Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 TMEM259-204ENST00000586285 626 ntTSL 315.05■□□□□ -01e-10■□□□□ 10.8
YBX3P16989 GANAB-215ENST00000534779 2626 ntAPPRIS ALT2 TSL 2 BASIC12.54□□□□□ -0.42e-17■□□□□ 10.8
YBX3P16989 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC24.83■■□□□ 1.572e-6■□□□□ 10.8
YBX3P16989 ELAC2-218ENST00000584650 2087 ntTSL 221.95■■□□□ 1.12e-6■□□□□ 10.8
YBX3P16989 ELAC2-219ENST00000609101 866 ntTSL 519.02■□□□□ 0.642e-6■□□□□ 10.8
YBX3P16989 ELAC2-215ENST00000580504 579 ntTSL 418.1■□□□□ 0.492e-6■□□□□ 10.8
YBX3P16989 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC18.02■□□□□ 0.472e-6■□□□□ 10.8
YBX3P16989 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.87■□□□□ 0.452e-6■□□□□ 10.8
YBX3P16989 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.152e-6■□□□□ 10.8
YBX3P16989 ELAC2-221ENST00000609757 588 ntTSL 414.12□□□□□ -0.152e-6■□□□□ 10.8
YBX3P16989 ELAC2-220ENST00000609345 849 ntTSL 314.09□□□□□ -0.152e-6■□□□□ 10.8
YBX3P16989 ELAC2-208ENST00000484122 3738 ntTSL 213.61□□□□□ -0.232e-6■□□□□ 10.8
YBX3P16989 ELAC2-216ENST00000581499 581 ntTSL 411.42□□□□□ -0.582e-6■□□□□ 10.8
YBX3P16989 ELAC2-217ENST00000583371 479 ntTSL 49.11□□□□□ -0.952e-6■□□□□ 10.8
YBX3P16989 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.076e-10■□□□□ 10.8
YBX3P16989 VDAC2-212ENST00000481876 822 ntTSL 321.38■■□□□ 1.016e-10■□□□□ 10.8
YBX3P16989 VDAC2-210ENST00000472137 859 ntTSL 520.67■□□□□ 0.96e-10■□□□□ 10.8
YBX3P16989 VDAC2-204ENST00000344036 681 ntTSL 320.61■□□□□ 0.896e-10■□□□□ 10.8
YBX3P16989 VDAC2-208ENST00000468285 850 ntTSL 220.06■□□□□ 0.86e-10■□□□□ 10.8
YBX3P16989 VDAC2-211ENST00000475142 819 ntTSL 320.06■□□□□ 0.86e-10■□□□□ 10.8
YBX3P16989 VDAC2-213ENST00000498394 804 ntTSL 518.69■□□□□ 0.586e-10■□□□□ 10.8
YBX3P16989 VDAC2-202ENST00000313132 1467 ntTSL 1 (best) BASIC17.68■□□□□ 0.426e-10■□□□□ 10.8
YBX3P16989 VDAC2-201ENST00000298468 931 ntTSL 59.72□□□□□ -0.856e-10■□□□□ 10.8
YBX3P16989 VDAC2-214ENST00000543351 1424 ntAPPRIS P1 TSL 5 BASIC8.74□□□□□ -1.016e-10■□□□□ 10.8
YBX3P16989 CALU-204ENST00000493278 589 ntTSL 35.78□□□□□ -1.482e-13■□□□□ 10.8
YBX3P16989 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.253e-7■□□□□ 10.8
YBX3P16989 NME2-203ENST00000485076 554 ntTSL 1 (best)22.53■■□□□ 1.25e-32■□□□□ 10.8
YBX3P16989 UBC-209ENST00000541272 582 ntTSL 516.61■□□□□ 0.252e-13■□□□□ 10.8
YBX3P16989 LBR-205ENST00000425080 874 ntTSL 311.3□□□□□ -0.61e-14■□□□□ 10.8
YBX3P16989 MSH2-206ENST00000543555 3024 ntTSL 2 BASIC15.45■□□□□ 0.061e-6■□□□□ 10.8
YBX3P16989 MSH2-201ENST00000233146 3307 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.281e-6■□□□□ 10.8
YBX3P16989 MSH2-202ENST00000406134 3628 ntTSL 1 (best) BASIC10.05□□□□□ -0.81e-6■□□□□ 10.8
YBX3P16989 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.699e-18■□□□□ 10.8
YBX3P16989 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC18.13■□□□□ 0.499e-18■□□□□ 10.8
YBX3P16989 EXOC4-204ENST00000460346 762 ntTSL 411.57□□□□□ -0.565e-7■□□□□ 10.8
YBX3P16989 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC28.07■■■□□ 2.083e-8■□□□□ 10.8
YBX3P16989 KHDRBS1-203ENST00000484270 1989 ntTSL 521.26■□□□□ 0.993e-8■□□□□ 10.8
YBX3P16989 KHDRBS1-201ENST00000307714 2738 ntTSL 1 (best)20.56■□□□□ 0.883e-8■□□□□ 10.8
YBX3P16989 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.123e-8■□□□□ 10.8
YBX3P16989 TMOD3-207ENST00000560549 1474 ntTSL 1 (best)6.18□□□□□ -1.421e-6■□□□□ 10.8
YBX3P16989 SLC39A10-206ENST00000444421 544 ntTSL 47.85□□□□□ -1.152e-6■□□□□ 10.8
YBX3P16989 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.685e-9■□□□□ 10.8
YBX3P16989 PIGC-206ENST00000484368 1661 ntTSL 1 (best)17.05■□□□□ 0.325e-9■□□□□ 10.8
YBX3P16989 PIGC-202ENST00000367728 2630 ntAPPRIS P1 BASIC15.03■□□□□ -05e-9■□□□□ 10.8
YBX3P16989 NAXE-205ENST00000488840 529 ntTSL 210.16□□□□□ -0.787e-9■□□□□ 10.8
YBX3P16989 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.252e-9■□□□□ 10.8
YBX3P16989 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.032e-9■□□□□ 10.8
YBX3P16989 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.223e-7■□□□□ 10.8
YBX3P16989 PIH1D1-210ENST00000596651 741 ntTSL 322.66■■□□□ 1.223e-7■□□□□ 10.8
YBX3P16989 PIH1D1-212ENST00000596916 793 ntTSL 521.53■■□□□ 1.043e-7■□□□□ 10.8
YBX3P16989 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.993e-7■□□□□ 10.8
YBX3P16989 PIH1D1-219ENST00000600875 633 ntTSL 517.29■□□□□ 0.363e-7■□□□□ 10.8
YBX3P16989 RPS11-206ENST00000600027 944 ntTSL 514.54□□□□□ -0.082e-51■□□□□ 10.8
YBX3P16989 RPS11-204ENST00000599167 1133 ntTSL 513.96□□□□□ -0.172e-51■□□□□ 10.8
YBX3P16989 RPS11-201ENST00000270625 614 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.372e-51■□□□□ 10.8
YBX3P16989 RPS11-209ENST00000602252 751 ntTSL 211.34□□□□□ -0.592e-51■□□□□ 10.8
YBX3P16989 RPS11-208ENST00000601306 547 ntTSL 310.26□□□□□ -0.772e-51■□□□□ 10.8
YBX3P16989 RPS11-205ENST00000599561 430 ntTSL 5 BASIC8.9□□□□□ -0.982e-51■□□□□ 10.8
YBX3P16989 RPS11-202ENST00000594493 575 ntTSL 3 BASIC8.3□□□□□ -1.082e-51■□□□□ 10.8
YBX3P16989 NBAS-202ENST00000417461 1330 ntTSL 222.34■■□□□ 1.177e-8■□□□□ 10.8
YBX3P16989 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.423e-6■□□□□ 10.8
YBX3P16989 NMD3-206ENST00000472947 2378 ntTSL 1 (best) BASIC12.03□□□□□ -0.483e-6■□□□□ 10.8
YBX3P16989 NMD3-201ENST00000351193 3049 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.093e-6■□□□□ 10.8
YBX3P16989 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.332e-7■□□□□ 10.8
YBX3P16989 NME2-208ENST00000570801 565 ntTSL 217.79■□□□□ 0.442e-15■□□□□ 10.8
YBX3P16989 PSMD8-206ENST00000592001 853 ntTSL 212.11□□□□□ -0.474e-17■□□□□ 10.8
YBX3P16989 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.911e-6■□□□□ 10.8
YBX3P16989 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.481e-6■□□□□ 10.8
YBX3P16989 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC21.19■□□□□ 0.982e-8■□□□□ 10.8
YBX3P16989 EIF4A1-207ENST00000578324 1577 ntTSL 518.13■□□□□ 0.492e-8■□□□□ 10.8
YBX3P16989 EIF4A1-218ENST00000581544 1444 ntTSL 213.14□□□□□ -0.312e-8■□□□□ 10.8
YBX3P16989 SSR2-205ENST00000472467 1833 ntTSL 211.05□□□□□ -0.641e-8■□□□□ 10.8
YBX3P16989 EIF4G2-215ENST00000530564 849 ntTSL 28.09□□□□□ -1.119e-9■□□□□ 10.8
YBX3P16989 SFXN1-209ENST00000508290 592 ntTSL 425.94■■□□□ 1.741e-8■□□□□ 10.8
YBX3P16989 ANP32B-201ENST00000339399 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.266e-22■□□□□ 10.8
YBX3P16989 EIF2D-203ENST00000437518 920 ntTSL 312.8□□□□□ -0.368e-7■□□□□ 10.8
YBX3P16989 PABPC1-219ENST00000522387 2331 ntTSL 2 BASIC15.09■□□□□ 0.013e-36■□□□□ 10.8
YBX3P16989 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.123e-36■□□□□ 10.8
YBX3P16989 PABPC1-208ENST00000519004 2401 ntTSL 2 BASIC13.85□□□□□ -0.193e-36■□□□□ 10.8
YBX3P16989 PABPC1-203ENST00000517921 885 ntTSL 512.87□□□□□ -0.353e-36■□□□□ 10.8
YBX3P16989 PABPC1-222ENST00000523555 522 ntTSL 312.57□□□□□ -0.43e-36■□□□□ 10.8
YBX3P16989 PABPC1-224ENST00000610907 1569 ntTSL 1 (best) BASIC10.86□□□□□ -0.673e-36■□□□□ 10.8
YBX3P16989 APOB-201ENST00000233242 14121 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.091e-49■□□□□ 10.8
YBX3P16989 COX5B-203ENST00000491989 611 ntTSL 313.42□□□□□ -0.262e-19■□□□□ 10.8
YBX3P16989 GNB2-208ENST00000431068 910 ntTSL 524.22■■□□□ 1.474e-8■□□□□ 10.8
YBX3P16989 SDHA-205ENST00000504824 1430 ntTSL 523.27■■□□□ 1.321e-9■□□□□ 10.8
YBX3P16989 SDHA-210ENST00000509420 580 ntTSL 218.15■□□□□ 0.51e-9■□□□□ 10.8
YBX3P16989 SDHA-217ENST00000514233 558 ntTSL 412.52□□□□□ -0.411e-9■□□□□ 10.8
YBX3P16989 SNF8-213ENST00000514929 775 ntTSL 532.46■■■□□ 2.797e-7■□□□□ 10.8
YBX3P16989 SNF8-205ENST00000507302 742 ntTSL 323.33■■□□□ 1.337e-7■□□□□ 10.8
YBX3P16989 ERH-201ENST00000216520 668 ntTSL 320.92■□□□□ 0.942e-8■□□□□ 10.8
YBX3P16989 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.882e-8■□□□□ 10.8
YBX3P16989 COPB1-204ENST00000526191 697 ntTSL 29.12□□□□□ -0.952e-8■□□□□ 10.8
YBX3P16989 ARPC3-209ENST00000549408 209 ntTSL 56.39□□□□□ -1.395e-23■□□□□ 10.8
YBX3P16989 MYO19-204ENST00000610992 5743 ntTSL 213.94□□□□□ -0.182e-6■□□□□ 10.8
YBX3P16989 MYO19-203ENST00000610930 3271 ntTSL 5 BASIC12.96□□□□□ -0.342e-6■□□□□ 10.8
YBX3P16989 MYO19-213ENST00000614623 4054 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.452e-6■□□□□ 10.8
YBX3P16989 MYO19-226ENST00000621550 4299 ntTSL 511.14□□□□□ -0.632e-6■□□□□ 10.8
YBX3P16989 EIF4G2-232ENST00000640650 2724 ntAPPRIS P2 TSL 1 (best) BASIC10.49□□□□□ -0.737e-16■□□□□ 10.8
YBX3P16989 SNX2-209ENST00000510372 1412 ntTSL 25.91□□□□□ -1.463e-7■□□□□ 10.8
Retrieved 100 of 29,075 protein–RNA pairs in 230.5 ms