RNA–Protein interactions for RNA: ENST00000318607.9

PABPC1-201, Transcript of poly(A) binding protein cytoplasmic 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PABPC1, Length 3,485 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PABPC1-201ENST00000318607 NISCHQ9Y2I1 1504 aa27.42■■□□□ 1.98
PABPC1-201ENST00000318607 CCDC180Q9P1Z9 1646 aa25.31■■□□□ 1.64
PABPC1-201ENST00000318607 SHROOM4Q9ULL8 1493 aa24.6■■□□□ 1.53
PABPC1-201ENST00000318607 SUPT5HO00267 1087 aaKnown RBP24.54■■□□□ 1.52
PABPC1-201ENST00000318607 MYO15BQ96JP2 1530 aa23.96■■□□□ 1.43
PABPC1-201ENST00000318607 PCGF6Q9BYE7 350 aa23.94■■□□□ 1.42
PABPC1-201ENST00000318607 DCAF8L2P0C7V8 631 aa23.93■■□□□ 1.42
PABPC1-201ENST00000318607 DCAF1Q9Y4B6 1507 aa23.91■■□□□ 1.42
PABPC1-201ENST00000318607 PPARGC1BQ86YN6 1023 aaKnown RBP23.88■■□□□ 1.41
PABPC1-201ENST00000318607 HRCP23327 699 aa23.6■■□□□ 1.37
PABPC1-201ENST00000318607 EHMT2Q96KQ7 1210 aa23.44■■□□□ 1.34
PABPC1-201ENST00000318607 LOC105371045A0A1W2PR82 267 aa23.3■■□□□ 1.32
PABPC1-201ENST00000318607 ZCCHC6Q5VYS8 1495 aaKnown RBP23.3■■□□□ 1.32
PABPC1-201ENST00000318607 CHIC1Q5VXU3 224 aa23.25■■□□□ 1.31
PABPC1-201ENST00000318607 FAM9AQ8IZU1 332 aaPredicted RBP22.96■■□□□ 1.27
PABPC1-201ENST00000318607 NACADO15069 1562 aa22.92■■□□□ 1.26
PABPC1-201ENST00000318607 UNC13AQ9UPW8 1703 aa22.71■■□□□ 1.23
PABPC1-201ENST00000318607 TTBK1Q5TCY1 1321 aaPredicted RBP22.69■■□□□ 1.22
PABPC1-201ENST00000318607 TRIM26Q12899 539 aaPredicted RBP22.58■■□□□ 1.2
PABPC1-201ENST00000318607 SCAF1Q9H7N4 1312 aaKnown RBP22.45■■□□□ 1.18
PABPC1-201ENST00000318607 RB1CC1Q8TDY2 1594 aa22.42■■□□□ 1.18
PABPC1-201ENST00000318607 TRIM41Q8WV44 630 aa22.3■■□□□ 1.16
PABPC1-201ENST00000318607 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.27■■□□□ 1.16
PABPC1-201ENST00000318607 YTHDC1Q96MU7 727 aaKnown RBP22.19■■□□□ 1.14
PABPC1-201ENST00000318607 CCER1Q8TC90 406 aaPredicted RBP22.18■■□□□ 1.14
PABPC1-201ENST00000318607 PELP1Q8IZL8 1130 aaKnown RBP22.14■■□□□ 1.13
PABPC1-201ENST00000318607 BICRAQ9NZM4 1560 aa22.1■■□□□ 1.13
PABPC1-201ENST00000318607 ZEB1P37275 1124 aaPredicted RBP22.1■■□□□ 1.13
PABPC1-201ENST00000318607 NEUROD1Q13562 356 aa22.04■■□□□ 1.12
PABPC1-201ENST00000318607 GTF3C3Q9Y5Q9 886 aa22.03■■□□□ 1.12
PABPC1-201ENST00000318607 PEG3Q9GZU2 1588 aa22■■□□□ 1.11
PABPC1-201ENST00000318607 ABCC9O60706 1549 aa21.87■■□□□ 1.09
PABPC1-201ENST00000318607 ACIN1Q9UKV3 1341 aaKnown RBP21.85■■□□□ 1.09
PABPC1-201ENST00000318607 DIEXFQ68CQ4 756 aaKnown RBP21.83■■□□□ 1.09
PABPC1-201ENST00000318607 CENPBP07199 599 aaPredicted RBP21.76■■□□□ 1.07
PABPC1-201ENST00000318607 RANGAP1P46060 587 aaPredicted RBP21.75■■□□□ 1.07
PABPC1-201ENST00000318607 HNRNPUL2Q1KMD3 747 aaKnown RBP21.54■■□□□ 1.04
PABPC1-201ENST00000318607 UBTFP17480 764 aaKnown RBP21.46■■□□□ 1.03
PABPC1-201ENST00000318607 SMARCA2P51531 1590 aa21.46■■□□□ 1.03
PABPC1-201ENST00000318607 PRDM2Q13029 1718 aa21.43■■□□□ 1.02
PABPC1-201ENST00000318607 MIER1Q8N108 512 aa21.33■■□□□ 1.01
PABPC1-201ENST00000318607 SMARCA4P51532 1647 aa21.31■■□□□ 1
PABPC1-201ENST00000318607 SCRIBQ14160 1630 aa21.31■■□□□ 1
PABPC1-201ENST00000318607 EIF4G1Q04637 1599 aaKnown RBP21.29■■□□□ 1
PABPC1-201ENST00000318607 HMGXB3Q12766 1538 aa21.27■■□□□ 1
PABPC1-201ENST00000318607 BAZ1AQ9NRL2 1556 aaPredicted RBP21.25■□□□□ 0.99
PABPC1-201ENST00000318607 ZNF316A6NFI3 1004 aaPredicted RBP21.24■□□□□ 0.99
PABPC1-201ENST00000318607 MYT1Q01538 1121 aa21.23■□□□□ 0.99
PABPC1-201ENST00000318607 RSF1Q96T23 1441 aaPredicted RBP21.22■□□□□ 0.99
PABPC1-201ENST00000318607 BCANQ96GW7 911 aa21.15■□□□□ 0.98
PABPC1-201ENST00000318607 ITGAEP38570 1179 aa21.06■□□□□ 0.96
PABPC1-201ENST00000318607 APLP2Q06481 763 aa21.04■□□□□ 0.96
PABPC1-201ENST00000318607 PRKCSHP14314 528 aaPredicted RBP20.99■□□□□ 0.95
PABPC1-201ENST00000318607 TOP2AP11388 1531 aaKnown RBP20.93■□□□□ 0.94
PABPC1-201ENST00000318607 CECR2Q9BXF3 1484 aa20.91■□□□□ 0.94
PABPC1-201ENST00000318607 NCAPD3P42695 1498 aa20.84■□□□□ 0.93
PABPC1-201ENST00000318607 CSRNP3Q8WYN3 585 aa20.79■□□□□ 0.92
PABPC1-201ENST00000318607 CEP162Q5TB80 1403 aa20.76■□□□□ 0.91
PABPC1-201ENST00000318607 SOGA1O94964 1423 aa20.73■□□□□ 0.91
PABPC1-201ENST00000318607 KCNH8Q96L42 1107 aa20.73■□□□□ 0.91
PABPC1-201ENST00000318607 MROH2BQ7Z745 1585 aa20.73■□□□□ 0.91
PABPC1-201ENST00000318607 SUPT16HQ9Y5B9 1047 aaKnown RBP20.72■□□□□ 0.91
PABPC1-201ENST00000318607 HIRIP3Q9BW71 556 aaPredicted RBP20.71■□□□□ 0.91
PABPC1-201ENST00000318607 PABPN1Q86U42 306 aaKnown RBP eCLIP20.69■□□□□ 0.9
PABPC1-201ENST00000318607 ABCC8Q09428 1581 aa20.66■□□□□ 0.9
PABPC1-201ENST00000318607 CCDC88BA6NC98 1476 aa20.65■□□□□ 0.9
PABPC1-201ENST00000318607 WIZO95785 1651 aa20.63■□□□□ 0.89
PABPC1-201ENST00000318607 ATP1B4Q9UN42 357 aaPredicted RBP20.63■□□□□ 0.89
PABPC1-201ENST00000318607 FKBP8Q14318 412 aa20.6■□□□□ 0.89
PABPC1-201ENST00000318607 RUSC2Q8N2Y8 1516 aa20.6■□□□□ 0.89
PABPC1-201ENST00000318607 ATAD2BQ9ULI0 1458 aa20.58■□□□□ 0.88
PABPC1-201ENST00000318607 CC2D2AQ9P2K1 1620 aa20.55■□□□□ 0.88
PABPC1-201ENST00000318607 TRIM52Q96A61 297 aa20.55■□□□□ 0.88
PABPC1-201ENST00000318607 TSHZ2Q9NRE2 1034 aa20.55■□□□□ 0.88
PABPC1-201ENST00000318607 WDR97A6NE52 1622 aa20.55■□□□□ 0.88
PABPC1-201ENST00000318607 DDX10Q13206 875 aaKnown RBP20.52■□□□□ 0.88
PABPC1-201ENST00000318607 CNGB1Q14028 1251 aaPredicted RBP20.51■□□□□ 0.87
PABPC1-201ENST00000318607 IRX6P78412 446 aaPredicted RBP20.47■□□□□ 0.87
PABPC1-201ENST00000318607 BIVM-ERCC5R4GMW8 1640 aa20.47■□□□□ 0.87
PABPC1-201ENST00000318607 ANP32EQ9BTT0 268 aa20.43■□□□□ 0.86
PABPC1-201ENST00000318607 NEFLP07196 543 aa20.43■□□□□ 0.86
PABPC1-201ENST00000318607 BCL11AQ9H165 835 aa20.42■□□□□ 0.86
PABPC1-201ENST00000318607 TNIKQ9UKE5 1360 aa20.38■□□□□ 0.85
PABPC1-201ENST00000318607 LAMC3Q9Y6N6 1575 aa20.38■□□□□ 0.85
PABPC1-201ENST00000318607 KANK4Q5T7N3 995 aaPredicted RBP20.34■□□□□ 0.85
PABPC1-201ENST00000318607 CLIP1P30622 1438 aa20.32■□□□□ 0.84
PABPC1-201ENST00000318607 ERICH6Q7L0X2 663 aa20.32■□□□□ 0.84
PABPC1-201ENST00000318607 SENP3-EIF4A1A0A087X0R7 540 aa20.3■□□□□ 0.84
PABPC1-201ENST00000318607 FAM50AQ14320 339 aaKnown RBP20.3■□□□□ 0.84
PABPC1-201ENST00000318607 SIN3AQ96ST3 1273 aa20.29■□□□□ 0.84
PABPC1-201ENST00000318607 P3H3Q8IVL6 736 aa20.27■□□□□ 0.84
PABPC1-201ENST00000318607 WRNQ14191 1432 aaPredicted RBP eCLIP20.22■□□□□ 0.83
PABPC1-201ENST00000318607 SLC24A1O60721 1099 aa20.19■□□□□ 0.82
PABPC1-201ENST00000318607 RBM19Q9Y4C8 960 aaKnown RBP20.19■□□□□ 0.82
PABPC1-201ENST00000318607 CFTRP13569 1480 aa20.16■□□□□ 0.82
PABPC1-201ENST00000318607 GOLGA3Q08378 1498 aa20.16■□□□□ 0.82
PABPC1-201ENST00000318607 DHX57Q6P158 1386 aaKnown RBP20.1■□□□□ 0.81
PABPC1-201ENST00000318607 THOC2Q8NI27 1593 aaKnown RBP20.07■□□□□ 0.8
PABPC1-201ENST00000318607 ANP32CO43423 234 aa20.07■□□□□ 0.8
PABPC1-201ENST00000318607 HNRNPUQ00839 825 aaKnown RBP eCLIP20.07■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms