RNA–Protein interactions for RNA: ENST00000516672.1

SCARNA13-201, small Cajal body-specific RNA 13, humanhuman

BASIC

Gene SCARNA13, Length 275 nt, Biotype scaRNA, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARNA13-201ENST00000516672 DNAJC5Q9H3Z4 198 aa11.02□□□□□ -0.65
SCARNA13-201ENST00000516672 DNAJC5BQ9UF47 199 aa10.91□□□□□ -0.66
SCARNA13-201ENST00000516672 ABCC9O60706 1549 aa10.27□□□□□ -0.77
SCARNA13-201ENST00000516672 TRIM41Q8WV44 630 aa10□□□□□ -0.81
SCARNA13-201ENST00000516672 AEBP2Q6ZN18 517 aaPredicted RBP9.82□□□□□ -0.84
SCARNA13-201ENST00000516672 ILDR1Q86SU0 546 aaPredicted RBP9.76□□□□□ -0.85
SCARNA13-201ENST00000516672 NISCHQ9Y2I1 1504 aa9.46□□□□□ -0.9
SCARNA13-201ENST00000516672 CUX2O14529 1486 aa9.39□□□□□ -0.91
SCARNA13-201ENST00000516672 CECR2Q9BXF3 1484 aa9.38□□□□□ -0.91
SCARNA13-201ENST00000516672 PABPN1Q86U42 306 aaKnown RBP eCLIP9.34□□□□□ -0.91
SCARNA13-201ENST00000516672 CC2D2AQ9P2K1 1620 aa9.17□□□□□ -0.94
SCARNA13-201ENST00000516672 SOCS7O14512 581 aa9.14□□□□□ -0.95
SCARNA13-201ENST00000516672 LMTK3Q96Q04 1460 aa9.1□□□□□ -0.95
SCARNA13-201ENST00000516672 RB1CC1Q8TDY2 1594 aa9.09□□□□□ -0.95
SCARNA13-201ENST00000516672 TRHP20396 242 aaPredicted RBP9.03□□□□□ -0.96
SCARNA13-201ENST00000516672 ILDR2Q71H61 639 aa8.98□□□□□ -0.97
SCARNA13-201ENST00000516672 ERCC6Q03468 1493 aa8.95□□□□□ -0.98
SCARNA13-201ENST00000516672 BICRAQ9NZM4 1560 aa8.9□□□□□ -0.98
SCARNA13-201ENST00000516672 UNC13AQ9UPW8 1703 aa8.88□□□□□ -0.99
SCARNA13-201ENST00000516672 FBXO41Q8TF61 875 aa8.86□□□□□ -0.99
SCARNA13-201ENST00000516672 CCDC180Q9P1Z9 1646 aa8.8□□□□□ -1
SCARNA13-201ENST00000516672 EIF4G1Q04637 1599 aaKnown RBP8.8□□□□□ -1
SCARNA13-201ENST00000516672 RIMBP3CA6NJZ7 1639 aa8.8□□□□□ -1
SCARNA13-201ENST00000516672 RIMBP3BA6NNM3 1639 aa8.8□□□□□ -1
SCARNA13-201ENST00000516672 RIMBP3Q9UFD9 1639 aa8.8□□□□□ -1
SCARNA13-201ENST00000516672 DISP3Q9P2K9 1392 aa8.74□□□□□ -1.01
SCARNA13-201ENST00000516672 OSCARQ8IYS5 282 aa8.73□□□□□ -1.01
SCARNA13-201ENST00000516672 NACADO15069 1562 aa8.67□□□□□ -1.02
SCARNA13-201ENST00000516672 ERCC6L2Q5T890 1561 aa8.67□□□□□ -1.02
SCARNA13-201ENST00000516672 CYB5RLQ6IPT4 315 aa8.66□□□□□ -1.02
SCARNA13-201ENST00000516672 BAZ1AQ9NRL2 1556 aaPredicted RBP8.64□□□□□ -1.03
SCARNA13-201ENST00000516672 ARHGEF11O15085 1522 aa8.61□□□□□ -1.03
SCARNA13-201ENST00000516672 THOC2Q8NI27 1593 aaKnown RBP8.59□□□□□ -1.03
SCARNA13-201ENST00000516672 SHROOM4Q9ULL8 1493 aa8.57□□□□□ -1.04
SCARNA13-201ENST00000516672 KDM4FA0A1W2PPD8 638 aa8.57□□□□□ -1.04
SCARNA13-201ENST00000516672 HECW2Q9P2P5 1572 aa8.5□□□□□ -1.05
SCARNA13-201ENST00000516672 SPATA31D1Q6ZQQ2 1576 aa8.46□□□□□ -1.06
SCARNA13-201ENST00000516672 ARAP1Q96P48 1450 aa8.44□□□□□ -1.06
SCARNA13-201ENST00000516672 NESP48681 1621 aa8.41□□□□□ -1.06
SCARNA13-201ENST00000516672 DCAF8L2P0C7V8 631 aa8.41□□□□□ -1.06
SCARNA13-201ENST00000516672 SMARCA2P51531 1590 aa8.39□□□□□ -1.07
SCARNA13-201ENST00000516672 SYNJ2O15056 1496 aa8.38□□□□□ -1.07
SCARNA13-201ENST00000516672 KIF21AQ7Z4S6 1674 aa8.23□□□□□ -1.09
SCARNA13-201ENST00000516672 ADGRL1O94910 1474 aa8.16□□□□□ -1.1
SCARNA13-201ENST00000516672 WDR62O43379 1518 aa8.13□□□□□ -1.11
SCARNA13-201ENST00000516672 IFFO2Q5TF58 517 aa8.12□□□□□ -1.11
SCARNA13-201ENST00000516672 MRC2Q9UBG0 1479 aa8.12□□□□□ -1.11
SCARNA13-201ENST00000516672 RSF1Q96T23 1441 aaPredicted RBP8.11□□□□□ -1.11
SCARNA13-201ENST00000516672 SCRIBQ14160 1630 aa8.11□□□□□ -1.11
SCARNA13-201ENST00000516672 CERKQ8TCT0 537 aa8.09□□□□□ -1.11
SCARNA13-201ENST00000516672 PDS5BQ9NTI5 1447 aa8.08□□□□□ -1.12
SCARNA13-201ENST00000516672 LAMC3Q9Y6N6 1575 aa8.07□□□□□ -1.12
SCARNA13-201ENST00000516672 MYO15BQ96JP2 1530 aa8.05□□□□□ -1.12
SCARNA13-201ENST00000516672 NCAPD3P42695 1498 aa8.04□□□□□ -1.12
SCARNA13-201ENST00000516672 KDM6BO15054 1643 aa8.01□□□□□ -1.13
SCARNA13-201ENST00000516672 KIF13AQ9H1H9 1805 aa8□□□□□ -1.13
SCARNA13-201ENST00000516672 CHD1O14646 1710 aa7.91□□□□□ -1.14
SCARNA13-201ENST00000516672 ZNF608Q9ULD9 1512 aaPredicted RBP7.85□□□□□ -1.15
SCARNA13-201ENST00000516672 FBLN2P98095 1184 aa7.85□□□□□ -1.15
SCARNA13-201ENST00000516672 GAPVD1Q14C86 1478 aa7.85□□□□□ -1.15
SCARNA13-201ENST00000516672 FAM69CQ0P6D2 419 aa7.84□□□□□ -1.15
SCARNA13-201ENST00000516672 HMGXB3Q12766 1538 aa7.83□□□□□ -1.16
SCARNA13-201ENST00000516672 ATAD2BQ9ULI0 1458 aa7.82□□□□□ -1.16
SCARNA13-201ENST00000516672 MED1Q15648 1581 aaPredicted RBP7.81□□□□□ -1.16
SCARNA13-201ENST00000516672 CEP164Q9UPV0 1460 aa7.8□□□□□ -1.16
SCARNA13-201ENST00000516672 CLASP1Q7Z460 1538 aa7.79□□□□□ -1.16
SCARNA13-201ENST00000516672 TOP2BQ02880 1626 aa7.78□□□□□ -1.16
SCARNA13-201ENST00000516672 PHF23Q9BUL5 403 aaPredicted RBP7.76□□□□□ -1.17
SCARNA13-201ENST00000516672 SMARCA4P51532 1647 aa7.76□□□□□ -1.17
SCARNA13-201ENST00000516672 ABCC10Q5T3U5 1492 aa7.75□□□□□ -1.17
SCARNA13-201ENST00000516672 PCF11O94913 1555 aaKnown RBP7.75□□□□□ -1.17
SCARNA13-201ENST00000516672 CADPSQ9ULU8 1353 aa7.73□□□□□ -1.17
SCARNA13-201ENST00000516672 SNAPC4Q5SXM2 1469 aa7.73□□□□□ -1.17
SCARNA13-201ENST00000516672 EIF4G3O43432 1585 aaKnown RBP7.71□□□□□ -1.17
SCARNA13-201ENST00000516672 SRCAPQ6ZRS2 3230 aa7.71□□□□□ -1.18
SCARNA13-201ENST00000516672 TSPOAP1O95153 1857 aa7.7□□□□□ -1.18
SCARNA13-201ENST00000516672 URB2Q14146 1524 aaKnown RBP7.7□□□□□ -1.18
SCARNA13-201ENST00000516672 DIP2BQ9P265 1576 aa7.7□□□□□ -1.18
SCARNA13-201ENST00000516672 IFT140Q96RY7 1462 aa7.68□□□□□ -1.18
SCARNA13-201ENST00000516672 HSPA2P54652 639 aa7.68□□□□□ -1.18
SCARNA13-201ENST00000516672 BAZ1BQ9UIG0 1483 aaKnown RBP7.67□□□□□ -1.18
SCARNA13-201ENST00000516672 FANCD2Q9BXW9 1451 aa7.66□□□□□ -1.18
SCARNA13-201ENST00000516672 SYNJ1O43426 1573 aa7.64□□□□□ -1.19
SCARNA13-201ENST00000516672 SLC34A2O95436 690 aa7.64□□□□□ -1.19
SCARNA13-201ENST00000516672 PTPRMP28827 1452 aa7.62□□□□□ -1.19
SCARNA13-201ENST00000516672 LTBP4Q8N2S1 1624 aa7.6□□□□□ -1.19
SCARNA13-201ENST00000516672 AQRO60306 1485 aaKnown RBP eCLIP7.6□□□□□ -1.19
SCARNA13-201ENST00000516672 PCDH10Q9P2E7 1040 aa7.58□□□□□ -1.2
SCARNA13-201ENST00000516672 COL17A1Q9UMD9 1497 aaPredicted RBP7.57□□□□□ -1.2
SCARNA13-201ENST00000516672 MAPKBP1O60336 1514 aa7.56□□□□□ -1.2
SCARNA13-201ENST00000516672 IQSEC2Q5JU85 1478 aa7.55□□□□□ -1.2
SCARNA13-201ENST00000516672 HSPA1LP34931 641 aa7.54□□□□□ -1.2
SCARNA13-201ENST00000516672 UBAP1LF5GYI3 381 aa7.53□□□□□ -1.2
SCARNA13-201ENST00000516672 CHMP7Q8WUX9 453 aaPredicted RBP7.53□□□□□ -1.2
SCARNA13-201ENST00000516672 RGS17Q9UGC6 210 aaPredicted RBP7.53□□□□□ -1.2
SCARNA13-201ENST00000516672 SETD1AO15047 1707 aaKnown RBP7.51□□□□□ -1.21
SCARNA13-201ENST00000516672 NPM1P06748 294 aaKnown RBP eCLIP7.5□□□□□ -1.21
SCARNA13-201ENST00000516672 PTPRTO14522 1441 aa7.5□□□□□ -1.21
SCARNA13-201ENST00000516672 PPRC1Q5VV67 1664 aaKnown RBP7.49□□□□□ -1.21
SCARNA13-201ENST00000516672 UPF1Q92900 1129 aaKnown RBP eCLIP7.49□□□□□ -1.214e-34■□□□□ 9.8
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms