RNA–Protein interactions for RNA: ENST00000526191.1

COPB1-204, Transcript of coatomer protein complex subunit beta 1, humanhuman

TSL 2

Gene COPB1, Length 697 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-204ENST00000526191 AEBP2Q6ZN18 517 aaPredicted RBP33.56■■■□□ 2.96
COPB1-204ENST00000526191 CHIC1Q5VXU3 224 aa32.42■■■□□ 2.78
COPB1-204ENST00000526191 PHF23Q9BUL5 403 aaPredicted RBP28.52■■■□□ 2.16
COPB1-204ENST00000526191 SENP3Q9H4L4 574 aaPredicted RBP28.43■■■□□ 2.14
COPB1-204ENST00000526191 FOXD1Q16676 465 aa26.49■■□□□ 1.83
COPB1-204ENST00000526191 PLPPR3Q6T4P5 718 aa26.15■■□□□ 1.78
COPB1-204ENST00000526191 PPP6R1Q9UPN7 881 aa25.28■■□□□ 1.64
COPB1-204ENST00000526191 ADRA2BP18089 450 aa25.23■■□□□ 1.63
COPB1-204ENST00000526191 PIAS4Q8N2W9 510 aaPredicted RBP24.89■■□□□ 1.58
COPB1-204ENST00000526191 MSH5O43196 834 aa24.46■■□□□ 1.51
COPB1-204ENST00000526191 PPP4R3CPQ6ZMV5 832 aa23.05■■□□□ 1.28
COPB1-204ENST00000526191 MAPK8IP2Q13387 824 aaPredicted RBP23■■□□□ 1.27
COPB1-204ENST00000526191 SCAF1Q9H7N4 1312 aaKnown RBP22.97■■□□□ 1.27
COPB1-204ENST00000526191 POTEDQ86YR6 584 aa22.88■■□□□ 1.25
COPB1-204ENST00000526191 DMRT2Q9Y5R5 561 aa22.66■■□□□ 1.22
COPB1-204ENST00000526191 CNKSR2Q8WXI2 1034 aa22.43■■□□□ 1.18
COPB1-204ENST00000526191 NCBP3Q53F19 620 aaKnown RBP22.29■■□□□ 1.16
COPB1-204ENST00000526191 KCNA4P22459 653 aa22.21■■□□□ 1.15
COPB1-204ENST00000526191 HOXD11P31277 338 aaPredicted RBP22.07■■□□□ 1.12
COPB1-204ENST00000526191 RNF216Q9NWF9 866 aaPredicted RBP22.07■■□□□ 1.12
COPB1-204ENST00000526191 NPM3O75607 178 aaKnown RBP22.04■■□□□ 1.12
COPB1-204ENST00000526191 DCAF8L1A6NGE4 600 aa21.73■■□□□ 1.07
COPB1-204ENST00000526191 DNAJC5BQ9UF47 199 aa21.36■■□□□ 1.01
COPB1-204ENST00000526191 SLC4A1APQ9BWU0 796 aaKnown RBP21.05■□□□□ 0.96
COPB1-204ENST00000526191 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.04■□□□□ 0.962e-10■■■■□ 19.8
COPB1-204ENST00000526191 RNF39Q9H2S5 420 aa20.97■□□□□ 0.95
COPB1-204ENST00000526191 SLC4A2P04920 1241 aa20.91■□□□□ 0.94
COPB1-204ENST00000526191 U3KPZ7 1027 aaPredicted RBP20.71■□□□□ 0.91
COPB1-204ENST00000526191 CACNB1Q02641 598 aaPredicted RBP20.66■□□□□ 0.9
COPB1-204ENST00000526191 C1QBPQ07021 282 aaKnown RBP20.66■□□□□ 0.9
COPB1-204ENST00000526191 FOXD4L1Q9NU39 408 aa20.47■□□□□ 0.87
COPB1-204ENST00000526191 ZBTB22O15209 634 aa20.45■□□□□ 0.86
COPB1-204ENST00000526191 MYCNP04198 464 aaPredicted RBP20.34■□□□□ 0.85
COPB1-204ENST00000526191 SPINK5Q9NQ38 1064 aaPredicted RBP20.24■□□□□ 0.83
COPB1-204ENST00000526191 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.22■□□□□ 0.83
COPB1-204ENST00000526191 HNRNPUL2Q1KMD3 747 aaKnown RBP20.22■□□□□ 0.83
COPB1-204ENST00000526191 SAMD1Q6SPF0 538 aaPredicted RBP20.17■□□□□ 0.82
COPB1-204ENST00000526191 EHMT2Q96KQ7 1210 aa20.16■□□□□ 0.82
COPB1-204ENST00000526191 CAPN15O75808 1086 aa20.13■□□□□ 0.81
COPB1-204ENST00000526191 APLP2Q06481 763 aa20.07■□□□□ 0.8
COPB1-204ENST00000526191 CSRNP3Q8WYN3 585 aa20.06■□□□□ 0.8
COPB1-204ENST00000526191 TRHP20396 242 aaPredicted RBP19.98■□□□□ 0.79
COPB1-204ENST00000526191 ZNF219Q9P2Y4 722 aaPredicted RBP19.9■□□□□ 0.78
COPB1-204ENST00000526191 ATF5Q9Y2D1 282 aaPredicted RBP19.9■□□□□ 0.78
COPB1-204ENST00000526191 DSG3P32926 999 aa19.86■□□□□ 0.77
COPB1-204ENST00000526191 ABCB7O75027 752 aa19.77■□□□□ 0.76
COPB1-204ENST00000526191 ATXN8OSP0DMR3 200 aa19.73■□□□□ 0.75
COPB1-204ENST00000526191 POLA2Q14181 598 aa19.57■□□□□ 0.72
COPB1-204ENST00000526191 ZBTB12Q9Y330 459 aaPredicted RBP19.14■□□□□ 0.65
COPB1-204ENST00000526191 MKRN4PQ13434 485 aaPredicted RBP19■□□□□ 0.63
COPB1-204ENST00000526191 FBLN2P98095 1184 aa18.98■□□□□ 0.63
COPB1-204ENST00000526191 OSCARQ8IYS5 282 aa18.94■□□□□ 0.62
COPB1-204ENST00000526191 RBM42Q9BTD8 480 aaKnown RBP18.88■□□□□ 0.61
COPB1-204ENST00000526191 SPDYE2BA6NHP3 402 aa18.65■□□□□ 0.58
COPB1-204ENST00000526191 SPDYE6P0CI01 402 aa18.65■□□□□ 0.58
COPB1-204ENST00000526191 SPDYE2Q495Y8 402 aa18.65■□□□□ 0.58
COPB1-204ENST00000526191 AKT1S1Q96B36 256 aa18.6■□□□□ 0.57
COPB1-204ENST00000526191 ZNF692Q9BU19 519 aaPredicted RBP18.54■□□□□ 0.56
COPB1-204ENST00000526191 SSUH2Q9Y2M2 353 aa18.5■□□□□ 0.55
COPB1-204ENST00000526191 REM2Q8IYK8 340 aaPredicted RBP18.46■□□□□ 0.55
COPB1-204ENST00000526191 SPDYE4A6NLX3 237 aa18.38■□□□□ 0.53
COPB1-204ENST00000526191 PABPN1Q86U42 306 aaKnown RBP eCLIP18.31■□□□□ 0.52
COPB1-204ENST00000526191 PITPNM1O00562 1244 aa18.27■□□□□ 0.52
COPB1-204ENST00000526191 CHRDL2Q6WN34 429 aa18.26■□□□□ 0.51
COPB1-204ENST00000526191 SPDYE1Q8NFV5 336 aaPredicted RBP18.17■□□□□ 0.5
COPB1-204ENST00000526191 CLEC11AQ9Y240 323 aa18.15■□□□□ 0.5
COPB1-204ENST00000526191 FKBP8Q14318 412 aa18.14■□□□□ 0.49
COPB1-204ENST00000526191 POTEHQ6S545 545 aa18.04■□□□□ 0.48
COPB1-204ENST00000526191 PROM2Q8N271 834 aa18.03■□□□□ 0.48
COPB1-204ENST00000526191 PIP4P2Q8N4L2 257 aa17.98■□□□□ 0.47
COPB1-204ENST00000526191 FXR2P51116 673 aaKnown RBP eCLIP17.96■□□□□ 0.471e-8■□□□□ 11
COPB1-204ENST00000526191 PRR29P0C7W0 189 aa17.91■□□□□ 0.46
COPB1-204ENST00000526191 STAG3Q9UJ98 1225 aa17.88■□□□□ 0.45
COPB1-204ENST00000526191 PRKAR2AP13861 404 aaKnown RBP17.79■□□□□ 0.44
COPB1-204ENST00000526191 CHADLQ6NUI6 762 aa17.78■□□□□ 0.44
COPB1-204ENST00000526191 CREBZFQ9NS37 354 aa17.65■□□□□ 0.42
COPB1-204ENST00000526191 FARP1Q9Y4F1 1045 aaPredicted RBP17.52■□□□□ 0.4
COPB1-204ENST00000526191 FBXO3Q9UK99 471 aa17.49■□□□□ 0.39
COPB1-204ENST00000526191 HAX1O00165 279 aa17.47■□□□□ 0.39
COPB1-204ENST00000526191 MIER1Q8N108 512 aa17.45■□□□□ 0.38
COPB1-204ENST00000526191 MNX1P50219 401 aaPredicted RBP17.43■□□□□ 0.38
COPB1-204ENST00000526191 PLCD3Q8N3E9 789 aa17.4■□□□□ 0.38
COPB1-204ENST00000526191 EVX2Q03828 476 aa17.37■□□□□ 0.37
COPB1-204ENST00000526191 C19orf67A6NJJ6 358 aa17.36■□□□□ 0.37
COPB1-204ENST00000526191 VASPP50552 380 aaPredicted RBP17.33■□□□□ 0.36
COPB1-204ENST00000526191 PLEKHG5O94827 1062 aa17.32■□□□□ 0.36
COPB1-204ENST00000526191 NPM1P06748 294 aaKnown RBP eCLIP17.28■□□□□ 0.36
COPB1-204ENST00000526191 CD44P16070 742 aaKnown RBP17.26■□□□□ 0.35
COPB1-204ENST00000526191 SP7Q8TDD2 431 aaPredicted RBP17.19■□□□□ 0.34
COPB1-204ENST00000526191 ZBTB47Q9UFB7 747 aaPredicted RBP17.15■□□□□ 0.34
COPB1-204ENST00000526191 ZRANB1Q9UGI0 708 aa17.12■□□□□ 0.33
COPB1-204ENST00000526191 IFNLR1Q8IU57 520 aaPredicted RBP17.09■□□□□ 0.33
COPB1-204ENST00000526191 RASEFQ8IZ41 740 aa17.09■□□□□ 0.33
COPB1-204ENST00000526191 KLHL34Q8N239 644 aa17.09■□□□□ 0.33
COPB1-204ENST00000526191 NUBP1P53384 320 aa17.07■□□□□ 0.32
COPB1-204ENST00000526191 PAK3O75914 559 aaPredicted RBP17.06■□□□□ 0.32
COPB1-204ENST00000526191 TSPYL2Q9H2G4 693 aaPredicted RBP17.06■□□□□ 0.32
COPB1-204ENST00000526191 ZNF579Q8NAF0 562 aaKnown RBP17.02■□□□□ 0.32
COPB1-204ENST00000526191 PHF12Q96QT6 1004 aa16.98■□□□□ 0.31
COPB1-204ENST00000526191 GABBR2O75899 941 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms