RNA–Protein interactions for RNA: ENST00000610907.1

PABPC1-224, Transcript of poly(A) binding protein cytoplasmic 1, humanhuman

TSL 1 (best) BASIC

Gene PABPC1, Length 1,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PABPC1-224ENST00000610907 NISCHQ9Y2I1 1504 aa22.29■■□□□ 1.16
PABPC1-224ENST00000610907 CCDC180Q9P1Z9 1646 aa19.17■□□□□ 0.66
PABPC1-224ENST00000610907 ZCCHC6Q5VYS8 1495 aaKnown RBP18.82■□□□□ 0.6
PABPC1-224ENST00000610907 SHROOM4Q9ULL8 1493 aa18.5■□□□□ 0.55
PABPC1-224ENST00000610907 DCAF1Q9Y4B6 1507 aa18.46■□□□□ 0.55
PABPC1-224ENST00000610907 DCAF8L2P0C7V8 631 aa18.23■□□□□ 0.51
PABPC1-224ENST00000610907 SUPT5HO00267 1087 aaKnown RBP18.11■□□□□ 0.49
PABPC1-224ENST00000610907 MYO15BQ96JP2 1530 aa18.06■□□□□ 0.48
PABPC1-224ENST00000610907 NACADO15069 1562 aa17.76■□□□□ 0.43
PABPC1-224ENST00000610907 ABCC9O60706 1549 aa17.69■□□□□ 0.42
PABPC1-224ENST00000610907 SCRIBQ14160 1630 aa17.66■□□□□ 0.42
PABPC1-224ENST00000610907 CHIC1Q5VXU3 224 aa17.65■□□□□ 0.42
PABPC1-224ENST00000610907 RSF1Q96T23 1441 aaPredicted RBP17.5■□□□□ 0.39
PABPC1-224ENST00000610907 RB1CC1Q8TDY2 1594 aa17.46■□□□□ 0.39
PABPC1-224ENST00000610907 CECR2Q9BXF3 1484 aa17.25■□□□□ 0.35
PABPC1-224ENST00000610907 MROH2BQ7Z745 1585 aa17.22■□□□□ 0.35
PABPC1-224ENST00000610907 BAZ1AQ9NRL2 1556 aaPredicted RBP17.17■□□□□ 0.34
PABPC1-224ENST00000610907 WIZO95785 1651 aa17.09■□□□□ 0.33
PABPC1-224ENST00000610907 UNC13AQ9UPW8 1703 aa17.07■□□□□ 0.32
PABPC1-224ENST00000610907 TRIM41Q8WV44 630 aa17.03■□□□□ 0.32
PABPC1-224ENST00000610907 SMARCA4P51532 1647 aa17■□□□□ 0.31
PABPC1-224ENST00000610907 LOC105371045A0A1W2PR82 267 aa16.97■□□□□ 0.31
PABPC1-224ENST00000610907 TOP2AP11388 1531 aaKnown RBP16.95■□□□□ 0.3
PABPC1-224ENST00000610907 BICRAQ9NZM4 1560 aa16.9■□□□□ 0.3
PABPC1-224ENST00000610907 EIF4G1Q04637 1599 aaKnown RBP16.86■□□□□ 0.29
PABPC1-224ENST00000610907 SMARCA2P51531 1590 aa16.8■□□□□ 0.28
PABPC1-224ENST00000610907 PEG3Q9GZU2 1588 aa16.8■□□□□ 0.28
PABPC1-224ENST00000610907 CCDC88BA6NC98 1476 aa16.79■□□□□ 0.28
PABPC1-224ENST00000610907 PCGF6Q9BYE7 350 aa16.77■□□□□ 0.27
PABPC1-224ENST00000610907 HRCP23327 699 aa16.75■□□□□ 0.27
PABPC1-224ENST00000610907 PABPN1Q86U42 306 aaKnown RBP eCLIP16.75■□□□□ 0.27
PABPC1-224ENST00000610907 TRIM26Q12899 539 aaPredicted RBP16.68■□□□□ 0.26
PABPC1-224ENST00000610907 FAM9AQ8IZU1 332 aaPredicted RBP16.68■□□□□ 0.26
PABPC1-224ENST00000610907 ATAD2BQ9ULI0 1458 aa16.61■□□□□ 0.25
PABPC1-224ENST00000610907 ABCC8Q09428 1581 aa16.57■□□□□ 0.24
PABPC1-224ENST00000610907 EEA1Q15075 1411 aa16.55■□□□□ 0.24
PABPC1-224ENST00000610907 BAZ1BQ9UIG0 1483 aaKnown RBP16.54■□□□□ 0.24
PABPC1-224ENST00000610907 WRNQ14191 1432 aaPredicted RBP eCLIP16.46■□□□□ 0.22
PABPC1-224ENST00000610907 NCAPD3P42695 1498 aa16.4■□□□□ 0.22
PABPC1-224ENST00000610907 CSRNP3Q8WYN3 585 aa16.4■□□□□ 0.22
PABPC1-224ENST00000610907 HMGXB3Q12766 1538 aa16.4■□□□□ 0.22
PABPC1-224ENST00000610907 SOGA1O94964 1423 aa16.4■□□□□ 0.22
PABPC1-224ENST00000610907 TNIKQ9UKE5 1360 aa16.39■□□□□ 0.21
PABPC1-224ENST00000610907 EHMT2Q96KQ7 1210 aa16.38■□□□□ 0.21
PABPC1-224ENST00000610907 ZEB1P37275 1124 aaPredicted RBP16.35■□□□□ 0.21
PABPC1-224ENST00000610907 SYNJ1O43426 1573 aa16.32■□□□□ 0.2
PABPC1-224ENST00000610907 GOLGA3Q08378 1498 aa16.3■□□□□ 0.2
PABPC1-224ENST00000610907 RUSC2Q8N2Y8 1516 aa16.29■□□□□ 0.2
PABPC1-224ENST00000610907 CEP162Q5TB80 1403 aa16.29■□□□□ 0.2
PABPC1-224ENST00000610907 AEBP2Q6ZN18 517 aaPredicted RBP16.27■□□□□ 0.2
PABPC1-224ENST00000610907 CEP164Q9UPV0 1460 aa16.26■□□□□ 0.19
PABPC1-224ENST00000610907 DNAJC5BQ9UF47 199 aa16.26■□□□□ 0.19
PABPC1-224ENST00000610907 KIF21BO75037 1637 aa16.25■□□□□ 0.19
PABPC1-224ENST00000610907 TOP2BQ02880 1626 aa16.25■□□□□ 0.19
PABPC1-224ENST00000610907 BIVM-ERCC5R4GMW8 1640 aa16.22■□□□□ 0.19
PABPC1-224ENST00000610907 UBTFP17480 764 aaKnown RBP16.21■□□□□ 0.19
PABPC1-224ENST00000610907 PPARGC1BQ86YN6 1023 aaKnown RBP16.19■□□□□ 0.18
PABPC1-224ENST00000610907 CFTRP13569 1480 aa16.17■□□□□ 0.18
PABPC1-224ENST00000610907 PRDM2Q13029 1718 aa16.07■□□□□ 0.16
PABPC1-224ENST00000610907 CUX1P39880 1505 aa16.06■□□□□ 0.16
PABPC1-224ENST00000610907 ERICH3Q5RHP9 1530 aa16.06■□□□□ 0.16
PABPC1-224ENST00000610907 CLIP1P30622 1438 aa16.06■□□□□ 0.16
PABPC1-224ENST00000610907 RAPGEF2Q9Y4G8 1499 aa16.04■□□□□ 0.16
PABPC1-224ENST00000610907 PRXQ9BXM0 1461 aa16.03■□□□□ 0.16
PABPC1-224ENST00000610907 CADPSQ9ULU8 1353 aa16.02■□□□□ 0.15
PABPC1-224ENST00000610907 KIF27Q86VH2 1401 aa16.01■□□□□ 0.15
PABPC1-224ENST00000610907 VPS8Q8N3P4 1428 aa16■□□□□ 0.15
PABPC1-224ENST00000610907 CC2D2AQ9P2K1 1620 aa15.97■□□□□ 0.15
PABPC1-224ENST00000610907 CCER1Q8TC90 406 aaPredicted RBP15.92■□□□□ 0.14
PABPC1-224ENST00000610907 APLP2Q06481 763 aa15.9■□□□□ 0.14
PABPC1-224ENST00000610907 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.87■□□□□ 0.13
PABPC1-224ENST00000610907 TTBK1Q5TCY1 1321 aaPredicted RBP15.82■□□□□ 0.12
PABPC1-224ENST00000610907 IGF1RP08069 1367 aa15.82■□□□□ 0.12
PABPC1-224ENST00000610907 CUX2O14529 1486 aa15.81■□□□□ 0.12
PABPC1-224ENST00000610907 FANCD2Q9BXW9 1451 aa15.81■□□□□ 0.12
PABPC1-224ENST00000610907 FGD5Q6ZNL6 1462 aa15.81■□□□□ 0.12
PABPC1-224ENST00000610907 ARAP1Q96P48 1450 aa15.8■□□□□ 0.12
PABPC1-224ENST00000610907 DNMBPQ6XZF7 1577 aa15.77■□□□□ 0.11
PABPC1-224ENST00000610907 CARMIL1Q5VZK9 1371 aa15.74■□□□□ 0.11
PABPC1-224ENST00000610907 LAMC3Q9Y6N6 1575 aa15.73■□□□□ 0.11
PABPC1-224ENST00000610907 RANGAP1P46060 587 aaPredicted RBP15.72■□□□□ 0.11
PABPC1-224ENST00000610907 ARHGAP35Q9NRY4 1499 aa15.72■□□□□ 0.11
PABPC1-224ENST00000610907 ABCA10Q8WWZ4 1543 aa15.7■□□□□ 0.1
PABPC1-224ENST00000610907 TOPBP1Q92547 1522 aa15.7■□□□□ 0.1
PABPC1-224ENST00000610907 MAP3K1Q13233 1512 aa15.67■□□□□ 0.1
PABPC1-224ENST00000610907 POLA1P09884 1462 aaPredicted RBP15.66■□□□□ 0.1
PABPC1-224ENST00000610907 HNRNPUL2Q1KMD3 747 aaKnown RBP15.65■□□□□ 0.1
PABPC1-224ENST00000610907 NESP48681 1621 aa15.64■□□□□ 0.09
PABPC1-224ENST00000610907 PDS5BQ9NTI5 1447 aa15.62■□□□□ 0.09
PABPC1-224ENST00000610907 RRBP1Q9P2E9 1410 aaKnown RBP15.62■□□□□ 0.09
PABPC1-224ENST00000610907 CUL7Q14999 1698 aa15.62■□□□□ 0.09
PABPC1-224ENST00000610907 KANK4Q5T7N3 995 aaPredicted RBP15.6■□□□□ 0.09
PABPC1-224ENST00000610907 RAD54L2Q9Y4B4 1467 aa15.6■□□□□ 0.09
PABPC1-224ENST00000610907 CLSPNQ9HAW4 1339 aa15.6■□□□□ 0.09
PABPC1-224ENST00000610907 FHAD1B1AJZ9 1412 aa15.59■□□□□ 0.09
PABPC1-224ENST00000610907 URB2Q14146 1524 aaKnown RBP15.57■□□□□ 0.08
PABPC1-224ENST00000610907 WDR97A6NE52 1622 aa15.56■□□□□ 0.08
PABPC1-224ENST00000610907 EFCAB5A4FU69 1503 aa15.55■□□□□ 0.08
PABPC1-224ENST00000610907 TIAM1Q13009 1591 aa15.54■□□□□ 0.08
PABPC1-224ENST00000610907 CCNB3Q8WWL7 1395 aa15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms