RNA–Protein interactions for RNA: ENST00000543555.5

MSH2-206, Transcript of mutS homolog 2, humanhuman

TSL 2 BASIC

Gene MSH2, Length 3,024 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-206ENST00000543555 NISCHQ9Y2I1 1504 aa29.88■■■□□ 2.37
MSH2-206ENST00000543555 CCDC180Q9P1Z9 1646 aa25.66■■□□□ 1.7
MSH2-206ENST00000543555 ZCCHC6Q5VYS8 1495 aaKnown RBP25.23■■□□□ 1.63
MSH2-206ENST00000543555 DCAF8L2P0C7V8 631 aa25.17■■□□□ 1.62
MSH2-206ENST00000543555 ABCC9O60706 1549 aa25.02■■□□□ 1.6
MSH2-206ENST00000543555 SHROOM4Q9ULL8 1493 aa24.99■■□□□ 1.59
MSH2-206ENST00000543555 DCAF1Q9Y4B6 1507 aa24.63■■□□□ 1.53
MSH2-206ENST00000543555 SUPT5HO00267 1087 aaKnown RBP24.36■■□□□ 1.49
MSH2-206ENST00000543555 MYO15BQ96JP2 1530 aa24.07■■□□□ 1.44
MSH2-206ENST00000543555 NACADO15069 1562 aa23.99■■□□□ 1.43
MSH2-206ENST00000543555 SCRIBQ14160 1630 aa23.94■■□□□ 1.42
MSH2-206ENST00000543555 RB1CC1Q8TDY2 1594 aa23.92■■□□□ 1.42
MSH2-206ENST00000543555 PABPN1Q86U42 306 aaKnown RBP eCLIP23.75■■□□□ 1.39
MSH2-206ENST00000543555 CHIC1Q5VXU3 224 aa23.62■■□□□ 1.37
MSH2-206ENST00000543555 UNC13AQ9UPW8 1703 aa23.48■■□□□ 1.35
MSH2-206ENST00000543555 RSF1Q96T23 1441 aaPredicted RBP23.47■■□□□ 1.35
MSH2-206ENST00000543555 BICRAQ9NZM4 1560 aa23.29■■□□□ 1.32
MSH2-206ENST00000543555 CECR2Q9BXF3 1484 aa23.24■■□□□ 1.31
MSH2-206ENST00000543555 MROH2BQ7Z745 1585 aa23.16■■□□□ 1.3
MSH2-206ENST00000543555 WIZO95785 1651 aa23■■□□□ 1.27
MSH2-206ENST00000543555 BAZ1AQ9NRL2 1556 aaPredicted RBP23■■□□□ 1.27
MSH2-206ENST00000543555 SMARCA4P51532 1647 aa22.83■■□□□ 1.25
MSH2-206ENST00000543555 LOC105371045A0A1W2PR82 267 aa22.8■■□□□ 1.24
MSH2-206ENST00000543555 TRIM41Q8WV44 630 aa22.79■■□□□ 1.24
MSH2-206ENST00000543555 TOP2AP11388 1531 aaKnown RBP22.73■■□□□ 1.23
MSH2-206ENST00000543555 EIF4G1Q04637 1599 aaKnown RBP22.64■■□□□ 1.22
MSH2-206ENST00000543555 SMARCA2P51531 1590 aa22.56■■□□□ 1.2
MSH2-206ENST00000543555 CCDC88BA6NC98 1476 aa22.55■■□□□ 1.2
MSH2-206ENST00000543555 ATAD2BQ9ULI0 1458 aa22.49■■□□□ 1.19
MSH2-206ENST00000543555 DNAJC5BQ9UF47 199 aa22.49■■□□□ 1.19
MSH2-206ENST00000543555 FAM9AQ8IZU1 332 aaPredicted RBP22.48■■□□□ 1.19
MSH2-206ENST00000543555 PEG3Q9GZU2 1588 aa22.48■■□□□ 1.19
MSH2-206ENST00000543555 PCGF6Q9BYE7 350 aa22.45■■□□□ 1.18
MSH2-206ENST00000543555 CC2D2AQ9P2K1 1620 aa22.42■■□□□ 1.18
MSH2-206ENST00000543555 BAZ1BQ9UIG0 1483 aaKnown RBP22.38■■□□□ 1.17
MSH2-206ENST00000543555 ABCC8Q09428 1581 aa22.34■■□□□ 1.17
MSH2-206ENST00000543555 HRCP23327 699 aa22.31■■□□□ 1.16
MSH2-206ENST00000543555 NCAPD3P42695 1498 aa22.24■■□□□ 1.15
MSH2-206ENST00000543555 TRIM26Q12899 539 aaPredicted RBP22.21■■□□□ 1.15
MSH2-206ENST00000543555 EHMT2Q96KQ7 1210 aa22.2■■□□□ 1.15
MSH2-206ENST00000543555 HMGXB3Q12766 1538 aa22.08■■□□□ 1.12
MSH2-206ENST00000543555 WRNQ14191 1432 aaPredicted RBP eCLIP22.07■■□□□ 1.12
MSH2-206ENST00000543555 SOGA1O94964 1423 aa22.06■■□□□ 1.12
MSH2-206ENST00000543555 EEA1Q15075 1411 aa22.04■■□□□ 1.12
MSH2-206ENST00000543555 SYNJ1O43426 1573 aa21.96■■□□□ 1.11
MSH2-206ENST00000543555 RUSC2Q8N2Y8 1516 aa21.95■■□□□ 1.1
MSH2-206ENST00000543555 CSRNP3Q8WYN3 585 aa21.93■■□□□ 1.1
MSH2-206ENST00000543555 NESP48681 1621 aa21.88■■□□□ 1.09
MSH2-206ENST00000543555 TNIKQ9UKE5 1360 aa21.87■■□□□ 1.09
MSH2-206ENST00000543555 CEP162Q5TB80 1403 aa21.83■■□□□ 1.09
MSH2-206ENST00000543555 GOLGA3Q08378 1498 aa21.81■■□□□ 1.08
MSH2-206ENST00000543555 CADPSQ9ULU8 1353 aa21.78■■□□□ 1.08
MSH2-206ENST00000543555 TOP2BQ02880 1626 aa21.77■■□□□ 1.08
MSH2-206ENST00000543555 PPARGC1BQ86YN6 1023 aaKnown RBP21.77■■□□□ 1.07
MSH2-206ENST00000543555 UBTFP17480 764 aaKnown RBP21.74■■□□□ 1.07
MSH2-206ENST00000543555 CEP164Q9UPV0 1460 aa21.73■■□□□ 1.07
MSH2-206ENST00000543555 KIF21BO75037 1637 aa21.73■■□□□ 1.07
MSH2-206ENST00000543555 BIVM-ERCC5R4GMW8 1640 aa21.72■■□□□ 1.07
MSH2-206ENST00000543555 CFTRP13569 1480 aa21.72■■□□□ 1.07
MSH2-206ENST00000543555 ZEB1P37275 1124 aaPredicted RBP21.62■■□□□ 1.05
MSH2-206ENST00000543555 CUX1P39880 1505 aa21.6■■□□□ 1.05
MSH2-206ENST00000543555 FANCD2Q9BXW9 1451 aa21.56■■□□□ 1.04
MSH2-206ENST00000543555 RAPGEF2Q9Y4G8 1499 aa21.56■■□□□ 1.04
MSH2-206ENST00000543555 PRDM2Q13029 1718 aa21.54■■□□□ 1.04
MSH2-206ENST00000543555 CLIP1P30622 1438 aa21.51■■□□□ 1.03
MSH2-206ENST00000543555 LAMC3Q9Y6N6 1575 aa21.47■■□□□ 1.03
MSH2-206ENST00000543555 ERICH3Q5RHP9 1530 aa21.46■■□□□ 1.03
MSH2-206ENST00000543555 PRXQ9BXM0 1461 aa21.46■■□□□ 1.03
MSH2-206ENST00000543555 PDS5BQ9NTI5 1447 aa21.44■■□□□ 1.02
MSH2-206ENST00000543555 KIF27Q86VH2 1401 aa21.43■■□□□ 1.02
MSH2-206ENST00000543555 TTBK1Q5TCY1 1321 aaPredicted RBP21.43■■□□□ 1.02
MSH2-206ENST00000543555 VPS8Q8N3P4 1428 aa21.4■■□□□ 1.02
MSH2-206ENST00000543555 ERCC6Q03468 1493 aa21.4■■□□□ 1.02
MSH2-206ENST00000543555 KIF21AQ7Z4S6 1674 aa21.39■■□□□ 1.02
MSH2-206ENST00000543555 URB2Q14146 1524 aaKnown RBP21.31■■□□□ 1
MSH2-206ENST00000543555 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.3■■□□□ 1
MSH2-206ENST00000543555 RANGAP1P46060 587 aaPredicted RBP21.27■■□□□ 1
MSH2-206ENST00000543555 RAD54L2Q9Y4B4 1467 aa21.27■□□□□ 0.99
MSH2-206ENST00000543555 TOPBP1Q92547 1522 aa21.26■□□□□ 0.99
MSH2-206ENST00000543555 CUX2O14529 1486 aa21.26■□□□□ 0.99
MSH2-206ENST00000543555 FGD5Q6ZNL6 1462 aa21.26■□□□□ 0.99
MSH2-206ENST00000543555 CCER1Q8TC90 406 aaPredicted RBP21.26■□□□□ 0.99
MSH2-206ENST00000543555 ARAP1Q96P48 1450 aa21.22■□□□□ 0.99
MSH2-206ENST00000543555 APLP2Q06481 763 aa21.21■□□□□ 0.99
MSH2-206ENST00000543555 IGF1RP08069 1367 aa21.19■□□□□ 0.98
MSH2-206ENST00000543555 POLA1P09884 1462 aaPredicted RBP21.18■□□□□ 0.98
MSH2-206ENST00000543555 DNMBPQ6XZF7 1577 aa21.16■□□□□ 0.98
MSH2-206ENST00000543555 MRC2Q9UBG0 1479 aa21.16■□□□□ 0.98
MSH2-206ENST00000543555 TDRD9Q8NDG6 1382 aaKnown RBP21.15■□□□□ 0.98
MSH2-206ENST00000543555 CARMIL1Q5VZK9 1371 aa21.1■□□□□ 0.97
MSH2-206ENST00000543555 ARHGAP35Q9NRY4 1499 aa21.09■□□□□ 0.97
MSH2-206ENST00000543555 ABCA10Q8WWZ4 1543 aa21.05■□□□□ 0.96
MSH2-206ENST00000543555 AQRO60306 1485 aaKnown RBP eCLIP21.01■□□□□ 0.956e-6■■■■□ 25.1
MSH2-206ENST00000543555 HNRNPUL2Q1KMD3 747 aaKnown RBP21.01■□□□□ 0.95
MSH2-206ENST00000543555 THOC2Q8NI27 1593 aaKnown RBP21.01■□□□□ 0.95
MSH2-206ENST00000543555 ZNF608Q9ULD9 1512 aaPredicted RBP20.99■□□□□ 0.95
MSH2-206ENST00000543555 WDR62O43379 1518 aa20.98■□□□□ 0.95
MSH2-206ENST00000543555 KANK4Q5T7N3 995 aaPredicted RBP20.97■□□□□ 0.95
MSH2-206ENST00000543555 CUL7Q14999 1698 aa20.91■□□□□ 0.94
MSH2-206ENST00000543555 WDR97A6NE52 1622 aa20.91■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms