RNA–Protein interactions for RNA: ENST00000351193.6

NMD3-201, Transcript of NMD3 ribosome export adaptor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NMD3, Length 3,049 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NMD3-201ENST00000351193 NISCHQ9Y2I1 1504 aa15.91■□□□□ 0.14
NMD3-201ENST00000351193 SHROOM4Q9ULL8 1493 aa14.23□□□□□ -0.13
NMD3-201ENST00000351193 SUPT5HO00267 1087 aaKnown RBP14.11□□□□□ -0.15
NMD3-201ENST00000351193 HRCP23327 699 aa13.77□□□□□ -0.21
NMD3-201ENST00000351193 PCGF6Q9BYE7 350 aa13.73□□□□□ -0.21
NMD3-201ENST00000351193 MYO15BQ96JP2 1530 aa13.69□□□□□ -0.22
NMD3-201ENST00000351193 CHIC1Q5VXU3 224 aa13.66□□□□□ -0.22
NMD3-201ENST00000351193 PPARGC1BQ86YN6 1023 aaKnown RBP13.66□□□□□ -0.22
NMD3-201ENST00000351193 DCAF8L2P0C7V8 631 aa13.64□□□□□ -0.23
NMD3-201ENST00000351193 ZCCHC6Q5VYS8 1495 aaKnown RBP13.48□□□□□ -0.25
NMD3-201ENST00000351193 LOC105371045A0A1W2PR82 267 aa13.45□□□□□ -0.26
NMD3-201ENST00000351193 DCAF1Q9Y4B6 1507 aa13.22□□□□□ -0.29
NMD3-201ENST00000351193 TRIM26Q12899 539 aaPredicted RBP13.21□□□□□ -0.29
NMD3-201ENST00000351193 CCDC180Q9P1Z9 1646 aa13.2□□□□□ -0.3
NMD3-201ENST00000351193 EHMT2Q96KQ7 1210 aa13.15□□□□□ -0.3
NMD3-201ENST00000351193 FAM9AQ8IZU1 332 aaPredicted RBP13.1□□□□□ -0.31
NMD3-201ENST00000351193 TRIM41Q8WV44 630 aa12.99□□□□□ -0.33
NMD3-201ENST00000351193 ZEB1P37275 1124 aaPredicted RBP12.97□□□□□ -0.33
NMD3-201ENST00000351193 SCAF1Q9H7N4 1312 aaKnown RBP12.97□□□□□ -0.33
NMD3-201ENST00000351193 PELP1Q8IZL8 1130 aaKnown RBP12.88□□□□□ -0.35
NMD3-201ENST00000351193 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.8□□□□□ -0.36
NMD3-201ENST00000351193 RSF1Q96T23 1441 aaPredicted RBP12.79□□□□□ -0.36
NMD3-201ENST00000351193 ABCC9O60706 1549 aa12.78□□□□□ -0.36
NMD3-201ENST00000351193 TTBK1Q5TCY1 1321 aaPredicted RBP12.78□□□□□ -0.36
NMD3-201ENST00000351193 SCRIBQ14160 1630 aa12.75□□□□□ -0.37
NMD3-201ENST00000351193 CCER1Q8TC90 406 aaPredicted RBP12.75□□□□□ -0.37
NMD3-201ENST00000351193 RB1CC1Q8TDY2 1594 aa12.74□□□□□ -0.37
NMD3-201ENST00000351193 NEUROD1Q13562 356 aa12.71□□□□□ -0.37
NMD3-201ENST00000351193 ACIN1Q9UKV3 1341 aaKnown RBP12.69□□□□□ -0.38
NMD3-201ENST00000351193 GTF3C3Q9Y5Q9 886 aa12.64□□□□□ -0.39
NMD3-201ENST00000351193 DIEXFQ68CQ4 756 aaKnown RBP12.62□□□□□ -0.39
NMD3-201ENST00000351193 CENPBP07199 599 aaPredicted RBP12.56□□□□□ -0.4
NMD3-201ENST00000351193 CECR2Q9BXF3 1484 aa12.55□□□□□ -0.4
NMD3-201ENST00000351193 YTHDC1Q96MU7 727 aaKnown RBP12.54□□□□□ -0.4
NMD3-201ENST00000351193 MROH2BQ7Z745 1585 aa12.48□□□□□ -0.41
NMD3-201ENST00000351193 WIZO95785 1651 aa12.45□□□□□ -0.42
NMD3-201ENST00000351193 UBTFP17480 764 aaKnown RBP12.39□□□□□ -0.43
NMD3-201ENST00000351193 ZNF316A6NFI3 1004 aaPredicted RBP12.39□□□□□ -0.43
NMD3-201ENST00000351193 ABCC8Q09428 1581 aa12.36□□□□□ -0.43
NMD3-201ENST00000351193 HNRNPUL2Q1KMD3 747 aaKnown RBP12.36□□□□□ -0.43
NMD3-201ENST00000351193 CEP162Q5TB80 1403 aa12.35□□□□□ -0.43
NMD3-201ENST00000351193 CCDC88BA6NC98 1476 aa12.34□□□□□ -0.43
NMD3-201ENST00000351193 MIER1Q8N108 512 aa12.33□□□□□ -0.44
NMD3-201ENST00000351193 SOGA1O94964 1423 aa12.31□□□□□ -0.44
NMD3-201ENST00000351193 RANGAP1P46060 587 aaPredicted RBP12.29□□□□□ -0.44
NMD3-201ENST00000351193 MYT1Q01538 1121 aa12.27□□□□□ -0.45
NMD3-201ENST00000351193 WRNQ14191 1432 aaPredicted RBP eCLIP12.26□□□□□ -0.45
NMD3-201ENST00000351193 CSRNP3Q8WYN3 585 aa12.26□□□□□ -0.45
NMD3-201ENST00000351193 RUSC2Q8N2Y8 1516 aa12.25□□□□□ -0.45
NMD3-201ENST00000351193 BAZ1AQ9NRL2 1556 aaPredicted RBP12.25□□□□□ -0.45
NMD3-201ENST00000351193 TNIKQ9UKE5 1360 aa12.23□□□□□ -0.45
NMD3-201ENST00000351193 EIF4G1Q04637 1599 aaKnown RBP12.22□□□□□ -0.45
NMD3-201ENST00000351193 NACADO15069 1562 aa12.21□□□□□ -0.45
NMD3-201ENST00000351193 APLP2Q06481 763 aa12.15□□□□□ -0.46
NMD3-201ENST00000351193 TOP2AP11388 1531 aaKnown RBP12.12□□□□□ -0.47
NMD3-201ENST00000351193 GOLGA3Q08378 1498 aa12.11□□□□□ -0.47
NMD3-201ENST00000351193 SMARCA2P51531 1590 aa12.11□□□□□ -0.47
NMD3-201ENST00000351193 CLIP1P30622 1438 aa12.06□□□□□ -0.48
NMD3-201ENST00000351193 EEA1Q15075 1411 aa12.06□□□□□ -0.48
NMD3-201ENST00000351193 SMARCA4P51532 1647 aa12.05□□□□□ -0.48
NMD3-201ENST00000351193 PABPN1Q86U42 306 aaKnown RBP eCLIP12.04□□□□□ -0.48
NMD3-201ENST00000351193 SUPT16HQ9Y5B9 1047 aaKnown RBP12.03□□□□□ -0.48
NMD3-201ENST00000351193 CEP164Q9UPV0 1460 aa11.99□□□□□ -0.49
NMD3-201ENST00000351193 ITGAEP38570 1179 aa11.99□□□□□ -0.49
NMD3-201ENST00000351193 VPS8Q8N3P4 1428 aa11.98□□□□□ -0.49
NMD3-201ENST00000351193 BCANQ96GW7 911 aa11.97□□□□□ -0.49
NMD3-201ENST00000351193 RAPGEF2Q9Y4G8 1499 aa11.95□□□□□ -0.5
NMD3-201ENST00000351193 SYNJ1O43426 1573 aa11.94□□□□□ -0.5
NMD3-201ENST00000351193 KCNH8Q96L42 1107 aa11.94□□□□□ -0.5
NMD3-201ENST00000351193 DHX57Q6P158 1386 aaKnown RBP11.93□□□□□ -0.5
NMD3-201ENST00000351193 KANK4Q5T7N3 995 aaPredicted RBP11.92□□□□□ -0.5
NMD3-201ENST00000351193 TSHZ2Q9NRE2 1034 aa11.92□□□□□ -0.5
NMD3-201ENST00000351193 KIF21BO75037 1637 aa11.89□□□□□ -0.51
NMD3-201ENST00000351193 UNC13AQ9UPW8 1703 aa11.85□□□□□ -0.51
NMD3-201ENST00000351193 CLSPNQ9HAW4 1339 aa11.83□□□□□ -0.52
NMD3-201ENST00000351193 FKBP8Q14318 412 aa11.82□□□□□ -0.52
NMD3-201ENST00000351193 ANP32EQ9BTT0 268 aa11.82□□□□□ -0.52
NMD3-201ENST00000351193 BAZ1BQ9UIG0 1483 aaKnown RBP11.82□□□□□ -0.52
NMD3-201ENST00000351193 DDX10Q13206 875 aaKnown RBP11.81□□□□□ -0.52
NMD3-201ENST00000351193 HIRIP3Q9BW71 556 aaPredicted RBP11.81□□□□□ -0.52
NMD3-201ENST00000351193 ARAP1Q96P48 1450 aa11.77□□□□□ -0.53
NMD3-201ENST00000351193 TRIM52Q96A61 297 aa11.76□□□□□ -0.53
NMD3-201ENST00000351193 SIN3AQ96ST3 1273 aa11.76□□□□□ -0.53
NMD3-201ENST00000351193 CCNB3Q8WWL7 1395 aa11.74□□□□□ -0.53
NMD3-201ENST00000351193 ATP1B4Q9UN42 357 aaPredicted RBP11.72□□□□□ -0.53
NMD3-201ENST00000351193 RAB3GAP2Q9H2M9 1393 aa11.72□□□□□ -0.53
NMD3-201ENST00000351193 NEFLP07196 543 aa11.71□□□□□ -0.53
NMD3-201ENST00000351193 FAM50AQ14320 339 aaKnown RBP11.71□□□□□ -0.53
NMD3-201ENST00000351193 ATAD2BQ9ULI0 1458 aa11.71□□□□□ -0.53
NMD3-201ENST00000351193 RRBP1Q9P2E9 1410 aaKnown RBP11.7□□□□□ -0.54
NMD3-201ENST00000351193 BICRAQ9NZM4 1560 aa11.69□□□□□ -0.54
NMD3-201ENST00000351193 BCL11AQ9H165 835 aa11.69□□□□□ -0.54
NMD3-201ENST00000351193 RBM19Q9Y4C8 960 aaKnown RBP11.67□□□□□ -0.54
NMD3-201ENST00000351193 TOP2BQ02880 1626 aa11.67□□□□□ -0.54
NMD3-201ENST00000351193 PRXQ9BXM0 1461 aa11.67□□□□□ -0.54
NMD3-201ENST00000351193 P3H3Q8IVL6 736 aa11.66□□□□□ -0.54
NMD3-201ENST00000351193 PEG3Q9GZU2 1588 aa11.66□□□□□ -0.54
NMD3-201ENST00000351193 WDR97A6NE52 1622 aa11.64□□□□□ -0.55
NMD3-201ENST00000351193 IRX6P78412 446 aaPredicted RBP11.63□□□□□ -0.55
NMD3-201ENST00000351193 MAPKBP1O60336 1514 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms