RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 NISCHQ9Y2I1 1504 aa13.23□□□□□ -0.29
SF3B1-201ENST00000335508 DCAF8L2P0C7V8 631 aa12.37□□□□□ -0.43
SF3B1-201ENST00000335508 SUPT5HO00267 1087 aaKnown RBP11.62□□□□□ -0.55
SF3B1-201ENST00000335508 SHROOM4Q9ULL8 1493 aa11.54□□□□□ -0.56
SF3B1-201ENST00000335508 ABCC9O60706 1549 aa11.18□□□□□ -0.62
SF3B1-201ENST00000335508 CCDC180Q9P1Z9 1646 aa11.03□□□□□ -0.64
SF3B1-201ENST00000335508 ZCCHC6Q5VYS8 1495 aaKnown RBP10.99□□□□□ -0.65
SF3B1-201ENST00000335508 TRIM41Q8WV44 630 aa10.97□□□□□ -0.65
SF3B1-201ENST00000335508 FAM9AQ8IZU1 332 aaPredicted RBP10.93□□□□□ -0.66
SF3B1-201ENST00000335508 APLP2Q06481 763 aa10.88□□□□□ -0.67
SF3B1-201ENST00000335508 PABPN1Q86U42 306 aaKnown RBP eCLIP10.84□□□□□ -0.672e-6■□□□□ 10.4
SF3B1-201ENST00000335508 DCAF1Q9Y4B6 1507 aa10.82□□□□□ -0.68
SF3B1-201ENST00000335508 CHIC1Q5VXU3 224 aa10.74□□□□□ -0.69
SF3B1-201ENST00000335508 NACADO15069 1562 aa10.74□□□□□ -0.69
SF3B1-201ENST00000335508 MYO15BQ96JP2 1530 aa10.7□□□□□ -0.7
SF3B1-201ENST00000335508 RB1CC1Q8TDY2 1594 aa10.69□□□□□ -0.7
SF3B1-201ENST00000335508 UBTFP17480 764 aaKnown RBP10.69□□□□□ -0.7
SF3B1-201ENST00000335508 SCRIBQ14160 1630 aa10.64□□□□□ -0.71
SF3B1-201ENST00000335508 EHMT2Q96KQ7 1210 aa10.63□□□□□ -0.71
SF3B1-201ENST00000335508 RSF1Q96T23 1441 aaPredicted RBP10.46□□□□□ -0.74
SF3B1-201ENST00000335508 CSRNP3Q8WYN3 585 aa10.43□□□□□ -0.74
SF3B1-201ENST00000335508 RANGAP1P46060 587 aaPredicted RBP10.41□□□□□ -0.74
SF3B1-201ENST00000335508 ZEB1P37275 1124 aaPredicted RBP10.4□□□□□ -0.74
SF3B1-201ENST00000335508 BAZ1AQ9NRL2 1556 aaPredicted RBP10.39□□□□□ -0.75
SF3B1-201ENST00000335508 ATP1B4Q9UN42 357 aaPredicted RBP10.38□□□□□ -0.75
SF3B1-201ENST00000335508 PCGF6Q9BYE7 350 aa10.38□□□□□ -0.75
SF3B1-201ENST00000335508 LOC105371045A0A1W2PR82 267 aa10.32□□□□□ -0.76
SF3B1-201ENST00000335508 TRIM26Q12899 539 aaPredicted RBP10.31□□□□□ -0.76
SF3B1-201ENST00000335508 EEA1Q15075 1411 aa10.29□□□□□ -0.76
SF3B1-201ENST00000335508 BAZ1BQ9UIG0 1483 aaKnown RBP10.28□□□□□ -0.76
SF3B1-201ENST00000335508 CECR2Q9BXF3 1484 aa10.27□□□□□ -0.77
SF3B1-201ENST00000335508 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.26□□□□□ -0.77
SF3B1-201ENST00000335508 HNRNPUL2Q1KMD3 747 aaKnown RBP10.26□□□□□ -0.77
SF3B1-201ENST00000335508 TTBK1Q5TCY1 1321 aaPredicted RBP10.24□□□□□ -0.77
SF3B1-201ENST00000335508 CCER1Q8TC90 406 aaPredicted RBP10.24□□□□□ -0.77
SF3B1-201ENST00000335508 WRNQ14191 1432 aaPredicted RBP eCLIP10.19□□□□□ -0.78
SF3B1-201ENST00000335508 CDK11AQ9UQ88 783 aaPredicted RBP10.19□□□□□ -0.78
SF3B1-201ENST00000335508 SMARCA2P51531 1590 aa10.17□□□□□ -0.78
SF3B1-201ENST00000335508 FBLN2P98095 1184 aa10.16□□□□□ -0.78
SF3B1-201ENST00000335508 MYT1Q01538 1121 aa10.15□□□□□ -0.78
SF3B1-201ENST00000335508 MROH2BQ7Z745 1585 aa10.12□□□□□ -0.79
SF3B1-201ENST00000335508 KIF27Q86VH2 1401 aa10.1□□□□□ -0.79
SF3B1-201ENST00000335508 ATAD2BQ9ULI0 1458 aa10.09□□□□□ -0.79
SF3B1-201ENST00000335508 PDS5BQ9NTI5 1447 aa10.09□□□□□ -0.79
SF3B1-201ENST00000335508 CADPSQ9ULU8 1353 aa10.09□□□□□ -0.79
SF3B1-201ENST00000335508 CHMP7Q8WUX9 453 aaPredicted RBP10.05□□□□□ -0.8
SF3B1-201ENST00000335508 NCAPD3P42695 1498 aa10.05□□□□□ -0.8
SF3B1-201ENST00000335508 PPARGC1BQ86YN6 1023 aaKnown RBP10.04□□□□□ -0.8
SF3B1-201ENST00000335508 ITGAEP38570 1179 aa10.03□□□□□ -0.8
SF3B1-201ENST00000335508 MYT1LQ9UL68 1186 aa10.02□□□□□ -0.81
SF3B1-201ENST00000335508 NPM1P06748 294 aaKnown RBP eCLIP10.01□□□□□ -0.81
SF3B1-201ENST00000335508 CCDC88BA6NC98 1476 aa9.99□□□□□ -0.81
SF3B1-201ENST00000335508 CLIP1P30622 1438 aa9.99□□□□□ -0.81
SF3B1-201ENST00000335508 TNIKQ9UKE5 1360 aa9.99□□□□□ -0.81
SF3B1-201ENST00000335508 CEP164Q9UPV0 1460 aa9.98□□□□□ -0.81
SF3B1-201ENST00000335508 ACIN1Q9UKV3 1341 aaKnown RBP9.98□□□□□ -0.81
SF3B1-201ENST00000335508 GOLGA3Q08378 1498 aa9.97□□□□□ -0.81
SF3B1-201ENST00000335508 TOP2AP11388 1531 aaKnown RBP9.97□□□□□ -0.81
SF3B1-201ENST00000335508 FAM50AQ14320 339 aaKnown RBP9.96□□□□□ -0.81
SF3B1-201ENST00000335508 HRCP23327 699 aa9.96□□□□□ -0.82
SF3B1-201ENST00000335508 P3H3Q8IVL6 736 aa9.95□□□□□ -0.82
SF3B1-201ENST00000335508 PELP1Q8IZL8 1130 aaKnown RBP9.95□□□□□ -0.82
SF3B1-201ENST00000335508 ERCC6Q03468 1493 aa9.94□□□□□ -0.82
SF3B1-201ENST00000335508 CARMIL1Q5VZK9 1371 aa9.92□□□□□ -0.82
SF3B1-201ENST00000335508 ABCC8Q09428 1581 aa9.91□□□□□ -0.82
SF3B1-201ENST00000335508 SMARCA4P51532 1647 aa9.9□□□□□ -0.82
SF3B1-201ENST00000335508 CENPBP07199 599 aaPredicted RBP9.9□□□□□ -0.82
SF3B1-201ENST00000335508 MTUS2Q5JR59 1369 aa9.9□□□□□ -0.82
SF3B1-201ENST00000335508 SLC24A1O60721 1099 aa9.9□□□□□ -0.83
SF3B1-201ENST00000335508 CUX2O14529 1486 aa9.89□□□□□ -0.83
SF3B1-201ENST00000335508 PLEKHD1A6NEE1 506 aa9.88□□□□□ -0.83
SF3B1-201ENST00000335508 TSPY4P0CV99 314 aa9.87□□□□□ -0.83
SF3B1-201ENST00000335508 TSPY10P0CW01 314 aa9.87□□□□□ -0.83
SF3B1-201ENST00000335508 CEP162Q5TB80 1403 aa9.86□□□□□ -0.83
SF3B1-201ENST00000335508 FHAD1B1AJZ9 1412 aa9.86□□□□□ -0.83
SF3B1-201ENST00000335508 SOGA1O94964 1423 aa9.85□□□□□ -0.83
SF3B1-201ENST00000335508 TRIM52Q96A61 297 aa9.85□□□□□ -0.83
SF3B1-201ENST00000335508 EIF4G1Q04637 1599 aaKnown RBP9.83□□□□□ -0.84
SF3B1-201ENST00000335508 TDRD9Q8NDG6 1382 aaKnown RBP9.83□□□□□ -0.84
SF3B1-201ENST00000335508 ZNF777Q9ULD5 760 aaPredicted RBP9.79□□□□□ -0.84
SF3B1-201ENST00000335508 CFTRP13569 1480 aa9.79□□□□□ -0.84
SF3B1-201ENST00000335508 HMGXB3Q12766 1538 aa9.79□□□□□ -0.84
SF3B1-201ENST00000335508 FANCD2Q9BXW9 1451 aa9.78□□□□□ -0.84
SF3B1-201ENST00000335508 CARMIL2Q6F5E8 1435 aa9.78□□□□□ -0.84
SF3B1-201ENST00000335508 ARID3CA6NKF2 412 aa9.78□□□□□ -0.84
SF3B1-201ENST00000335508 WIZO95785 1651 aa9.75□□□□□ -0.85
SF3B1-201ENST00000335508 FMN1Q68DA7 1419 aa9.74□□□□□ -0.85
SF3B1-201ENST00000335508 VPS8Q8N3P4 1428 aa9.74□□□□□ -0.85
SF3B1-201ENST00000335508 CFDP1Q9UEE9 299 aaPredicted RBP9.73□□□□□ -0.85
SF3B1-201ENST00000335508 ESF1Q9H501 851 aaKnown RBP9.73□□□□□ -0.85
SF3B1-201ENST00000335508 RAPGEF2Q9Y4G8 1499 aa9.71□□□□□ -0.85
SF3B1-201ENST00000335508 CLSPNQ9HAW4 1339 aa9.71□□□□□ -0.85
SF3B1-201ENST00000335508 BICRAQ9NZM4 1560 aa9.7□□□□□ -0.86
SF3B1-201ENST00000335508 IGF1RP08069 1367 aa9.69□□□□□ -0.86
SF3B1-201ENST00000335508 JPH4Q96JJ6 628 aa9.69□□□□□ -0.86
SF3B1-201ENST00000335508 NEFLP07196 543 aa9.67□□□□□ -0.86
SF3B1-201ENST00000335508 TONSLQ96HA7 1378 aa9.66□□□□□ -0.86
SF3B1-201ENST00000335508 TIMELESSQ9UNS1 1208 aa9.65□□□□□ -0.86
SF3B1-201ENST00000335508 NEUROD1Q13562 356 aa9.65□□□□□ -0.86
SF3B1-201ENST00000335508 RSPH4AQ5TD94 716 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms