ -0.27e-7■■■■□ 23.2
SMNDC1O75940 MTA1-219ENST00000551236 461 ntTSL 310.84□□□□□ -0.677e-7■■■■□ 23.2
SMNDC1O75940 TEX22-202ENST00000548638 508 ntTSL 510.61□□□□□ -0.717e-7■■■■□ 23.2
SMNDC1O75940 SNORD24-201ENST00000383884 75 ntBASIC3.21□□□□□ -1.91e-71■■■■□ 23.1
SMNDC1O75940 RPL17-201ENST00000578528 481 ntTSL 320.63■□□□□ 0.891e-323■■■■□ 23.1
SMNDC1O75940 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.441e-323■■■■□ 23.1
SMNDC1O75940 RPL17-206ENST00000579495 914 ntTSL 217.73■□□□□ 0.431e-323■■■■□ 23.1
SMNDC1O75940 RPL17-202ENST00000578532 684 ntTSL 217.18■□□□□ 0.341e-323■■■■□ 23.1
SMNDC1O75940 RPL17-218ENST00000583637 758 ntTSL 317.18■□□□□ 0.341e-323■■■■□ 23.1
SMNDC1O75940 RPL17-209ENST00000580387 827 ntTSL 515.42■□□□□ 0.061e-323■■■■□ 23.1
SMNDC1O75940 RPL17-223ENST00000618613 856 ntAPPRIS P1 TSL 315.16■□□□□ 0.021e-323■■■■□ 23.1
SMNDC1O75940 RPL17-221ENST00000615760 650 ntTSL 315.14■□□□□ 0.011e-323■■■■□ 23.1
SMNDC1O75940 RPL17-C18orf32-201ENST00000332968 948 ntTSL 5 BASIC10.78□□□□□ -0.681e-323■■■■□ 23.1
SMNDC1O75940 RPL17-220ENST00000615479 586 ntTSL 510.49□□□□□ -0.731e-323■■■■□ 23.1
SMNDC1O75940 RPL17-211ENST00000581305 593 ntTSL 510.11□□□□□ -0.791e-323■■■■□ 23.1
SMNDC1O75940 RPL17-224ENST00000618619 747 ntAPPRIS P1 TSL 5 BASIC9.34□□□□□ -0.911e-323■■■■□ 23.1
SMNDC1O75940 RPL17-222ENST00000617346 795 ntTSL 59.31□□□□□ -0.921e-323■■■■□ 23.1
SMNDC1O75940 RPL17-207ENST00000580210 705 ntTSL 2 BASIC8.96□□□□□ -0.981e-323■■■■□ 23.1
SMNDC1O75940 RPL17-205ENST00000579408 859 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.031e-323■■■■□ 23.1
SMNDC1O75940 RPL17-212ENST00000581373 584 ntTSL 2 BASIC7.8□□□□□ -1.161e-323■■■■□ 23.1
SMNDC1O75940 RPL17-215ENST00000582782 562 ntTSL 37.61□□□□□ -1.191e-323■■■■□ 23.1
SMNDC1O75940 RPL17-208ENST00000580261 669 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.281e-323■■■■□ 23.1
SMNDC1O75940 RPL17-203ENST00000578966 563 ntTSL 1 (best)6.91□□□□□ -1.31e-323■■■■□ 23.1
SMNDC1O75940 RPL17-217ENST00000583036 576 ntTSL 36.54□□□□□ -1.361e-323■■■■□ 23.1
SMNDC1O75940 SNORD58B-201ENST00000607313 66 ntBASIC5.34□□□□□ -1.551e-323■■■■□ 23.1
SMNDC1O75940 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC16.8■□□□□ 0.288e-73■■■■□ 23.1
SMNDC1O75940 SNHG10-203ENST00000554169 981 ntTSL 212.56□□□□□ -0.48e-73■■■■□ 23.1
SMNDC1O75940 SNHG10-204ENST00000555866 221 ntTSL 212.53□□□□□ -0.48e-73■■■■□ 23.1
SMNDC1O75940 SNHG10-202ENST00000553559 428 ntTSL 311.94□□□□□ -0.58e-73■■■■□ 23.1
SMNDC1O75940 SCARNA13-201ENST00000516672 275 ntBASIC2.93□□□□□ -1.948e-73■■■■□ 23.1
SMNDC1O75940 ADAMTSL4-206ENST00000489159 1803 ntTSL 217.37■□□□□ 0.371e-6■■■■□ 23.1
SMNDC1O75940 EIF4A1-216ENST00000580888 710 ntTSL 216.61■□□□□ 0.256e-7■■■■□ 23.1
SMNDC1O75940 EIF4A1-236ENST00000584901 1021 ntTSL 210.38□□□□□ -0.756e-7■■■■□ 23.1
SMNDC1O75940 EIF4A1-229ENST00000583802 563 ntTSL 49.45□□□□□ -0.96e-7■■■■□ 23.1
SMNDC1O75940 EIF4A1-233ENST00000584784 818 ntTSL 58.51□□□□□ -1.056e-7■■■■□ 23.1
SMNDC1O75940 EIF4A1-209ENST00000578495 916 ntTSL 58.46□□□□□ -1.066e-7■■■■□ 23.1
SMNDC1O75940 EIF4A1-237ENST00000585024 577 ntTSL 47.76□□□□□ -1.176e-7■■■■□ 23.1
SMNDC1O75940 EIF4A1-211ENST00000578754 547 ntTSL 44.83□□□□□ -1.646e-7■■■■□ 23.1
SMNDC1O75940 MED15-210ENST00000432052 598 ntTSL 418.91■□□□□ 0.622e-12■■■■□ 23.1
SMNDC1O75940 MED15-225ENST00000477824 571 ntTSL 518.75■□□□□ 0.592e-12■■■■□ 23.1
SMNDC1O75940 MED15-215ENST00000444094 551 ntTSL 417.77■□□□□ 0.442e-12■■■■□ 23.1
SMNDC1O75940 MED15-205ENST00000414658 717 ntTSL 316.78■□□□□ 0.282e-12■■■■□ 23.1
SMNDC1O75940 MED15-221ENST00000473028 556 ntTSL 415.9■□□□□ 0.142e-12■■■■□ 23.1
SMNDC1O75940 MED15-207ENST00000423862 581 ntTSL 315.67■□□□□ 0.12e-12■■■■□ 23.1
Retrieved 100 of 11,362 protein–RNA pairs in 105 ms