RNA–Protein interactions for RNA: ENST00000487698.5

SF3B1-211, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-211ENST00000487698 NISCHQ9Y2I1 1504 aa21.57■■□□□ 1.04
SF3B1-211ENST00000487698 CCDC180Q9P1Z9 1646 aa18.87■□□□□ 0.61
SF3B1-211ENST00000487698 ZCCHC6Q5VYS8 1495 aaKnown RBP18.15■□□□□ 0.5
SF3B1-211ENST00000487698 DCAF1Q9Y4B6 1507 aa17.87■□□□□ 0.45
SF3B1-211ENST00000487698 ABCC9O60706 1549 aa17.73■□□□□ 0.43
SF3B1-211ENST00000487698 MYO15BQ96JP2 1530 aa17.66■□□□□ 0.42
SF3B1-211ENST00000487698 DCAF8L2P0C7V8 631 aa17.63■□□□□ 0.41
SF3B1-211ENST00000487698 NACADO15069 1562 aa17.52■□□□□ 0.4
SF3B1-211ENST00000487698 SHROOM4Q9ULL8 1493 aa17.49■□□□□ 0.39
SF3B1-211ENST00000487698 RB1CC1Q8TDY2 1594 aa17.36■□□□□ 0.37
SF3B1-211ENST00000487698 SCRIBQ14160 1630 aa17.29■□□□□ 0.36
SF3B1-211ENST00000487698 UNC13AQ9UPW8 1703 aa17.1■□□□□ 0.33
SF3B1-211ENST00000487698 BICRAQ9NZM4 1560 aa16.88■□□□□ 0.29
SF3B1-211ENST00000487698 SUPT5HO00267 1087 aaKnown RBP16.81■□□□□ 0.28
SF3B1-211ENST00000487698 CECR2Q9BXF3 1484 aa16.74■□□□□ 0.27
SF3B1-211ENST00000487698 RSF1Q96T23 1441 aaPredicted RBP16.71■□□□□ 0.27
SF3B1-211ENST00000487698 PABPN1Q86U42 306 aaKnown RBP eCLIP16.66■□□□□ 0.26
SF3B1-211ENST00000487698 MROH2BQ7Z745 1585 aa16.66■□□□□ 0.26
SF3B1-211ENST00000487698 BAZ1AQ9NRL2 1556 aaPredicted RBP16.66■□□□□ 0.26
SF3B1-211ENST00000487698 SMARCA4P51532 1647 aa16.6■□□□□ 0.25
SF3B1-211ENST00000487698 WIZO95785 1651 aa16.54■□□□□ 0.24
SF3B1-211ENST00000487698 PEG3Q9GZU2 1588 aa16.43■□□□□ 0.22
SF3B1-211ENST00000487698 TOP2AP11388 1531 aaKnown RBP16.37■□□□□ 0.21
SF3B1-211ENST00000487698 EIF4G1Q04637 1599 aaKnown RBP16.34■□□□□ 0.21
SF3B1-211ENST00000487698 SMARCA2P51531 1590 aa16.3■□□□□ 0.2
SF3B1-211ENST00000487698 ATAD2BQ9ULI0 1458 aa16.29■□□□□ 0.2
SF3B1-211ENST00000487698 BAZ1BQ9UIG0 1483 aaKnown RBP16.19■□□□□ 0.18
SF3B1-211ENST00000487698 HMGXB3Q12766 1538 aa16.17■□□□□ 0.18
SF3B1-211ENST00000487698 CCDC88BA6NC98 1476 aa16.17■□□□□ 0.18
SF3B1-211ENST00000487698 NCAPD3P42695 1498 aa16.16■□□□□ 0.18
SF3B1-211ENST00000487698 CHIC1Q5VXU3 224 aa16.14■□□□□ 0.17
SF3B1-211ENST00000487698 CC2D2AQ9P2K1 1620 aa16.1■□□□□ 0.17
SF3B1-211ENST00000487698 ABCC8Q09428 1581 aa15.84■□□□□ 0.13
SF3B1-211ENST00000487698 PRDM2Q13029 1718 aa15.82■□□□□ 0.12
SF3B1-211ENST00000487698 TRIM41Q8WV44 630 aa15.82■□□□□ 0.12
SF3B1-211ENST00000487698 CFTRP13569 1480 aa15.8■□□□□ 0.12
SF3B1-211ENST00000487698 WRNQ14191 1432 aaPredicted RBP eCLIP15.72■□□□□ 0.11
SF3B1-211ENST00000487698 CADPSQ9ULU8 1353 aa15.71■□□□□ 0.11
SF3B1-211ENST00000487698 SYNJ1O43426 1573 aa15.7■□□□□ 0.1
SF3B1-211ENST00000487698 BIVM-ERCC5R4GMW8 1640 aa15.65■□□□□ 0.1
SF3B1-211ENST00000487698 TOP2BQ02880 1626 aa15.65■□□□□ 0.1
SF3B1-211ENST00000487698 LAMC3Q9Y6N6 1575 aa15.63■□□□□ 0.09
SF3B1-211ENST00000487698 DNAJC5BQ9UF47 199 aa15.62■□□□□ 0.09
SF3B1-211ENST00000487698 NESP48681 1621 aa15.59■□□□□ 0.09
SF3B1-211ENST00000487698 CUX1P39880 1505 aa15.59■□□□□ 0.09
SF3B1-211ENST00000487698 FANCD2Q9BXW9 1451 aa15.55■□□□□ 0.08
SF3B1-211ENST00000487698 SOGA1O94964 1423 aa15.51■□□□□ 0.07
SF3B1-211ENST00000487698 EEA1Q15075 1411 aa15.5■□□□□ 0.07
SF3B1-211ENST00000487698 FAM9AQ8IZU1 332 aaPredicted RBP15.5■□□□□ 0.07
SF3B1-211ENST00000487698 LOC105371045A0A1W2PR82 267 aa15.49■□□□□ 0.07
SF3B1-211ENST00000487698 RUSC2Q8N2Y8 1516 aa15.47■□□□□ 0.07
SF3B1-211ENST00000487698 KIF21AQ7Z4S6 1674 aa15.46■□□□□ 0.07
SF3B1-211ENST00000487698 CEP164Q9UPV0 1460 aa15.46■□□□□ 0.06
SF3B1-211ENST00000487698 DNMBPQ6XZF7 1577 aa15.45■□□□□ 0.06
SF3B1-211ENST00000487698 PDS5BQ9NTI5 1447 aa15.44■□□□□ 0.06
SF3B1-211ENST00000487698 TOPBP1Q92547 1522 aa15.41■□□□□ 0.06
SF3B1-211ENST00000487698 FGD5Q6ZNL6 1462 aa15.4■□□□□ 0.06
SF3B1-211ENST00000487698 URB2Q14146 1524 aaKnown RBP15.38■□□□□ 0.05
SF3B1-211ENST00000487698 CSRNP3Q8WYN3 585 aa15.36■□□□□ 0.05
SF3B1-211ENST00000487698 KIF21BO75037 1637 aa15.36■□□□□ 0.05
SF3B1-211ENST00000487698 POLA1P09884 1462 aaPredicted RBP15.33■□□□□ 0.04
SF3B1-211ENST00000487698 KIF27Q86VH2 1401 aa15.31■□□□□ 0.04
SF3B1-211ENST00000487698 WDR97A6NE52 1622 aa15.3■□□□□ 0.04
SF3B1-211ENST00000487698 GOLGA3Q08378 1498 aa15.29■□□□□ 0.04
SF3B1-211ENST00000487698 MRC2Q9UBG0 1479 aa15.28■□□□□ 0.04
SF3B1-211ENST00000487698 ABCA10Q8WWZ4 1543 aa15.27■□□□□ 0.04
SF3B1-211ENST00000487698 CUX2O14529 1486 aa15.27■□□□□ 0.03
SF3B1-211ENST00000487698 PRXQ9BXM0 1461 aa15.25■□□□□ 0.03
SF3B1-211ENST00000487698 RAD54L2Q9Y4B4 1467 aa15.25■□□□□ 0.03
SF3B1-211ENST00000487698 EHMT2Q96KQ7 1210 aa15.25■□□□□ 0.03
SF3B1-211ENST00000487698 ERICH3Q5RHP9 1530 aa15.24■□□□□ 0.03
SF3B1-211ENST00000487698 WDR62O43379 1518 aa15.23■□□□□ 0.03
SF3B1-211ENST00000487698 TNIKQ9UKE5 1360 aa15.23■□□□□ 0.03
SF3B1-211ENST00000487698 RAPGEF2Q9Y4G8 1499 aa15.22■□□□□ 0.03
SF3B1-211ENST00000487698 THOC2Q8NI27 1593 aaKnown RBP15.21■□□□□ 0.03
SF3B1-211ENST00000487698 TARBP1Q13395 1621 aaKnown RBP15.21■□□□□ 0.03
SF3B1-211ENST00000487698 ABCA5Q8WWZ7 1642 aa15.19■□□□□ 0.02
SF3B1-211ENST00000487698 ERCC6Q03468 1493 aa15.18■□□□□ 0.02
SF3B1-211ENST00000487698 IGF1RP08069 1367 aa15.17■□□□□ 0.02
SF3B1-211ENST00000487698 CEP162Q5TB80 1403 aa15.16■□□□□ 0.02
SF3B1-211ENST00000487698 CUL7Q14999 1698 aa15.13■□□□□ 0.01
SF3B1-211ENST00000487698 UBTFP17480 764 aaKnown RBP15.13■□□□□ 0.01
SF3B1-211ENST00000487698 GAPVD1Q14C86 1478 aa15.09■□□□□ 0.01
SF3B1-211ENST00000487698 IFT140Q96RY7 1462 aa15.09■□□□□ 0.01
SF3B1-211ENST00000487698 PBRM1Q86U86 1689 aa15.08■□□□□ 0
SF3B1-211ENST00000487698 CARMIL1Q5VZK9 1371 aa15.08■□□□□ 0
SF3B1-211ENST00000487698 TDRD9Q8NDG6 1382 aaKnown RBP15.07■□□□□ 0
SF3B1-211ENST00000487698 CLIP1P30622 1438 aa15.03■□□□□ -0
SF3B1-211ENST00000487698 ZNF608Q9ULD9 1512 aaPredicted RBP15□□□□□ -0.01
SF3B1-211ENST00000487698 EIF4G3O43432 1585 aaKnown RBP15□□□□□ -0.01
SF3B1-211ENST00000487698 AQRO60306 1485 aaKnown RBP eCLIP14.99□□□□□ -0.013e-9■■□□□ 14.5
SF3B1-211ENST00000487698 CTTNBP2Q8WZ74 1663 aa14.98□□□□□ -0.01
SF3B1-211ENST00000487698 ADAMTS12P58397 1594 aa14.98□□□□□ -0.01
SF3B1-211ENST00000487698 GRIN2BQ13224 1484 aa14.97□□□□□ -0.01
SF3B1-211ENST00000487698 FHAD1B1AJZ9 1412 aa14.92□□□□□ -0.02
SF3B1-211ENST00000487698 ARAP1Q96P48 1450 aa14.92□□□□□ -0.02
SF3B1-211ENST00000487698 VPS8Q8N3P4 1428 aa14.91□□□□□ -0.02
SF3B1-211ENST00000487698 ARHGAP35Q9NRY4 1499 aa14.91□□□□□ -0.02
SF3B1-211ENST00000487698 SNAPC4Q5SXM2 1469 aa14.87□□□□□ -0.03
SF3B1-211ENST00000487698 MAGI1Q96QZ7 1491 aaPredicted RBP14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms