RNA–Protein interactions for RNA: ENST00000519004.5

PABPC1-208, Transcript of poly(A) binding protein cytoplasmic 1, humanhuman

TSL 2 BASIC

Gene PABPC1, Length 2,401 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PABPC1-208ENST00000519004 NISCHQ9Y2I1 1504 aa24.3■■□□□ 1.48
PABPC1-208ENST00000519004 HRCP23327 699 aa23.25■■□□□ 1.31
PABPC1-208ENST00000519004 PELP1Q8IZL8 1130 aaKnown RBP23.17■■□□□ 1.3
PABPC1-208ENST00000519004 PPARGC1BQ86YN6 1023 aaKnown RBP22.69■■□□□ 1.22
PABPC1-208ENST00000519004 PCGF6Q9BYE7 350 aa22.42■■□□□ 1.18
PABPC1-208ENST00000519004 MYT1Q01538 1121 aa22.41■■□□□ 1.18
PABPC1-208ENST00000519004 SCAF1Q9H7N4 1312 aaKnown RBP22.27■■□□□ 1.16
PABPC1-208ENST00000519004 MYO15BQ96JP2 1530 aa22.23■■□□□ 1.15
PABPC1-208ENST00000519004 SUPT5HO00267 1087 aaKnown RBP21.89■■□□□ 1.09
PABPC1-208ENST00000519004 DCAF1Q9Y4B6 1507 aa21.87■■□□□ 1.09
PABPC1-208ENST00000519004 CHIC1Q5VXU3 224 aa21.84■■□□□ 1.09
PABPC1-208ENST00000519004 SHROOM4Q9ULL8 1493 aa21.8■■□□□ 1.08
PABPC1-208ENST00000519004 CCDC180Q9P1Z9 1646 aa21.71■■□□□ 1.07
PABPC1-208ENST00000519004 TRIM26Q12899 539 aaPredicted RBP21.63■■□□□ 1.05
PABPC1-208ENST00000519004 ZEB1P37275 1124 aaPredicted RBP21.63■■□□□ 1.05
PABPC1-208ENST00000519004 ACIN1Q9UKV3 1341 aaKnown RBP21.56■■□□□ 1.04
PABPC1-208ENST00000519004 NEUROD1Q13562 356 aa21.46■■□□□ 1.03
PABPC1-208ENST00000519004 GTF3C3Q9Y5Q9 886 aa21.36■■□□□ 1.01
PABPC1-208ENST00000519004 LOC105371045A0A1W2PR82 267 aa21.32■■□□□ 1
PABPC1-208ENST00000519004 TTBK1Q5TCY1 1321 aaPredicted RBP21.21■□□□□ 0.99
PABPC1-208ENST00000519004 CENPBP07199 599 aaPredicted RBP21.14■□□□□ 0.97
PABPC1-208ENST00000519004 BCL11AQ9H165 835 aa20.91■□□□□ 0.94
PABPC1-208ENST00000519004 DIEXFQ68CQ4 756 aaKnown RBP20.87■□□□□ 0.93
PABPC1-208ENST00000519004 ZCCHC6Q5VYS8 1495 aaKnown RBP20.81■□□□□ 0.92
PABPC1-208ENST00000519004 FAM9AQ8IZU1 332 aaPredicted RBP20.76■□□□□ 0.91
PABPC1-208ENST00000519004 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.61■□□□□ 0.89
PABPC1-208ENST00000519004 ANP32EQ9BTT0 268 aa20.6■□□□□ 0.89
PABPC1-208ENST00000519004 TRIM41Q8WV44 630 aa20.58■□□□□ 0.88
PABPC1-208ENST00000519004 CCER1Q8TC90 406 aaPredicted RBP20.57■□□□□ 0.88
PABPC1-208ENST00000519004 YTHDC1Q96MU7 727 aaKnown RBP20.52■□□□□ 0.87
PABPC1-208ENST00000519004 PRKCSHP14314 528 aaPredicted RBP20.46■□□□□ 0.87
PABPC1-208ENST00000519004 CSRNP3Q8WYN3 585 aa20.38■□□□□ 0.85
PABPC1-208ENST00000519004 ZNF316A6NFI3 1004 aaPredicted RBP20.37■□□□□ 0.85
PABPC1-208ENST00000519004 TSHZ2Q9NRE2 1034 aa20.32■□□□□ 0.84
PABPC1-208ENST00000519004 MIER1Q8N108 512 aa20.3■□□□□ 0.84
PABPC1-208ENST00000519004 SUPT16HQ9Y5B9 1047 aaKnown RBP20.25■□□□□ 0.83
PABPC1-208ENST00000519004 CLSPNQ9HAW4 1339 aa20.23■□□□□ 0.83
PABPC1-208ENST00000519004 EHMT2Q96KQ7 1210 aa20.1■□□□□ 0.81
PABPC1-208ENST00000519004 ERICH6Q7L0X2 663 aa19.95■□□□□ 0.78
PABPC1-208ENST00000519004 DCAF8L2P0C7V8 631 aa19.93■□□□□ 0.78
PABPC1-208ENST00000519004 ABCC9O60706 1549 aa19.88■□□□□ 0.77
PABPC1-208ENST00000519004 WRNQ14191 1432 aaPredicted RBP eCLIP19.82■□□□□ 0.76
PABPC1-208ENST00000519004 APLP2Q06481 763 aa19.8■□□□□ 0.76
PABPC1-208ENST00000519004 RB1CC1Q8TDY2 1594 aa19.78■□□□□ 0.76
PABPC1-208ENST00000519004 RBM19Q9Y4C8 960 aaKnown RBP19.76■□□□□ 0.75
PABPC1-208ENST00000519004 RSF1Q96T23 1441 aaPredicted RBP19.75■□□□□ 0.75
PABPC1-208ENST00000519004 MSH5O43196 834 aa19.68■□□□□ 0.74
PABPC1-208ENST00000519004 BCANQ96GW7 911 aa19.65■□□□□ 0.74
PABPC1-208ENST00000519004 FKBP8Q14318 412 aa19.55■□□□□ 0.72
PABPC1-208ENST00000519004 CEP162Q5TB80 1403 aa19.55■□□□□ 0.72
PABPC1-208ENST00000519004 ANO8Q9HCE9 1232 aaPredicted RBP19.54■□□□□ 0.72
PABPC1-208ENST00000519004 FANCIQ9NVI1 1328 aa19.47■□□□□ 0.71
PABPC1-208ENST00000519004 MYT1LQ9UL68 1186 aa19.46■□□□□ 0.71
PABPC1-208ENST00000519004 HNRNPUL2Q1KMD3 747 aaKnown RBP19.45■□□□□ 0.7
PABPC1-208ENST00000519004 DEKP35659 375 aaKnown RBP19.43■□□□□ 0.7
PABPC1-208ENST00000519004 KCNH8Q96L42 1107 aa19.41■□□□□ 0.7
PABPC1-208ENST00000519004 TNIKQ9UKE5 1360 aa19.38■□□□□ 0.69
PABPC1-208ENST00000519004 ITGAEP38570 1179 aa19.37■□□□□ 0.69
PABPC1-208ENST00000519004 NEFLP07196 543 aa19.32■□□□□ 0.68
PABPC1-208ENST00000519004 SALL2Q9Y467 1007 aaPredicted RBP19.31■□□□□ 0.68
PABPC1-208ENST00000519004 EIF4G1Q04637 1599 aaKnown RBP19.28■□□□□ 0.68
PABPC1-208ENST00000519004 ERICH6BQ5W0A0 696 aa19.26■□□□□ 0.67
PABPC1-208ENST00000519004 DHX57Q6P158 1386 aaKnown RBP19.24■□□□□ 0.67
PABPC1-208ENST00000519004 UBE2Q2Q8WVN8 375 aa19.19■□□□□ 0.66
PABPC1-208ENST00000519004 ABCC8Q09428 1581 aa19.17■□□□□ 0.66
PABPC1-208ENST00000519004 CCDC88BA6NC98 1476 aa19.15■□□□□ 0.66
PABPC1-208ENST00000519004 CCDC136Q96JN2 1154 aa19.15■□□□□ 0.66
PABPC1-208ENST00000519004 CDK11AQ9UQ88 783 aaPredicted RBP19.14■□□□□ 0.65
PABPC1-208ENST00000519004 SCRIBQ14160 1630 aa19.13■□□□□ 0.65
PABPC1-208ENST00000519004 SOGA1O94964 1423 aa19.11■□□□□ 0.65
PABPC1-208ENST00000519004 UBTFP17480 764 aaKnown RBP19.08■□□□□ 0.64
PABPC1-208ENST00000519004 GOLGA3Q08378 1498 aa19.05■□□□□ 0.64
PABPC1-208ENST00000519004 TRIM52Q96A61 297 aa19.04■□□□□ 0.64
PABPC1-208ENST00000519004 MROH2BQ7Z745 1585 aa19.03■□□□□ 0.64
PABPC1-208ENST00000519004 EEA1Q15075 1411 aa19.03■□□□□ 0.64
PABPC1-208ENST00000519004 NBR1Q14596 966 aa19.01■□□□□ 0.63
PABPC1-208ENST00000519004 WIZO95785 1651 aa19.01■□□□□ 0.63
PABPC1-208ENST00000519004 IL27Q8NEV9 243 aa19.01■□□□□ 0.63
PABPC1-208ENST00000519004 CECR2Q9BXF3 1484 aa19■□□□□ 0.63
PABPC1-208ENST00000519004 NACADO15069 1562 aa18.99■□□□□ 0.63
PABPC1-208ENST00000519004 NOP58Q9Y2X3 529 aaKnown RBP18.99■□□□□ 0.63
PABPC1-208ENST00000519004 RUSC2Q8N2Y8 1516 aa18.99■□□□□ 0.63
PABPC1-208ENST00000519004 VPS8Q8N3P4 1428 aa18.97■□□□□ 0.63
PABPC1-208ENST00000519004 CLIP1P30622 1438 aa18.97■□□□□ 0.63
PABPC1-208ENST00000519004 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.96■□□□□ 0.63
PABPC1-208ENST00000519004 CCER2I3L3R5 266 aa18.95■□□□□ 0.62
PABPC1-208ENST00000519004 DDX10Q13206 875 aaKnown RBP18.95■□□□□ 0.62
PABPC1-208ENST00000519004 PAK3O75914 559 aaPredicted RBP18.94■□□□□ 0.62
PABPC1-208ENST00000519004 BAZ1AQ9NRL2 1556 aaPredicted RBP18.92■□□□□ 0.62
PABPC1-208ENST00000519004 PPP1R15AO75807 674 aaPredicted RBP18.91■□□□□ 0.62
PABPC1-208ENST00000519004 RTN4Q9NQC3 1192 aaKnown RBP18.9■□□□□ 0.62
PABPC1-208ENST00000519004 IRX6P78412 446 aaPredicted RBP18.9■□□□□ 0.62
PABPC1-208ENST00000519004 CUX2O14529 1486 aa18.84■□□□□ 0.61
PABPC1-208ENST00000519004 PPP4R2Q9NY27 417 aa18.82■□□□□ 0.6
PABPC1-208ENST00000519004 RTL5Q5HYW3 569 aaPredicted RBP18.81■□□□□ 0.6
PABPC1-208ENST00000519004 ANP32CO43423 234 aa18.8■□□□□ 0.6
PABPC1-208ENST00000519004 CEP164Q9UPV0 1460 aa18.79■□□□□ 0.6
PABPC1-208ENST00000519004 KIF21BO75037 1637 aa18.79■□□□□ 0.6
PABPC1-208ENST00000519004 MAPKBP1O60336 1514 aa18.77■□□□□ 0.6
PABPC1-208ENST00000519004 WDR97A6NE52 1622 aa18.77■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms