RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 AEBP2Q6ZN18 517 aaPredicted RBP14.88□□□□□ -0.03
SF3B1-202ENST00000409915 CHIC1Q5VXU3 224 aa14.18□□□□□ -0.14
SF3B1-202ENST00000409915 PHF23Q9BUL5 403 aaPredicted RBP12.56□□□□□ -0.4
SF3B1-202ENST00000409915 SENP3Q9H4L4 574 aaPredicted RBP12.54□□□□□ -0.4
SF3B1-202ENST00000409915 FOXD1Q16676 465 aa11.72□□□□□ -0.53
SF3B1-202ENST00000409915 PLPPR3Q6T4P5 718 aa11.35□□□□□ -0.59
SF3B1-202ENST00000409915 PPP6R1Q9UPN7 881 aa11.18□□□□□ -0.62
SF3B1-202ENST00000409915 ADRA2BP18089 450 aa11.12□□□□□ -0.63
SF3B1-202ENST00000409915 PIAS4Q8N2W9 510 aaPredicted RBP10.98□□□□□ -0.65
SF3B1-202ENST00000409915 MSH5O43196 834 aa10.92□□□□□ -0.66
SF3B1-202ENST00000409915 POTEDQ86YR6 584 aa10.58□□□□□ -0.72
SF3B1-202ENST00000409915 NISCHQ9Y2I1 1504 aa10.36□□□□□ -0.75
SF3B1-202ENST00000409915 MAPK8IP2Q13387 824 aaPredicted RBP10.19□□□□□ -0.78
SF3B1-202ENST00000409915 SCAF1Q9H7N4 1312 aaKnown RBP10.05□□□□□ -0.8
SF3B1-202ENST00000409915 PPP4R3CPQ6ZMV5 832 aa10.03□□□□□ -0.8
SF3B1-202ENST00000409915 DMRT2Q9Y5R5 561 aa9.97□□□□□ -0.81
SF3B1-202ENST00000409915 CNKSR2Q8WXI2 1034 aa9.74□□□□□ -0.85
SF3B1-202ENST00000409915 DCAF8L1A6NGE4 600 aa9.7□□□□□ -0.86
SF3B1-202ENST00000409915 EHMT2Q96KQ7 1210 aa9.7□□□□□ -0.86
SF3B1-202ENST00000409915 HOXD11P31277 338 aaPredicted RBP9.67□□□□□ -0.86
SF3B1-202ENST00000409915 SLC24A1O60721 1099 aa9.66□□□□□ -0.86
SF3B1-202ENST00000409915 KCNA4P22459 653 aa9.64□□□□□ -0.87
SF3B1-202ENST00000409915 NPM3O75607 178 aaKnown RBP9.61□□□□□ -0.87
SF3B1-202ENST00000409915 RNF216Q9NWF9 866 aaPredicted RBP9.61□□□□□ -0.87
SF3B1-202ENST00000409915 NCBP3Q53F19 620 aaKnown RBP9.57□□□□□ -0.88
SF3B1-202ENST00000409915 CACNB1Q02641 598 aaPredicted RBP9.42□□□□□ -0.9
SF3B1-202ENST00000409915 RNF39Q9H2S5 420 aa9.29□□□□□ -0.92
SF3B1-202ENST00000409915 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.24□□□□□ -0.934e-13■■□□□ 14.1
SF3B1-202ENST00000409915 DNAJC5BQ9UF47 199 aa9.22□□□□□ -0.93
SF3B1-202ENST00000409915 C1QBPQ07021 282 aaKnown RBP9.18□□□□□ -0.94
SF3B1-202ENST00000409915 CCDC180Q9P1Z9 1646 aa9.17□□□□□ -0.94
SF3B1-202ENST00000409915 SLC4A2P04920 1241 aa9.17□□□□□ -0.94
SF3B1-202ENST00000409915 CSRNP3Q8WYN3 585 aa9.13□□□□□ -0.95
SF3B1-202ENST00000409915 U3KPZ7 1027 aaPredicted RBP9.11□□□□□ -0.95
SF3B1-202ENST00000409915 SLC4A1APQ9BWU0 796 aaKnown RBP9.04□□□□□ -0.96
SF3B1-202ENST00000409915 RTN4Q9NQC3 1192 aaKnown RBP9.03□□□□□ -0.96
SF3B1-202ENST00000409915 ABCC9O60706 1549 aa9.02□□□□□ -0.97
SF3B1-202ENST00000409915 AMER1Q5JTC6 1135 aaPredicted RBP8.99□□□□□ -0.97
SF3B1-202ENST00000409915 SPINK5Q9NQ38 1064 aaPredicted RBP8.95□□□□□ -0.98
SF3B1-202ENST00000409915 ZBTB22O15209 634 aa8.93□□□□□ -0.98
SF3B1-202ENST00000409915 CAPN15O75808 1086 aa8.9□□□□□ -0.98
SF3B1-202ENST00000409915 FOXD4L1Q9NU39 408 aa8.83□□□□□ -1
SF3B1-202ENST00000409915 MYCNP04198 464 aaPredicted RBP8.79□□□□□ -1
SF3B1-202ENST00000409915 TRHP20396 242 aaPredicted RBP8.78□□□□□ -1
SF3B1-202ENST00000409915 DSG3P32926 999 aa8.77□□□□□ -1.01
SF3B1-202ENST00000409915 APLP2Q06481 763 aa8.76□□□□□ -1.01
SF3B1-202ENST00000409915 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.75□□□□□ -1.01
SF3B1-202ENST00000409915 HNRNPUL2Q1KMD3 747 aaKnown RBP8.75□□□□□ -1.01
SF3B1-202ENST00000409915 ATF5Q9Y2D1 282 aaPredicted RBP8.75□□□□□ -1.01
SF3B1-202ENST00000409915 ABCB7O75027 752 aa8.73□□□□□ -1.01
SF3B1-202ENST00000409915 SAMD1Q6SPF0 538 aaPredicted RBP8.71□□□□□ -1.02
SF3B1-202ENST00000409915 DCAF8L2P0C7V8 631 aa8.68□□□□□ -1.02
SF3B1-202ENST00000409915 ZNF219Q9P2Y4 722 aaPredicted RBP8.68□□□□□ -1.02
SF3B1-202ENST00000409915 ZCCHC6Q5VYS8 1495 aaKnown RBP8.65□□□□□ -1.02
SF3B1-202ENST00000409915 RB1CC1Q8TDY2 1594 aa8.63□□□□□ -1.03
SF3B1-202ENST00000409915 NACADO15069 1562 aa8.61□□□□□ -1.03
SF3B1-202ENST00000409915 POLA2Q14181 598 aa8.56□□□□□ -1.04
SF3B1-202ENST00000409915 MYO15BQ96JP2 1530 aa8.54□□□□□ -1.04
SF3B1-202ENST00000409915 DCAF1Q9Y4B6 1507 aa8.53□□□□□ -1.04
SF3B1-202ENST00000409915 SCRIBQ14160 1630 aa8.45□□□□□ -1.06
SF3B1-202ENST00000409915 ATXN8OSP0DMR3 200 aa8.45□□□□□ -1.06
SF3B1-202ENST00000409915 UNC13AQ9UPW8 1703 aa8.45□□□□□ -1.06
SF3B1-202ENST00000409915 PABPN1Q86U42 306 aaKnown RBP eCLIP8.43□□□□□ -1.06
SF3B1-202ENST00000409915 PRKCSHP14314 528 aaPredicted RBP8.4□□□□□ -1.06
SF3B1-202ENST00000409915 DAXXQ9UER7 740 aaPredicted RBP8.4□□□□□ -1.06
SF3B1-202ENST00000409915 BICRAQ9NZM4 1560 aa8.39□□□□□ -1.07
SF3B1-202ENST00000409915 RBM42Q9BTD8 480 aaKnown RBP8.36□□□□□ -1.07
SF3B1-202ENST00000409915 OSCARQ8IYS5 282 aa8.34□□□□□ -1.07
SF3B1-202ENST00000409915 POTEHQ6S545 545 aa8.33□□□□□ -1.08
SF3B1-202ENST00000409915 MKRN4PQ13434 485 aaPredicted RBP8.32□□□□□ -1.08
SF3B1-202ENST00000409915 ZBTB12Q9Y330 459 aaPredicted RBP8.3□□□□□ -1.08
SF3B1-202ENST00000409915 SHROOM4Q9ULL8 1493 aa8.29□□□□□ -1.08
SF3B1-202ENST00000409915 BCANQ96GW7 911 aa8.28□□□□□ -1.08
SF3B1-202ENST00000409915 TAOK2Q9UL54 1235 aa8.26□□□□□ -1.09
SF3B1-202ENST00000409915 PLCB2Q00722 1185 aa8.23□□□□□ -1.09
SF3B1-202ENST00000409915 FKBP8Q14318 412 aa8.22□□□□□ -1.09
SF3B1-202ENST00000409915 HAP1P54257 671 aaPredicted RBP8.17□□□□□ -1.1
SF3B1-202ENST00000409915 FBLN2P98095 1184 aa8.17□□□□□ -1.1
SF3B1-202ENST00000409915 CHRDL2Q6WN34 429 aa8.17□□□□□ -1.1
SF3B1-202ENST00000409915 EIF4G1Q04637 1599 aaKnown RBP8.17□□□□□ -1.1
SF3B1-202ENST00000409915 AKT1S1Q96B36 256 aa8.16□□□□□ -1.1
SF3B1-202ENST00000409915 ARXQ96QS3 562 aa8.16□□□□□ -1.1
SF3B1-202ENST00000409915 TPRNQ4KMQ1 711 aa8.14□□□□□ -1.11
SF3B1-202ENST00000409915 TIMELESSQ9UNS1 1208 aa8.13□□□□□ -1.11
SF3B1-202ENST00000409915 CC2D2AQ9P2K1 1620 aa8.13□□□□□ -1.11
SF3B1-202ENST00000409915 REM2Q8IYK8 340 aaPredicted RBP8.12□□□□□ -1.11
SF3B1-202ENST00000409915 CECR2Q9BXF3 1484 aa8.11□□□□□ -1.11
SF3B1-202ENST00000409915 SPDYE2BA6NHP3 402 aa8.08□□□□□ -1.12
SF3B1-202ENST00000409915 SPDYE6P0CI01 402 aa8.08□□□□□ -1.12
SF3B1-202ENST00000409915 SPDYE2Q495Y8 402 aa8.08□□□□□ -1.12
SF3B1-202ENST00000409915 PITPNM1O00562 1244 aa8.06□□□□□ -1.12
SF3B1-202ENST00000409915 SSUH2Q9Y2M2 353 aa8.06□□□□□ -1.12
SF3B1-202ENST00000409915 SMARCA4P51532 1647 aa8.05□□□□□ -1.12
SF3B1-202ENST00000409915 TULP1O00294 542 aaPredicted RBP8.05□□□□□ -1.12
SF3B1-202ENST00000409915 ZNF692Q9BU19 519 aaPredicted RBP8.05□□□□□ -1.12
SF3B1-202ENST00000409915 BAZ1AQ9NRL2 1556 aaPredicted RBP8.02□□□□□ -1.13
SF3B1-202ENST00000409915 MROH2BQ7Z745 1585 aa8.01□□□□□ -1.13
SF3B1-202ENST00000409915 VSIG10Q8N0Z9 540 aa8.01□□□□□ -1.13
SF3B1-202ENST00000409915 CLEC11AQ9Y240 323 aa7.99□□□□□ -1.13
SF3B1-202ENST00000409915 ATAD2BQ9ULI0 1458 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms