RNA–Protein interactions for RNA: ENST00000517921.1

PABPC1-203, Transcript of poly(A) binding protein cytoplasmic 1, humanhuman

TSL 5

Gene PABPC1, Length 885 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PABPC1-203ENST00000517921 NISCHQ9Y2I1 1504 aa24.75■■□□□ 1.55
PABPC1-203ENST00000517921 CCDC180Q9P1Z9 1646 aa21.84■■□□□ 1.09
PABPC1-203ENST00000517921 ABCC9O60706 1549 aa20.99■□□□□ 0.95
PABPC1-203ENST00000517921 ZCCHC6Q5VYS8 1495 aaKnown RBP20.77■□□□□ 0.92
PABPC1-203ENST00000517921 DCAF1Q9Y4B6 1507 aa20.51■□□□□ 0.87
PABPC1-203ENST00000517921 MYO15BQ96JP2 1530 aa20.37■□□□□ 0.85
PABPC1-203ENST00000517921 NACADO15069 1562 aa20.31■□□□□ 0.84
PABPC1-203ENST00000517921 DCAF8L2P0C7V8 631 aa20.29■□□□□ 0.84
PABPC1-203ENST00000517921 RB1CC1Q8TDY2 1594 aa20.19■□□□□ 0.82
PABPC1-203ENST00000517921 SCRIBQ14160 1630 aa19.95■□□□□ 0.78
PABPC1-203ENST00000517921 UNC13AQ9UPW8 1703 aa19.95■□□□□ 0.78
PABPC1-203ENST00000517921 SHROOM4Q9ULL8 1493 aa19.88■□□□□ 0.77
PABPC1-203ENST00000517921 PABPN1Q86U42 306 aaKnown RBP eCLIP19.62■□□□□ 0.73
PABPC1-203ENST00000517921 BICRAQ9NZM4 1560 aa19.61■□□□□ 0.73
PABPC1-203ENST00000517921 DNAJC5BQ9UF47 199 aa19.5■□□□□ 0.71
PABPC1-203ENST00000517921 CECR2Q9BXF3 1484 aa19.21■□□□□ 0.67
PABPC1-203ENST00000517921 BAZ1AQ9NRL2 1556 aaPredicted RBP19.15■□□□□ 0.66
PABPC1-203ENST00000517921 SMARCA4P51532 1647 aa19.14■□□□□ 0.66
PABPC1-203ENST00000517921 MROH2BQ7Z745 1585 aa19.1■□□□□ 0.65
PABPC1-203ENST00000517921 RSF1Q96T23 1441 aaPredicted RBP19.05■□□□□ 0.64
PABPC1-203ENST00000517921 EIF4G1Q04637 1599 aaKnown RBP19.02■□□□□ 0.63
PABPC1-203ENST00000517921 WIZO95785 1651 aa18.98■□□□□ 0.63
PABPC1-203ENST00000517921 SUPT5HO00267 1087 aaKnown RBP18.94■□□□□ 0.62
PABPC1-203ENST00000517921 PEG3Q9GZU2 1588 aa18.93■□□□□ 0.62
PABPC1-203ENST00000517921 CC2D2AQ9P2K1 1620 aa18.92■□□□□ 0.62
PABPC1-203ENST00000517921 SMARCA2P51531 1590 aa18.84■□□□□ 0.61
PABPC1-203ENST00000517921 ATAD2BQ9ULI0 1458 aa18.81■□□□□ 0.6
PABPC1-203ENST00000517921 TOP2AP11388 1531 aaKnown RBP18.78■□□□□ 0.6
PABPC1-203ENST00000517921 HMGXB3Q12766 1538 aa18.72■□□□□ 0.59
PABPC1-203ENST00000517921 BAZ1BQ9UIG0 1483 aaKnown RBP18.69■□□□□ 0.58
PABPC1-203ENST00000517921 NCAPD3P42695 1498 aa18.68■□□□□ 0.58
PABPC1-203ENST00000517921 AEBP2Q6ZN18 517 aaPredicted RBP18.53■□□□□ 0.56
PABPC1-203ENST00000517921 CCDC88BA6NC98 1476 aa18.51■□□□□ 0.55
PABPC1-203ENST00000517921 PRDM2Q13029 1718 aa18.35■□□□□ 0.53
PABPC1-203ENST00000517921 CFTRP13569 1480 aa18.2■□□□□ 0.5
PABPC1-203ENST00000517921 LAMC3Q9Y6N6 1575 aa18.16■□□□□ 0.5
PABPC1-203ENST00000517921 CADPSQ9ULU8 1353 aa18.15■□□□□ 0.5
PABPC1-203ENST00000517921 ERCC6Q03468 1493 aa18.14■□□□□ 0.5
PABPC1-203ENST00000517921 NESP48681 1621 aa18.11■□□□□ 0.49
PABPC1-203ENST00000517921 ABCC8Q09428 1581 aa18.08■□□□□ 0.48
PABPC1-203ENST00000517921 CHIC1Q5VXU3 224 aa18.05■□□□□ 0.48
PABPC1-203ENST00000517921 KIF21AQ7Z4S6 1674 aa18.03■□□□□ 0.48
PABPC1-203ENST00000517921 FANCD2Q9BXW9 1451 aa17.99■□□□□ 0.47
PABPC1-203ENST00000517921 CUX2O14529 1486 aa17.98■□□□□ 0.47
PABPC1-203ENST00000517921 SYNJ1O43426 1573 aa17.96■□□□□ 0.47
PABPC1-203ENST00000517921 BIVM-ERCC5R4GMW8 1640 aa17.96■□□□□ 0.47
PABPC1-203ENST00000517921 WRNQ14191 1432 aaPredicted RBP eCLIP17.94■□□□□ 0.46
PABPC1-203ENST00000517921 PDS5BQ9NTI5 1447 aa17.92■□□□□ 0.46
PABPC1-203ENST00000517921 TOP2BQ02880 1626 aa17.91■□□□□ 0.46
PABPC1-203ENST00000517921 CEP164Q9UPV0 1460 aa17.91■□□□□ 0.46
PABPC1-203ENST00000517921 CUX1P39880 1505 aa17.9■□□□□ 0.46
PABPC1-203ENST00000517921 DNMBPQ6XZF7 1577 aa17.85■□□□□ 0.45
PABPC1-203ENST00000517921 TRIM41Q8WV44 630 aa17.84■□□□□ 0.45
PABPC1-203ENST00000517921 URB2Q14146 1524 aaKnown RBP17.8■□□□□ 0.44
PABPC1-203ENST00000517921 TOPBP1Q92547 1522 aa17.79■□□□□ 0.44
PABPC1-203ENST00000517921 DNAJC5Q9H3Z4 198 aa17.79■□□□□ 0.44
PABPC1-203ENST00000517921 THOC2Q8NI27 1593 aaKnown RBP17.78■□□□□ 0.44
PABPC1-203ENST00000517921 MRC2Q9UBG0 1479 aa17.76■□□□□ 0.43
PABPC1-203ENST00000517921 WDR62O43379 1518 aa17.72■□□□□ 0.43
PABPC1-203ENST00000517921 FGD5Q6ZNL6 1462 aa17.72■□□□□ 0.43
PABPC1-203ENST00000517921 WDR97A6NE52 1622 aa17.68■□□□□ 0.42
PABPC1-203ENST00000517921 POLA1P09884 1462 aaPredicted RBP17.67■□□□□ 0.42
PABPC1-203ENST00000517921 SOGA1O94964 1423 aa17.62■□□□□ 0.41
PABPC1-203ENST00000517921 TARBP1Q13395 1621 aaKnown RBP17.61■□□□□ 0.41
PABPC1-203ENST00000517921 RUSC2Q8N2Y8 1516 aa17.58■□□□□ 0.41
PABPC1-203ENST00000517921 ABCA10Q8WWZ4 1543 aa17.57■□□□□ 0.4
PABPC1-203ENST00000517921 RAD54L2Q9Y4B4 1467 aa17.57■□□□□ 0.4
PABPC1-203ENST00000517921 EEA1Q15075 1411 aa17.56■□□□□ 0.4
PABPC1-203ENST00000517921 ABCA5Q8WWZ7 1642 aa17.53■□□□□ 0.4
PABPC1-203ENST00000517921 KIF27Q86VH2 1401 aa17.5■□□□□ 0.39
PABPC1-203ENST00000517921 IFT140Q96RY7 1462 aa17.5■□□□□ 0.39
PABPC1-203ENST00000517921 FAM9AQ8IZU1 332 aaPredicted RBP17.48■□□□□ 0.39
PABPC1-203ENST00000517921 PBRM1Q86U86 1689 aa17.48■□□□□ 0.39
PABPC1-203ENST00000517921 KIF21BO75037 1637 aa17.44■□□□□ 0.38
PABPC1-203ENST00000517921 EIF4G3O43432 1585 aaKnown RBP17.42■□□□□ 0.38
PABPC1-203ENST00000517921 ZNF608Q9ULD9 1512 aaPredicted RBP17.4■□□□□ 0.38
PABPC1-203ENST00000517921 CUL7Q14999 1698 aa17.39■□□□□ 0.37
PABPC1-203ENST00000517921 GAPVD1Q14C86 1478 aa17.39■□□□□ 0.37
PABPC1-203ENST00000517921 CSRNP3Q8WYN3 585 aa17.39■□□□□ 0.37
PABPC1-203ENST00000517921 ERICH3Q5RHP9 1530 aa17.37■□□□□ 0.37
PABPC1-203ENST00000517921 TDRD9Q8NDG6 1382 aaKnown RBP17.37■□□□□ 0.37
PABPC1-203ENST00000517921 PRXQ9BXM0 1461 aa17.35■□□□□ 0.37
PABPC1-203ENST00000517921 IGF1RP08069 1367 aa17.34■□□□□ 0.37
PABPC1-203ENST00000517921 AQRO60306 1485 aaKnown RBP eCLIP17.33■□□□□ 0.37
PABPC1-203ENST00000517921 GOLGA3Q08378 1498 aa17.31■□□□□ 0.36
PABPC1-203ENST00000517921 ADAMTS12P58397 1594 aa17.31■□□□□ 0.36
PABPC1-203ENST00000517921 LOC105371045A0A1W2PR82 267 aa17.3■□□□□ 0.36
PABPC1-203ENST00000517921 GRIN2BQ13224 1484 aa17.3■□□□□ 0.36
PABPC1-203ENST00000517921 OSCARQ8IYS5 282 aa17.29■□□□□ 0.36
PABPC1-203ENST00000517921 RAPGEF2Q9Y4G8 1499 aa17.29■□□□□ 0.36
PABPC1-203ENST00000517921 CARMIL1Q5VZK9 1371 aa17.26■□□□□ 0.35
PABPC1-203ENST00000517921 SNAPC4Q5SXM2 1469 aa17.23■□□□□ 0.35
PABPC1-203ENST00000517921 CTTNBP2Q8WZ74 1663 aa17.23■□□□□ 0.35
PABPC1-203ENST00000517921 EHMT2Q96KQ7 1210 aa17.22■□□□□ 0.35
PABPC1-203ENST00000517921 MAGI1Q96QZ7 1491 aaPredicted RBP17.21■□□□□ 0.35
PABPC1-203ENST00000517921 FHAD1B1AJZ9 1412 aa17.2■□□□□ 0.34
PABPC1-203ENST00000517921 TNIKQ9UKE5 1360 aa17.17■□□□□ 0.34
PABPC1-203ENST00000517921 CHD1O14646 1710 aa17.16■□□□□ 0.34
PABPC1-203ENST00000517921 SYNJ2O15056 1496 aa17.12■□□□□ 0.33
PABPC1-203ENST00000517921 UBTFP17480 764 aaKnown RBP17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms