RNA–Protein interactions for RNA: ENST00000233146.6

MSH2-201, Transcript of mutS homolog 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH2, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-201ENST00000233146 PELP1Q8IZL8 1130 aaKnown RBP22.72■■□□□ 1.23
MSH2-201ENST00000233146 NISCHQ9Y2I1 1504 aa22.46■■□□□ 1.19
MSH2-201ENST00000233146 HRCP23327 699 aa22.34■■□□□ 1.17
MSH2-201ENST00000233146 MYT1Q01538 1121 aa22.08■■□□□ 1.13
MSH2-201ENST00000233146 PPARGC1BQ86YN6 1023 aaKnown RBP21.71■■□□□ 1.07
MSH2-201ENST00000233146 SCAF1Q9H7N4 1312 aaKnown RBP21.51■■□□□ 1.03
MSH2-201ENST00000233146 PCGF6Q9BYE7 350 aa21.39■■□□□ 1.01
MSH2-201ENST00000233146 MYO15BQ96JP2 1530 aa21.07■□□□□ 0.96
MSH2-201ENST00000233146 TTBK1Q5TCY1 1321 aaPredicted RBP20.99■□□□□ 0.95
MSH2-201ENST00000233146 DCAF1Q9Y4B6 1507 aa20.78■□□□□ 0.92
MSH2-201ENST00000233146 ACIN1Q9UKV3 1341 aaKnown RBP20.77■□□□□ 0.92
MSH2-201ENST00000233146 ZEB1P37275 1124 aaPredicted RBP20.73■□□□□ 0.91
MSH2-201ENST00000233146 CCDC180Q9P1Z9 1646 aa20.66■□□□□ 0.9
MSH2-201ENST00000233146 NEUROD1Q13562 356 aa20.63■□□□□ 0.89
MSH2-201ENST00000233146 TRIM26Q12899 539 aaPredicted RBP20.61■□□□□ 0.89
MSH2-201ENST00000233146 CHIC1Q5VXU3 224 aa20.61■□□□□ 0.89
MSH2-201ENST00000233146 GTF3C3Q9Y5Q9 886 aa20.58■□□□□ 0.89
MSH2-201ENST00000233146 SUPT5HO00267 1087 aaKnown RBP20.53■□□□□ 0.88
MSH2-201ENST00000233146 BCL11AQ9H165 835 aa20.45■□□□□ 0.86
MSH2-201ENST00000233146 CENPBP07199 599 aaPredicted RBP20.38■□□□□ 0.85
MSH2-201ENST00000233146 SHROOM4Q9ULL8 1493 aa20.3■□□□□ 0.84
MSH2-201ENST00000233146 FAM9AQ8IZU1 332 aaPredicted RBP20.27■□□□□ 0.84
MSH2-201ENST00000233146 PRKCSHP14314 528 aaPredicted RBP20.22■□□□□ 0.83
MSH2-201ENST00000233146 LOC105371045A0A1W2PR82 267 aa20.13■□□□□ 0.81
MSH2-201ENST00000233146 ANP32EQ9BTT0 268 aa20.01■□□□□ 0.79
MSH2-201ENST00000233146 DIEXFQ68CQ4 756 aaKnown RBP19.97■□□□□ 0.79
MSH2-201ENST00000233146 ERICH6Q7L0X2 663 aa19.8■□□□□ 0.76
MSH2-201ENST00000233146 CSRNP3Q8WYN3 585 aa19.77■□□□□ 0.76
MSH2-201ENST00000233146 APLP2Q06481 763 aa19.67■□□□□ 0.74
MSH2-201ENST00000233146 TRIM41Q8WV44 630 aa19.67■□□□□ 0.74
MSH2-201ENST00000233146 YTHDC1Q96MU7 727 aaKnown RBP19.6■□□□□ 0.73
MSH2-201ENST00000233146 TSHZ2Q9NRE2 1034 aa19.59■□□□□ 0.73
MSH2-201ENST00000233146 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.55■□□□□ 0.72
MSH2-201ENST00000233146 CCER1Q8TC90 406 aaPredicted RBP19.55■□□□□ 0.72
MSH2-201ENST00000233146 CLSPNQ9HAW4 1339 aa19.5■□□□□ 0.71
MSH2-201ENST00000233146 SUPT16HQ9Y5B9 1047 aaKnown RBP19.45■□□□□ 0.7
MSH2-201ENST00000233146 ZNF316A6NFI3 1004 aaPredicted RBP19.44■□□□□ 0.7
MSH2-201ENST00000233146 MIER1Q8N108 512 aa19.38■□□□□ 0.69
MSH2-201ENST00000233146 ZCCHC6Q5VYS8 1495 aaKnown RBP19.26■□□□□ 0.67
MSH2-201ENST00000233146 DCAF8L2P0C7V8 631 aa19.08■□□□□ 0.64
MSH2-201ENST00000233146 ANO8Q9HCE9 1232 aaPredicted RBP19.08■□□□□ 0.64
MSH2-201ENST00000233146 RBM19Q9Y4C8 960 aaKnown RBP19.03■□□□□ 0.64
MSH2-201ENST00000233146 MSH5O43196 834 aa18.96■□□□□ 0.63
MSH2-201ENST00000233146 MYT1LQ9UL68 1186 aa18.92■□□□□ 0.62
MSH2-201ENST00000233146 UBE2Q2Q8WVN8 375 aa18.85■□□□□ 0.61
MSH2-201ENST00000233146 DEKP35659 375 aaKnown RBP18.81■□□□□ 0.6
MSH2-201ENST00000233146 EHMT2Q96KQ7 1210 aa18.8■□□□□ 0.6
MSH2-201ENST00000233146 SALL2Q9Y467 1007 aaPredicted RBP18.79■□□□□ 0.6
MSH2-201ENST00000233146 ERICH6BQ5W0A0 696 aa18.79■□□□□ 0.6
MSH2-201ENST00000233146 BCANQ96GW7 911 aa18.79■□□□□ 0.6
MSH2-201ENST00000233146 FANCIQ9NVI1 1328 aa18.78■□□□□ 0.6
MSH2-201ENST00000233146 FKBP8Q14318 412 aa18.72■□□□□ 0.59
MSH2-201ENST00000233146 WRNQ14191 1432 aaPredicted RBP eCLIP18.69■□□□□ 0.58
MSH2-201ENST00000233146 CCDC136Q96JN2 1154 aa18.62■□□□□ 0.57
MSH2-201ENST00000233146 SLC24A1O60721 1099 aa18.58■□□□□ 0.56
MSH2-201ENST00000233146 ITGAEP38570 1179 aa18.53■□□□□ 0.56
MSH2-201ENST00000233146 NEFLP07196 543 aa18.51■□□□□ 0.55
MSH2-201ENST00000233146 KCNH8Q96L42 1107 aa18.46■□□□□ 0.55
MSH2-201ENST00000233146 ABCC9O60706 1549 aa18.44■□□□□ 0.54
MSH2-201ENST00000233146 EIF5BO60841 1220 aaKnown RBP18.44■□□□□ 0.54
MSH2-201ENST00000233146 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.41■□□□□ 0.54
MSH2-201ENST00000233146 IL27Q8NEV9 243 aa18.39■□□□□ 0.53
MSH2-201ENST00000233146 CDK11AQ9UQ88 783 aaPredicted RBP18.38■□□□□ 0.53
MSH2-201ENST00000233146 RB1CC1Q8TDY2 1594 aa18.38■□□□□ 0.53
MSH2-201ENST00000233146 RSF1Q96T23 1441 aaPredicted RBP18.35■□□□□ 0.53
MSH2-201ENST00000233146 CEP162Q5TB80 1403 aa18.34■□□□□ 0.53
MSH2-201ENST00000233146 HNRNPUL2Q1KMD3 747 aaKnown RBP18.33■□□□□ 0.53
MSH2-201ENST00000233146 PKNOX2Q96KN3 472 aa18.32■□□□□ 0.52
MSH2-201ENST00000233146 NBR1Q14596 966 aa18.3■□□□□ 0.52
MSH2-201ENST00000233146 RTN4Q9NQC3 1192 aaKnown RBP18.28■□□□□ 0.52
MSH2-201ENST00000233146 NOP58Q9Y2X3 529 aaKnown RBP18.28■□□□□ 0.52
MSH2-201ENST00000233146 PAK3O75914 559 aaPredicted RBP18.2■□□□□ 0.5
MSH2-201ENST00000233146 TNIKQ9UKE5 1360 aa18.19■□□□□ 0.5
MSH2-201ENST00000233146 DHX57Q6P158 1386 aaKnown RBP18.16■□□□□ 0.5
MSH2-201ENST00000233146 RTL5Q5HYW3 569 aaPredicted RBP18.15■□□□□ 0.5
MSH2-201ENST00000233146 TRIM52Q96A61 297 aa18.11■□□□□ 0.49
MSH2-201ENST00000233146 C11orf95C9JLR9 678 aaPredicted RBP18.11■□□□□ 0.49
MSH2-201ENST00000233146 WASHC2AQ641Q2 1341 aa18.08■□□□□ 0.49
MSH2-201ENST00000233146 CCER2I3L3R5 266 aa18.07■□□□□ 0.48
MSH2-201ENST00000233146 DAXXQ9UER7 740 aaPredicted RBP18.06■□□□□ 0.48
MSH2-201ENST00000233146 PLEKHG5O94827 1062 aa18.03■□□□□ 0.48
MSH2-201ENST00000233146 PPP4R2Q9NY27 417 aa18.02■□□□□ 0.48
MSH2-201ENST00000233146 NACADO15069 1562 aa18.02■□□□□ 0.47
MSH2-201ENST00000233146 WASHC2CQ9Y4E1 1318 aa18.01■□□□□ 0.47
MSH2-201ENST00000233146 IRX6P78412 446 aaPredicted RBP18■□□□□ 0.47
MSH2-201ENST00000233146 IPO9Q96P70 1041 aaKnown RBP17.99■□□□□ 0.47
MSH2-201ENST00000233146 DDX10Q13206 875 aaKnown RBP17.98■□□□□ 0.47
MSH2-201ENST00000233146 PODXL2Q9NZ53 605 aa17.98■□□□□ 0.47
MSH2-201ENST00000233146 PPP1R15AO75807 674 aaPredicted RBP17.96■□□□□ 0.47
MSH2-201ENST00000233146 ZBTB47Q9UFB7 747 aaPredicted RBP17.93■□□□□ 0.46
MSH2-201ENST00000233146 RSPH6AQ9H0K4 717 aa17.92■□□□□ 0.46
MSH2-201ENST00000233146 EIF4G1Q04637 1599 aaKnown RBP17.91■□□□□ 0.46
MSH2-201ENST00000233146 USP35Q9P2H5 1018 aa17.91■□□□□ 0.46
MSH2-201ENST00000233146 ANP32AP39687 249 aaKnown RBP17.9■□□□□ 0.46
MSH2-201ENST00000233146 BRPF3Q9ULD4 1205 aa17.88■□□□□ 0.45
MSH2-201ENST00000233146 ABCC8Q09428 1581 aa17.87■□□□□ 0.45
MSH2-201ENST00000233146 GLIPR1L2Q4G1C9 344 aa17.87■□□□□ 0.45
MSH2-201ENST00000233146 ANP32CO43423 234 aa17.87■□□□□ 0.45
MSH2-201ENST00000233146 UBTFP17480 764 aaKnown RBP17.87■□□□□ 0.45
MSH2-201ENST00000233146 ZMYND15Q9H091 742 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms