RNA–Protein interactions for RNA: ENST00000507302.6

SNF8-205, Transcript of SNF8, ESCRT-II complex subunit, humanhuman

TSL 3

Gene SNF8, Length 742 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNF8-205ENST00000507302 NISCHQ9Y2I1 1504 aa42.23■■■■■ 4.35
SNF8-205ENST00000507302 ABCC9O60706 1549 aa38.33■■■■□ 3.73
SNF8-205ENST00000507302 CCDC180Q9P1Z9 1646 aa38.14■■■■□ 3.7
SNF8-205ENST00000507302 RB1CC1Q8TDY2 1594 aa36.41■■■■□ 3.42
SNF8-205ENST00000507302 DNAJC5BQ9UF47 199 aa36.38■■■■□ 3.41
SNF8-205ENST00000507302 NACADO15069 1562 aa36.11■■■■□ 3.37
SNF8-205ENST00000507302 UNC13AQ9UPW8 1703 aa35.66■■■■□ 3.3
SNF8-205ENST00000507302 MYO15BQ96JP2 1530 aa35.6■■■■□ 3.29
SNF8-205ENST00000507302 PABPN1Q86U42 306 aaKnown RBP eCLIP35.55■■■■□ 3.28
SNF8-205ENST00000507302 DCAF8L2P0C7V8 631 aa35.47■■■■□ 3.27
SNF8-205ENST00000507302 BICRAQ9NZM4 1560 aa35.45■■■■□ 3.27
SNF8-205ENST00000507302 SHROOM4Q9ULL8 1493 aa34.98■■■■□ 3.19
SNF8-205ENST00000507302 DCAF1Q9Y4B6 1507 aa34.96■■■■□ 3.19
SNF8-205ENST00000507302 ZCCHC6Q5VYS8 1495 aaKnown RBP34.93■■■■□ 3.18
SNF8-205ENST00000507302 CC2D2AQ9P2K1 1620 aa34.7■■■■□ 3.15
SNF8-205ENST00000507302 CECR2Q9BXF3 1484 aa34.62■■■■□ 3.13
SNF8-205ENST00000507302 SCRIBQ14160 1630 aa34.55■■■■□ 3.12
SNF8-205ENST00000507302 EIF4G1Q04637 1599 aaKnown RBP34.54■■■■□ 3.12
SNF8-205ENST00000507302 DNAJC5Q9H3Z4 198 aa33.72■■■□□ 2.99
SNF8-205ENST00000507302 NCAPD3P42695 1498 aa33.36■■■□□ 2.93
SNF8-205ENST00000507302 CUX2O14529 1486 aa33.32■■■□□ 2.92
SNF8-205ENST00000507302 ATAD2BQ9ULI0 1458 aa33.15■■■□□ 2.9
SNF8-205ENST00000507302 HMGXB3Q12766 1538 aa33.08■■■□□ 2.89
SNF8-205ENST00000507302 ERCC6Q03468 1493 aa33.08■■■□□ 2.89
SNF8-205ENST00000507302 SMARCA2P51531 1590 aa33.04■■■□□ 2.88
SNF8-205ENST00000507302 SMARCA4P51532 1647 aa33.02■■■□□ 2.88
SNF8-205ENST00000507302 NESP48681 1621 aa32.85■■■□□ 2.85
SNF8-205ENST00000507302 PEG3Q9GZU2 1588 aa32.82■■■□□ 2.84
SNF8-205ENST00000507302 BAZ1AQ9NRL2 1556 aaPredicted RBP32.79■■■□□ 2.84
SNF8-205ENST00000507302 BAZ1BQ9UIG0 1483 aaKnown RBP32.74■■■□□ 2.83
SNF8-205ENST00000507302 THOC2Q8NI27 1593 aaKnown RBP32.7■■■□□ 2.83
SNF8-205ENST00000507302 LAMC3Q9Y6N6 1575 aa32.65■■■□□ 2.82
SNF8-205ENST00000507302 MROH2BQ7Z745 1585 aa32.5■■■□□ 2.79
SNF8-205ENST00000507302 KIF21AQ7Z4S6 1674 aa32.47■■■□□ 2.79
SNF8-205ENST00000507302 PDS5BQ9NTI5 1447 aa32.4■■■□□ 2.78
SNF8-205ENST00000507302 CADPSQ9ULU8 1353 aa32.25■■■□□ 2.75
SNF8-205ENST00000507302 WDR62O43379 1518 aa32.16■■■□□ 2.74
SNF8-205ENST00000507302 MRC2Q9UBG0 1479 aa32.16■■■□□ 2.74
SNF8-205ENST00000507302 WIZO95785 1651 aa32.08■■■□□ 2.73
SNF8-205ENST00000507302 CEP164Q9UPV0 1460 aa31.92■■■□□ 2.7
SNF8-205ENST00000507302 FANCD2Q9BXW9 1451 aa31.86■■■□□ 2.69
SNF8-205ENST00000507302 CFTRP13569 1480 aa31.85■■■□□ 2.69
SNF8-205ENST00000507302 TRIM41Q8WV44 630 aa31.85■■■□□ 2.69
SNF8-205ENST00000507302 RSF1Q96T23 1441 aaPredicted RBP31.68■■■□□ 2.66
SNF8-205ENST00000507302 TOP2AP11388 1531 aaKnown RBP31.68■■■□□ 2.66
SNF8-205ENST00000507302 URB2Q14146 1524 aaKnown RBP31.67■■■□□ 2.66
SNF8-205ENST00000507302 OSCARQ8IYS5 282 aa31.62■■■□□ 2.65
SNF8-205ENST00000507302 PRDM2Q13029 1718 aa31.55■■■□□ 2.64
SNF8-205ENST00000507302 IFT140Q96RY7 1462 aa31.33■■■□□ 2.61
SNF8-205ENST00000507302 RIMBP3CA6NJZ7 1639 aa31.33■■■□□ 2.61
SNF8-205ENST00000507302 RIMBP3BA6NNM3 1639 aa31.33■■■□□ 2.61
SNF8-205ENST00000507302 RIMBP3Q9UFD9 1639 aa31.33■■■□□ 2.61
SNF8-205ENST00000507302 ZNF608Q9ULD9 1512 aaPredicted RBP31.3■■■□□ 2.6
SNF8-205ENST00000507302 CCDC88BA6NC98 1476 aa31.29■■■□□ 2.6
SNF8-205ENST00000507302 TOPBP1Q92547 1522 aa31.24■■■□□ 2.59
SNF8-205ENST00000507302 ARHGEF11O15085 1522 aa31.19■■■□□ 2.58
SNF8-205ENST00000507302 ABCC8Q09428 1581 aa31.17■■■□□ 2.58
SNF8-205ENST00000507302 EIF4G3O43432 1585 aaKnown RBP31.14■■■□□ 2.58
SNF8-205ENST00000507302 DNMBPQ6XZF7 1577 aa31.11■■■□□ 2.57
SNF8-205ENST00000507302 TARBP1Q13395 1621 aaKnown RBP31.06■■■□□ 2.56
SNF8-205ENST00000507302 CHD1O14646 1710 aa30.98■■■□□ 2.55
SNF8-205ENST00000507302 AQRO60306 1485 aaKnown RBP eCLIP30.94■■■□□ 2.543e-6■■■□□ 17.8
SNF8-205ENST00000507302 POLA1P09884 1462 aaPredicted RBP30.89■■■□□ 2.54
SNF8-205ENST00000507302 ARAP1Q96P48 1450 aa30.85■■■□□ 2.53
SNF8-205ENST00000507302 CYB5RLQ6IPT4 315 aa30.84■■■□□ 2.53
SNF8-205ENST00000507302 WDR97A6NE52 1622 aa30.76■■■□□ 2.51
SNF8-205ENST00000507302 RAD54L2Q9Y4B4 1467 aa30.74■■■□□ 2.51
SNF8-205ENST00000507302 SOGA1O94964 1423 aa30.7■■■□□ 2.5
SNF8-205ENST00000507302 CLASP1Q7Z460 1538 aa30.68■■■□□ 2.5
SNF8-205ENST00000507302 TDRD9Q8NDG6 1382 aaKnown RBP30.66■■■□□ 2.5
SNF8-205ENST00000507302 FBLN2P98095 1184 aa30.64■■■□□ 2.5
SNF8-205ENST00000507302 SNAPC4Q5SXM2 1469 aa30.62■■■□□ 2.49
SNF8-205ENST00000507302 FGD5Q6ZNL6 1462 aa30.62■■■□□ 2.49
SNF8-205ENST00000507302 MAGI1Q96QZ7 1491 aaPredicted RBP30.58■■■□□ 2.49
SNF8-205ENST00000507302 CUX1P39880 1505 aa30.56■■■□□ 2.48
SNF8-205ENST00000507302 SYNJ1O43426 1573 aa30.54■■■□□ 2.48
SNF8-205ENST00000507302 TRHP20396 242 aaPredicted RBP30.54■■■□□ 2.48
SNF8-205ENST00000507302 GRIN2BQ13224 1484 aa30.51■■■□□ 2.48
SNF8-205ENST00000507302 SYNJ2O15056 1496 aa30.47■■■□□ 2.47
SNF8-205ENST00000507302 CHMP7Q8WUX9 453 aaPredicted RBP30.44■■■□□ 2.46
SNF8-205ENST00000507302 PBRM1Q86U86 1689 aa30.39■■■□□ 2.46
SNF8-205ENST00000507302 GAPVD1Q14C86 1478 aa30.33■■■□□ 2.45
SNF8-205ENST00000507302 ABCA5Q8WWZ7 1642 aa30.33■■■□□ 2.45
SNF8-205ENST00000507302 ABCA10Q8WWZ4 1543 aa30.31■■■□□ 2.44
SNF8-205ENST00000507302 GRIN2AQ12879 1464 aa30.13■■■□□ 2.41
SNF8-205ENST00000507302 NUP160Q12769 1436 aa30.1■■■□□ 2.41
SNF8-205ENST00000507302 ERCC6L2Q5T890 1561 aa30.1■■■□□ 2.41
SNF8-205ENST00000507302 ADAMTS12P58397 1594 aa30.08■■■□□ 2.41
SNF8-205ENST00000507302 SHROOM2Q13796 1616 aa30.06■■■□□ 2.4
SNF8-205ENST00000507302 CEP170Q5SW79 1584 aa30.06■■■□□ 2.4
SNF8-205ENST00000507302 WRNQ14191 1432 aaPredicted RBP eCLIP30.04■■■□□ 2.4
SNF8-205ENST00000507302 BIVM-ERCC5R4GMW8 1640 aa30.03■■■□□ 2.4
SNF8-205ENST00000507302 TOP2BQ02880 1626 aa29.99■■■□□ 2.39
SNF8-205ENST00000507302 FHAD1B1AJZ9 1412 aa29.96■■■□□ 2.39
SNF8-205ENST00000507302 AEBP2Q6ZN18 517 aaPredicted RBP29.93■■■□□ 2.38
SNF8-205ENST00000507302 ERICH3Q5RHP9 1530 aa29.92■■■□□ 2.38
SNF8-205ENST00000507302 KIF13AQ9H1H9 1805 aa29.84■■■□□ 2.37
SNF8-205ENST00000507302 PRG4Q92954 1404 aaPredicted RBP29.73■■■□□ 2.35
SNF8-205ENST00000507302 SUPT5HO00267 1087 aaKnown RBP29.72■■■□□ 2.35
SNF8-205ENST00000507302 RUSC2Q8N2Y8 1516 aa29.68■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms