RNA–Protein interactions for RNA: ENST00000493886.5

VCP-207, Transcript of valosin containing protein, humanhuman

TSL 2

Gene VCP, Length 2,942 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-207ENST00000493886 NISCHQ9Y2I1 1504 aa29.82■■■□□ 2.36
VCP-207ENST00000493886 CCDC180Q9P1Z9 1646 aa25.68■■□□□ 1.7
VCP-207ENST00000493886 ZCCHC6Q5VYS8 1495 aaKnown RBP25.14■■□□□ 1.62
VCP-207ENST00000493886 SHROOM4Q9ULL8 1493 aa24.84■■□□□ 1.57
VCP-207ENST00000493886 DCAF8L2P0C7V8 631 aa24.63■■□□□ 1.53
VCP-207ENST00000493886 DCAF1Q9Y4B6 1507 aa24.58■■□□□ 1.53
VCP-207ENST00000493886 SUPT5HO00267 1087 aaKnown RBP24.14■■□□□ 1.46
VCP-207ENST00000493886 MYO15BQ96JP2 1530 aa24.08■■□□□ 1.45
VCP-207ENST00000493886 ABCC9O60706 1549 aa24■■□□□ 1.43
VCP-207ENST00000493886 NACADO15069 1562 aa23.83■■□□□ 1.41
VCP-207ENST00000493886 SCRIBQ14160 1630 aa23.82■■□□□ 1.4
VCP-207ENST00000493886 RB1CC1Q8TDY2 1594 aa23.52■■□□□ 1.36
VCP-207ENST00000493886 RSF1Q96T23 1441 aaPredicted RBP23.36■■□□□ 1.33
VCP-207ENST00000493886 CHIC1Q5VXU3 224 aa23.33■■□□□ 1.33
VCP-207ENST00000493886 CECR2Q9BXF3 1484 aa23.2■■□□□ 1.3
VCP-207ENST00000493886 UNC13AQ9UPW8 1703 aa23.11■■□□□ 1.29
VCP-207ENST00000493886 MROH2BQ7Z745 1585 aa23.1■■□□□ 1.29
VCP-207ENST00000493886 BAZ1AQ9NRL2 1556 aaPredicted RBP22.96■■□□□ 1.27
VCP-207ENST00000493886 WIZO95785 1651 aa22.94■■□□□ 1.26
VCP-207ENST00000493886 BICRAQ9NZM4 1560 aa22.85■■□□□ 1.25
VCP-207ENST00000493886 SMARCA4P51532 1647 aa22.82■■□□□ 1.24
VCP-207ENST00000493886 PABPN1Q86U42 306 aaKnown RBP eCLIP22.78■■□□□ 1.241e-12■■□□□ 14.2
VCP-207ENST00000493886 TOP2AP11388 1531 aaKnown RBP22.66■■□□□ 1.22
VCP-207ENST00000493886 TRIM41Q8WV44 630 aa22.61■■□□□ 1.21
VCP-207ENST00000493886 LOC105371045A0A1W2PR82 267 aa22.52■■□□□ 1.2
VCP-207ENST00000493886 SMARCA2P51531 1590 aa22.49■■□□□ 1.19
VCP-207ENST00000493886 EIF4G1Q04637 1599 aaKnown RBP22.49■■□□□ 1.19
VCP-207ENST00000493886 CCDC88BA6NC98 1476 aa22.49■■□□□ 1.19
VCP-207ENST00000493886 PEG3Q9GZU2 1588 aa22.46■■□□□ 1.19
VCP-207ENST00000493886 ATAD2BQ9ULI0 1458 aa22.33■■□□□ 1.17
VCP-207ENST00000493886 PCGF6Q9BYE7 350 aa22.31■■□□□ 1.16
VCP-207ENST00000493886 FAM9AQ8IZU1 332 aaPredicted RBP22.29■■□□□ 1.16
VCP-207ENST00000493886 BAZ1BQ9UIG0 1483 aaKnown RBP22.23■■□□□ 1.15
VCP-207ENST00000493886 HRCP23327 699 aa22.23■■□□□ 1.15
VCP-207ENST00000493886 ABCC8Q09428 1581 aa22.22■■□□□ 1.15
VCP-207ENST00000493886 PELP1Q8IZL8 1130 aaKnown RBP22.09■■□□□ 1.13
VCP-207ENST00000493886 EHMT2Q96KQ7 1210 aa22.02■■□□□ 1.12
VCP-207ENST00000493886 NCAPD3P42695 1498 aa22.02■■□□□ 1.12
VCP-207ENST00000493886 HMGXB3Q12766 1538 aa22.01■■□□□ 1.11
VCP-207ENST00000493886 PPARGC1BQ86YN6 1023 aaKnown RBP21.99■■□□□ 1.11
VCP-207ENST00000493886 WRNQ14191 1432 aaPredicted RBP eCLIP21.97■■□□□ 1.11
VCP-207ENST00000493886 SOGA1O94964 1423 aa21.91■■□□□ 1.1
VCP-207ENST00000493886 SYNJ1O43426 1573 aa21.87■■□□□ 1.09
VCP-207ENST00000493886 EEA1Q15075 1411 aa21.86■■□□□ 1.09
VCP-207ENST00000493886 TRIM26Q12899 539 aaPredicted RBP21.82■■□□□ 1.08
VCP-207ENST00000493886 RUSC2Q8N2Y8 1516 aa21.81■■□□□ 1.08
VCP-207ENST00000493886 CSRNP3Q8WYN3 585 aa21.78■■□□□ 1.08
VCP-207ENST00000493886 TOP2BQ02880 1626 aa21.7■■□□□ 1.06
VCP-207ENST00000493886 CFTRP13569 1480 aa21.69■■□□□ 1.06
VCP-207ENST00000493886 CC2D2AQ9P2K1 1620 aa21.68■■□□□ 1.06
VCP-207ENST00000493886 TNIKQ9UKE5 1360 aa21.66■■□□□ 1.06
VCP-207ENST00000493886 MYT1Q01538 1121 aa21.65■■□□□ 1.06
VCP-207ENST00000493886 BIVM-ERCC5R4GMW8 1640 aa21.65■■□□□ 1.06
VCP-207ENST00000493886 GOLGA3Q08378 1498 aa21.63■■□□□ 1.05
VCP-207ENST00000493886 CEP162Q5TB80 1403 aa21.61■■□□□ 1.05
VCP-207ENST00000493886 UBTFP17480 764 aaKnown RBP21.59■■□□□ 1.05
VCP-207ENST00000493886 CEP164Q9UPV0 1460 aa21.57■■□□□ 1.04
VCP-207ENST00000493886 KIF21BO75037 1637 aa21.57■■□□□ 1.04
VCP-207ENST00000493886 CUX1P39880 1505 aa21.56■■□□□ 1.04
VCP-207ENST00000493886 PRDM2Q13029 1718 aa21.55■■□□□ 1.04
VCP-207ENST00000493886 CADPSQ9ULU8 1353 aa21.53■■□□□ 1.04
VCP-207ENST00000493886 RAPGEF2Q9Y4G8 1499 aa21.42■■□□□ 1.02
VCP-207ENST00000493886 KIF27Q86VH2 1401 aa21.36■■□□□ 1.01
VCP-207ENST00000493886 PRXQ9BXM0 1461 aa21.33■■□□□ 1.01
VCP-207ENST00000493886 CLIP1P30622 1438 aa21.33■■□□□ 1.01
VCP-207ENST00000493886 ERICH3Q5RHP9 1530 aa21.32■■□□□ 1
VCP-207ENST00000493886 FANCD2Q9BXW9 1451 aa21.3■■□□□ 1
VCP-207ENST00000493886 FGD5Q6ZNL6 1462 aa21.24■□□□□ 0.99
VCP-207ENST00000493886 NESP48681 1621 aa21.24■□□□□ 0.99
VCP-207ENST00000493886 CUX2O14529 1486 aa21.22■□□□□ 0.99
VCP-207ENST00000493886 TTBK1Q5TCY1 1321 aaPredicted RBP21.21■□□□□ 0.99
VCP-207ENST00000493886 VPS8Q8N3P4 1428 aa21.2■□□□□ 0.98
VCP-207ENST00000493886 LAMC3Q9Y6N6 1575 aa21.17■□□□□ 0.98
VCP-207ENST00000493886 ZEB1P37275 1124 aaPredicted RBP21.17■□□□□ 0.98
VCP-207ENST00000493886 RANGAP1P46060 587 aaPredicted RBP21.17■□□□□ 0.98
VCP-207ENST00000493886 DNMBPQ6XZF7 1577 aa21.17■□□□□ 0.98
VCP-207ENST00000493886 IGF1RP08069 1367 aa21.14■□□□□ 0.97
VCP-207ENST00000493886 TOPBP1Q92547 1522 aa21.12■□□□□ 0.97
VCP-207ENST00000493886 DNAJC5BQ9UF47 199 aa21.11■□□□□ 0.97
VCP-207ENST00000493886 POLA1P09884 1462 aaPredicted RBP21.07■□□□□ 0.96
VCP-207ENST00000493886 ARAP1Q96P48 1450 aa21.05■□□□□ 0.96
VCP-207ENST00000493886 CARMIL1Q5VZK9 1371 aa21.05■□□□□ 0.96
VCP-207ENST00000493886 RAD54L2Q9Y4B4 1467 aa21.04■□□□□ 0.96
VCP-207ENST00000493886 APLP2Q06481 763 aa21.04■□□□□ 0.96
VCP-207ENST00000493886 ABCA10Q8WWZ4 1543 aa21.04■□□□□ 0.96
VCP-207ENST00000493886 PDS5BQ9NTI5 1447 aa21.03■□□□□ 0.96
VCP-207ENST00000493886 URB2Q14146 1524 aaKnown RBP21.01■□□□□ 0.95
VCP-207ENST00000493886 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.98■□□□□ 0.95
VCP-207ENST00000493886 ARHGAP35Q9NRY4 1499 aa20.96■□□□□ 0.95
VCP-207ENST00000493886 KIF21AQ7Z4S6 1674 aa20.93■□□□□ 0.94
VCP-207ENST00000493886 PRKCSHP14314 528 aaPredicted RBP20.93■□□□□ 0.94
VCP-207ENST00000493886 CCER1Q8TC90 406 aaPredicted RBP20.91■□□□□ 0.94
VCP-207ENST00000493886 WDR97A6NE52 1622 aa20.9■□□□□ 0.94
VCP-207ENST00000493886 CUL7Q14999 1698 aa20.86■□□□□ 0.93
VCP-207ENST00000493886 ABCA5Q8WWZ7 1642 aa20.81■□□□□ 0.92
VCP-207ENST00000493886 TDRD9Q8NDG6 1382 aaKnown RBP20.8■□□□□ 0.92
VCP-207ENST00000493886 KANK4Q5T7N3 995 aaPredicted RBP20.8■□□□□ 0.92
VCP-207ENST00000493886 GAPVD1Q14C86 1478 aa20.78■□□□□ 0.92
VCP-207ENST00000493886 HNRNPUL2Q1KMD3 747 aaKnown RBP20.77■□□□□ 0.92
VCP-207ENST00000493886 TARBP1Q13395 1621 aaKnown RBP20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms