RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 NISCHQ9Y2I1 1504 aa33.39■■■□□ 2.94
SF3B1-204ENST00000414963 CCDC180Q9P1Z9 1646 aa29.34■■■□□ 2.29
SF3B1-204ENST00000414963 ABCC9O60706 1549 aa28.07■■■□□ 2.08
SF3B1-204ENST00000414963 ZCCHC6Q5VYS8 1495 aaKnown RBP27.95■■■□□ 2.06
SF3B1-204ENST00000414963 DCAF1Q9Y4B6 1507 aa27.7■■■□□ 2.02
SF3B1-204ENST00000414963 MYO15BQ96JP2 1530 aa27.59■■■□□ 2.01
SF3B1-204ENST00000414963 DCAF8L2P0C7V8 631 aa27.57■■■□□ 2
SF3B1-204ENST00000414963 NACADO15069 1562 aa27.48■■□□□ 1.99
SF3B1-204ENST00000414963 RB1CC1Q8TDY2 1594 aa27.31■■□□□ 1.96
SF3B1-204ENST00000414963 SCRIBQ14160 1630 aa26.79■■□□□ 1.88
SF3B1-204ENST00000414963 SHROOM4Q9ULL8 1493 aa26.7■■□□□ 1.87
SF3B1-204ENST00000414963 UNC13AQ9UPW8 1703 aa26.62■■□□□ 1.85
SF3B1-204ENST00000414963 BICRAQ9NZM4 1560 aa26.48■■□□□ 1.83
SF3B1-204ENST00000414963 PABPN1Q86U42 306 aaKnown RBP eCLIP26.37■■□□□ 1.81
SF3B1-204ENST00000414963 CECR2Q9BXF3 1484 aa25.92■■□□□ 1.74
SF3B1-204ENST00000414963 BAZ1AQ9NRL2 1556 aaPredicted RBP25.81■■□□□ 1.72
SF3B1-204ENST00000414963 SMARCA4P51532 1647 aa25.73■■□□□ 1.71
SF3B1-204ENST00000414963 MROH2BQ7Z745 1585 aa25.73■■□□□ 1.71
SF3B1-204ENST00000414963 RSF1Q96T23 1441 aaPredicted RBP25.71■■□□□ 1.71
SF3B1-204ENST00000414963 EIF4G1Q04637 1599 aaKnown RBP25.7■■□□□ 1.71
SF3B1-204ENST00000414963 PEG3Q9GZU2 1588 aa25.52■■□□□ 1.68
SF3B1-204ENST00000414963 SUPT5HO00267 1087 aaKnown RBP25.5■■□□□ 1.67
SF3B1-204ENST00000414963 ATAD2BQ9ULI0 1458 aa25.47■■□□□ 1.67
SF3B1-204ENST00000414963 SMARCA2P51531 1590 aa25.45■■□□□ 1.66
SF3B1-204ENST00000414963 WIZO95785 1651 aa25.44■■□□□ 1.66
SF3B1-204ENST00000414963 CC2D2AQ9P2K1 1620 aa25.41■■□□□ 1.66
SF3B1-204ENST00000414963 NCAPD3P42695 1498 aa25.39■■□□□ 1.65
SF3B1-204ENST00000414963 HMGXB3Q12766 1538 aa25.27■■□□□ 1.64
SF3B1-204ENST00000414963 BAZ1BQ9UIG0 1483 aaKnown RBP25.26■■□□□ 1.63
SF3B1-204ENST00000414963 TOP2AP11388 1531 aaKnown RBP25.25■■□□□ 1.63
SF3B1-204ENST00000414963 DNAJC5BQ9UF47 199 aa25.23■■□□□ 1.63
SF3B1-204ENST00000414963 CCDC88BA6NC98 1476 aa24.97■■□□□ 1.59
SF3B1-204ENST00000414963 CADPSQ9ULU8 1353 aa24.67■■□□□ 1.54
SF3B1-204ENST00000414963 CFTRP13569 1480 aa24.66■■□□□ 1.54
SF3B1-204ENST00000414963 LAMC3Q9Y6N6 1575 aa24.54■■□□□ 1.52
SF3B1-204ENST00000414963 NESP48681 1621 aa24.49■■□□□ 1.51
SF3B1-204ENST00000414963 PRDM2Q13029 1718 aa24.39■■□□□ 1.5
SF3B1-204ENST00000414963 PDS5BQ9NTI5 1447 aa24.39■■□□□ 1.5
SF3B1-204ENST00000414963 FANCD2Q9BXW9 1451 aa24.34■■□□□ 1.49
SF3B1-204ENST00000414963 CHIC1Q5VXU3 224 aa24.25■■□□□ 1.47
SF3B1-204ENST00000414963 CEP164Q9UPV0 1460 aa24.24■■□□□ 1.47
SF3B1-204ENST00000414963 WRNQ14191 1432 aaPredicted RBP eCLIP24.19■■□□□ 1.46
SF3B1-204ENST00000414963 ABCC8Q09428 1581 aa24.19■■□□□ 1.46
SF3B1-204ENST00000414963 KIF21AQ7Z4S6 1674 aa24.16■■□□□ 1.46
SF3B1-204ENST00000414963 ERCC6Q03468 1493 aa24.13■■□□□ 1.45
SF3B1-204ENST00000414963 CUX1P39880 1505 aa24.1■■□□□ 1.45
SF3B1-204ENST00000414963 TRIM41Q8WV44 630 aa24.09■■□□□ 1.45
SF3B1-204ENST00000414963 MRC2Q9UBG0 1479 aa24.07■■□□□ 1.44
SF3B1-204ENST00000414963 URB2Q14146 1524 aaKnown RBP24.06■■□□□ 1.44
SF3B1-204ENST00000414963 SYNJ1O43426 1573 aa24.06■■□□□ 1.44
SF3B1-204ENST00000414963 TOP2BQ02880 1626 aa24.06■■□□□ 1.44
SF3B1-204ENST00000414963 DNMBPQ6XZF7 1577 aa24.04■■□□□ 1.44
SF3B1-204ENST00000414963 BIVM-ERCC5R4GMW8 1640 aa24.03■■□□□ 1.44
SF3B1-204ENST00000414963 TOPBP1Q92547 1522 aa24.03■■□□□ 1.44
SF3B1-204ENST00000414963 WDR62O43379 1518 aa23.97■■□□□ 1.43
SF3B1-204ENST00000414963 THOC2Q8NI27 1593 aaKnown RBP23.96■■□□□ 1.43
SF3B1-204ENST00000414963 FGD5Q6ZNL6 1462 aa23.89■■□□□ 1.42
SF3B1-204ENST00000414963 POLA1P09884 1462 aaPredicted RBP23.87■■□□□ 1.41
SF3B1-204ENST00000414963 SOGA1O94964 1423 aa23.81■■□□□ 1.4
SF3B1-204ENST00000414963 CUX2O14529 1486 aa23.79■■□□□ 1.4
SF3B1-204ENST00000414963 RAD54L2Q9Y4B4 1467 aa23.75■■□□□ 1.39
SF3B1-204ENST00000414963 IFT140Q96RY7 1462 aa23.73■■□□□ 1.39
SF3B1-204ENST00000414963 ABCA10Q8WWZ4 1543 aa23.73■■□□□ 1.39
SF3B1-204ENST00000414963 TARBP1Q13395 1621 aaKnown RBP23.71■■□□□ 1.39
SF3B1-204ENST00000414963 EEA1Q15075 1411 aa23.67■■□□□ 1.38
SF3B1-204ENST00000414963 KIF27Q86VH2 1401 aa23.66■■□□□ 1.38
SF3B1-204ENST00000414963 WDR97A6NE52 1622 aa23.62■■□□□ 1.37
SF3B1-204ENST00000414963 RUSC2Q8N2Y8 1516 aa23.62■■□□□ 1.37
SF3B1-204ENST00000414963 TDRD9Q8NDG6 1382 aaKnown RBP23.58■■□□□ 1.37
SF3B1-204ENST00000414963 ZNF608Q9ULD9 1512 aaPredicted RBP23.54■■□□□ 1.36
SF3B1-204ENST00000414963 CSRNP3Q8WYN3 585 aa23.54■■□□□ 1.36
SF3B1-204ENST00000414963 ABCA5Q8WWZ7 1642 aa23.54■■□□□ 1.36
SF3B1-204ENST00000414963 GAPVD1Q14C86 1478 aa23.53■■□□□ 1.36
SF3B1-204ENST00000414963 FAM9AQ8IZU1 332 aaPredicted RBP23.52■■□□□ 1.36
SF3B1-204ENST00000414963 IGF1RP08069 1367 aa23.52■■□□□ 1.36
SF3B1-204ENST00000414963 AQRO60306 1485 aaKnown RBP eCLIP23.5■■□□□ 1.353e-9■■□□□ 14.5
SF3B1-204ENST00000414963 ERICH3Q5RHP9 1530 aa23.45■■□□□ 1.34
SF3B1-204ENST00000414963 GRIN2BQ13224 1484 aa23.44■■□□□ 1.34
SF3B1-204ENST00000414963 EIF4G3O43432 1585 aaKnown RBP23.44■■□□□ 1.34
SF3B1-204ENST00000414963 PRXQ9BXM0 1461 aa23.39■■□□□ 1.34
SF3B1-204ENST00000414963 CARMIL1Q5VZK9 1371 aa23.36■■□□□ 1.33
SF3B1-204ENST00000414963 PBRM1Q86U86 1689 aa23.35■■□□□ 1.33
SF3B1-204ENST00000414963 CUL7Q14999 1698 aa23.32■■□□□ 1.32
SF3B1-204ENST00000414963 MAGI1Q96QZ7 1491 aaPredicted RBP23.31■■□□□ 1.32
SF3B1-204ENST00000414963 KIF21BO75037 1637 aa23.31■■□□□ 1.32
SF3B1-204ENST00000414963 FHAD1B1AJZ9 1412 aa23.3■■□□□ 1.32
SF3B1-204ENST00000414963 SNAPC4Q5SXM2 1469 aa23.28■■□□□ 1.32
SF3B1-204ENST00000414963 RAPGEF2Q9Y4G8 1499 aa23.28■■□□□ 1.32
SF3B1-204ENST00000414963 ADAMTS12P58397 1594 aa23.25■■□□□ 1.31
SF3B1-204ENST00000414963 GOLGA3Q08378 1498 aa23.24■■□□□ 1.31
SF3B1-204ENST00000414963 LOC105371045A0A1W2PR82 267 aa23.24■■□□□ 1.31
SF3B1-204ENST00000414963 SYNJ2O15056 1496 aa23.21■■□□□ 1.31
SF3B1-204ENST00000414963 CHMP7Q8WUX9 453 aaPredicted RBP23.15■■□□□ 1.3
SF3B1-204ENST00000414963 GRIN2AQ12879 1464 aa23.13■■□□□ 1.29
SF3B1-204ENST00000414963 TNIKQ9UKE5 1360 aa23.13■■□□□ 1.29
SF3B1-204ENST00000414963 UBTFP17480 764 aaKnown RBP23.12■■□□□ 1.29
SF3B1-204ENST00000414963 EHMT2Q96KQ7 1210 aa23.11■■□□□ 1.29
SF3B1-204ENST00000414963 FBLN2P98095 1184 aa23.06■■□□□ 1.28
SF3B1-204ENST00000414963 NUP160Q12769 1436 aa23.03■■□□□ 1.28
SF3B1-204ENST00000414963 KIAA0586Q9BVV6 1533 aa22.98■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms