RNA–Protein interactions for RNA: ENST00000514929.1

SNF8-213, Transcript of SNF8, ESCRT-II complex subunit, humanhuman

TSL 5

Gene SNF8, Length 775 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNF8-213ENST00000514929 NISCHQ9Y2I1 1504 aa60.22■■■■■ 7.23
SNF8-213ENST00000514929 CCDC180Q9P1Z9 1646 aa53.75■■■■■ 6.2
SNF8-213ENST00000514929 ABCC9O60706 1549 aa53.12■■■■■ 6.09
SNF8-213ENST00000514929 RB1CC1Q8TDY2 1594 aa50.86■■■■■ 5.73
SNF8-213ENST00000514929 NACADO15069 1562 aa50.66■■■■■ 5.7
SNF8-213ENST00000514929 DCAF8L2P0C7V8 631 aa50.63■■■■■ 5.7
SNF8-213ENST00000514929 MYO15BQ96JP2 1530 aa50.16■■■■■ 5.62
SNF8-213ENST00000514929 ZCCHC6Q5VYS8 1495 aaKnown RBP50.05■■■■■ 5.6
SNF8-213ENST00000514929 DCAF1Q9Y4B6 1507 aa49.77■■■■■ 5.56
SNF8-213ENST00000514929 UNC13AQ9UPW8 1703 aa49.67■■■■■ 5.54
SNF8-213ENST00000514929 PABPN1Q86U42 306 aaKnown RBP eCLIP49.56■■■■■ 5.52
SNF8-213ENST00000514929 BICRAQ9NZM4 1560 aa49.3■■■■■ 5.48
SNF8-213ENST00000514929 DNAJC5BQ9UF47 199 aa49.16■■■■■ 5.46
SNF8-213ENST00000514929 SCRIBQ14160 1630 aa49.05■■■■■ 5.44
SNF8-213ENST00000514929 SHROOM4Q9ULL8 1493 aa48.74■■■■■ 5.39
SNF8-213ENST00000514929 EIF4G1Q04637 1599 aaKnown RBP48.07■■■■■ 5.29
SNF8-213ENST00000514929 CC2D2AQ9P2K1 1620 aa48■■■■■ 5.27
SNF8-213ENST00000514929 CECR2Q9BXF3 1484 aa47.77■■■■■ 5.24
SNF8-213ENST00000514929 SMARCA4P51532 1647 aa46.84■■■■■ 5.09
SNF8-213ENST00000514929 NCAPD3P42695 1498 aa46.75■■■■■ 5.07
SNF8-213ENST00000514929 BAZ1AQ9NRL2 1556 aaPredicted RBP46.73■■■■■ 5.07
SNF8-213ENST00000514929 ATAD2BQ9ULI0 1458 aa46.7■■■■■ 5.07
SNF8-213ENST00000514929 SMARCA2P51531 1590 aa46.64■■■■■ 5.06
SNF8-213ENST00000514929 HMGXB3Q12766 1538 aa46.47■■■■■ 5.03
SNF8-213ENST00000514929 MROH2BQ7Z745 1585 aa46.41■■■■■ 5.02
SNF8-213ENST00000514929 PEG3Q9GZU2 1588 aa46.35■■■■■ 5.01
SNF8-213ENST00000514929 BAZ1BQ9UIG0 1483 aaKnown RBP46.32■■■■■ 5.01
SNF8-213ENST00000514929 WIZO95785 1651 aa45.9■■■■■ 4.94
SNF8-213ENST00000514929 ERCC6Q03468 1493 aa45.85■■■■■ 4.93
SNF8-213ENST00000514929 NESP48681 1621 aa45.81■■■■■ 4.92
SNF8-213ENST00000514929 RSF1Q96T23 1441 aaPredicted RBP45.69■■■■■ 4.91
SNF8-213ENST00000514929 LAMC3Q9Y6N6 1575 aa45.62■■■■■ 4.89
SNF8-213ENST00000514929 CUX2O14529 1486 aa45.49■■■■■ 4.87
SNF8-213ENST00000514929 TOP2AP11388 1531 aaKnown RBP45.37■■■■■ 4.85
SNF8-213ENST00000514929 CADPSQ9ULU8 1353 aa45.37■■■■■ 4.85
SNF8-213ENST00000514929 PDS5BQ9NTI5 1447 aa45.35■■■■■ 4.85
SNF8-213ENST00000514929 KIF21AQ7Z4S6 1674 aa45.24■■■■■ 4.83
SNF8-213ENST00000514929 THOC2Q8NI27 1593 aaKnown RBP45.2■■■■■ 4.83
SNF8-213ENST00000514929 CFTRP13569 1480 aa44.98■■■■■ 4.79
SNF8-213ENST00000514929 MRC2Q9UBG0 1479 aa44.9■■■■■ 4.78
SNF8-213ENST00000514929 FANCD2Q9BXW9 1451 aa44.87■■■■■ 4.77
SNF8-213ENST00000514929 CEP164Q9UPV0 1460 aa44.87■■■■■ 4.77
SNF8-213ENST00000514929 CCDC88BA6NC98 1476 aa44.85■■■■■ 4.77
SNF8-213ENST00000514929 WDR62O43379 1518 aa44.74■■■■■ 4.75
SNF8-213ENST00000514929 DNAJC5Q9H3Z4 198 aa44.68■■■■■ 4.74
SNF8-213ENST00000514929 PRDM2Q13029 1718 aa44.61■■■■■ 4.73
SNF8-213ENST00000514929 URB2Q14146 1524 aaKnown RBP44.43■■■■■ 4.7
SNF8-213ENST00000514929 SUPT5HO00267 1087 aaKnown RBP44.25■■■■■ 4.67
SNF8-213ENST00000514929 TOPBP1Q92547 1522 aa44.09■■■■■ 4.65
SNF8-213ENST00000514929 ABCC8Q09428 1581 aa44.06■■■■■ 4.64
SNF8-213ENST00000514929 DNMBPQ6XZF7 1577 aa44■■■■■ 4.63
SNF8-213ENST00000514929 IFT140Q96RY7 1462 aa43.93■■■■■ 4.62
SNF8-213ENST00000514929 ZNF608Q9ULD9 1512 aaPredicted RBP43.78■■■■■ 4.6
SNF8-213ENST00000514929 POLA1P09884 1462 aaPredicted RBP43.68■■■■■ 4.58
SNF8-213ENST00000514929 TARBP1Q13395 1621 aaKnown RBP43.63■■■■■ 4.58
SNF8-213ENST00000514929 EIF4G3O43432 1585 aaKnown RBP43.59■■■■■ 4.57
SNF8-213ENST00000514929 CUX1P39880 1505 aa43.57■■■■■ 4.56
SNF8-213ENST00000514929 OSCARQ8IYS5 282 aa43.55■■■■■ 4.56
SNF8-213ENST00000514929 FGD5Q6ZNL6 1462 aa43.51■■■■■ 4.56
SNF8-213ENST00000514929 SOGA1O94964 1423 aa43.51■■■■■ 4.56
SNF8-213ENST00000514929 RAD54L2Q9Y4B4 1467 aa43.51■■■■■ 4.56
SNF8-213ENST00000514929 AQRO60306 1485 aaKnown RBP eCLIP43.48■■■■■ 4.553e-6■■■□□ 17.8
SNF8-213ENST00000514929 TDRD9Q8NDG6 1382 aaKnown RBP43.33■■■■■ 4.53
SNF8-213ENST00000514929 WDR97A6NE52 1622 aa43.25■■■■■ 4.51
SNF8-213ENST00000514929 CHD1O14646 1710 aa43.14■■■■■ 4.5
SNF8-213ENST00000514929 FBLN2P98095 1184 aa43.13■■■■■ 4.49
SNF8-213ENST00000514929 WRNQ14191 1432 aaPredicted RBP eCLIP43.13■■■■■ 4.49
SNF8-213ENST00000514929 SNAPC4Q5SXM2 1469 aa43.07■■■■■ 4.49
SNF8-213ENST00000514929 TRIM41Q8WV44 630 aa43.07■■■■■ 4.49
SNF8-213ENST00000514929 TOP2BQ02880 1626 aa43.06■■■■■ 4.48
SNF8-213ENST00000514929 BIVM-ERCC5R4GMW8 1640 aa43.06■■■■■ 4.48
SNF8-213ENST00000514929 GRIN2BQ13224 1484 aa43.06■■■■■ 4.48
SNF8-213ENST00000514929 ABCA10Q8WWZ4 1543 aa43.05■■■■■ 4.48
SNF8-213ENST00000514929 SYNJ1O43426 1573 aa43.03■■■■■ 4.48
SNF8-213ENST00000514929 GAPVD1Q14C86 1478 aa43■■■■■ 4.47
SNF8-213ENST00000514929 MAGI1Q96QZ7 1491 aaPredicted RBP42.99■■■■■ 4.47
SNF8-213ENST00000514929 PBRM1Q86U86 1689 aa42.93■■■■■ 4.46
SNF8-213ENST00000514929 ABCA5Q8WWZ7 1642 aa42.92■■■■■ 4.46
SNF8-213ENST00000514929 CHMP7Q8WUX9 453 aaPredicted RBP42.9■■■■■ 4.46
SNF8-213ENST00000514929 RIMBP3CA6NJZ7 1639 aa42.89■■■■■ 4.46
SNF8-213ENST00000514929 RIMBP3BA6NNM3 1639 aa42.89■■■■■ 4.46
SNF8-213ENST00000514929 RIMBP3Q9UFD9 1639 aa42.89■■■■■ 4.46
SNF8-213ENST00000514929 SYNJ2O15056 1496 aa42.83■■■■■ 4.45
SNF8-213ENST00000514929 ARHGEF11O15085 1522 aa42.82■■■■■ 4.45
SNF8-213ENST00000514929 CLASP1Q7Z460 1538 aa42.64■■■■■ 4.42
SNF8-213ENST00000514929 ADAMTS12P58397 1594 aa42.56■■■■■ 4.4
SNF8-213ENST00000514929 ERICH3Q5RHP9 1530 aa42.53■■■■■ 4.4
SNF8-213ENST00000514929 CYB5RLQ6IPT4 315 aa42.5■■■■■ 4.39
SNF8-213ENST00000514929 GRIN2AQ12879 1464 aa42.49■■■■■ 4.39
SNF8-213ENST00000514929 FHAD1B1AJZ9 1412 aa42.47■■■■■ 4.39
SNF8-213ENST00000514929 ARAP1Q96P48 1450 aa42.44■■■■■ 4.38
SNF8-213ENST00000514929 NUP160Q12769 1436 aa42.3■■■■■ 4.36
SNF8-213ENST00000514929 CEP170Q5SW79 1584 aa42.3■■■■■ 4.36
SNF8-213ENST00000514929 KIF27Q86VH2 1401 aa42.27■■■■■ 4.36
SNF8-213ENST00000514929 IGF1RP08069 1367 aa42.13■■■■■ 4.33
SNF8-213ENST00000514929 CUL7Q14999 1698 aa42.06■■■■■ 4.32
SNF8-213ENST00000514929 SHROOM2Q13796 1616 aa42.04■■■■■ 4.32
SNF8-213ENST00000514929 ERCC6L2Q5T890 1561 aa42.03■■■■■ 4.32
SNF8-213ENST00000514929 RUSC2Q8N2Y8 1516 aa41.95■■■■■ 4.31
SNF8-213ENST00000514929 JPH4Q96JJ6 628 aa41.91■■■■■ 4.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms