RNA–Protein interactions for RNA: ENST00000522387.5

PABPC1-219, Transcript of poly(A) binding protein cytoplasmic 1, humanhuman

TSL 2 BASIC

Gene PABPC1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PABPC1-219ENST00000522387 NISCHQ9Y2I1 1504 aa28.78■■■□□ 2.2
PABPC1-219ENST00000522387 CCDC180Q9P1Z9 1646 aa25.18■■□□□ 1.62
PABPC1-219ENST00000522387 ABCC9O60706 1549 aa24.53■■□□□ 1.52
PABPC1-219ENST00000522387 DCAF8L2P0C7V8 631 aa24.3■■□□□ 1.48
PABPC1-219ENST00000522387 ZCCHC6Q5VYS8 1495 aaKnown RBP24.05■■□□□ 1.44
PABPC1-219ENST00000522387 DCAF1Q9Y4B6 1507 aa23.63■■□□□ 1.37
PABPC1-219ENST00000522387 NACADO15069 1562 aa23.61■■□□□ 1.37
PABPC1-219ENST00000522387 RB1CC1Q8TDY2 1594 aa23.57■■□□□ 1.36
PABPC1-219ENST00000522387 MYO15BQ96JP2 1530 aa23.5■■□□□ 1.35
PABPC1-219ENST00000522387 SHROOM4Q9ULL8 1493 aa23.47■■□□□ 1.35
PABPC1-219ENST00000522387 SCRIBQ14160 1630 aa23.33■■□□□ 1.33
PABPC1-219ENST00000522387 PABPN1Q86U42 306 aaKnown RBP eCLIP23.14■■□□□ 1.29
PABPC1-219ENST00000522387 UNC13AQ9UPW8 1703 aa23.12■■□□□ 1.29
PABPC1-219ENST00000522387 BICRAQ9NZM4 1560 aa22.89■■□□□ 1.26
PABPC1-219ENST00000522387 CECR2Q9BXF3 1484 aa22.52■■□□□ 1.2
PABPC1-219ENST00000522387 SUPT5HO00267 1087 aaKnown RBP22.35■■□□□ 1.17
PABPC1-219ENST00000522387 MROH2BQ7Z745 1585 aa22.29■■□□□ 1.16
PABPC1-219ENST00000522387 EIF4G1Q04637 1599 aaKnown RBP22.27■■□□□ 1.16
PABPC1-219ENST00000522387 BAZ1AQ9NRL2 1556 aaPredicted RBP22.24■■□□□ 1.15
PABPC1-219ENST00000522387 SMARCA4P51532 1647 aa22.22■■□□□ 1.15
PABPC1-219ENST00000522387 RSF1Q96T23 1441 aaPredicted RBP22.2■■□□□ 1.14
PABPC1-219ENST00000522387 DNAJC5BQ9UF47 199 aa22.13■■□□□ 1.13
PABPC1-219ENST00000522387 WIZO95785 1651 aa22.1■■□□□ 1.13
PABPC1-219ENST00000522387 CC2D2AQ9P2K1 1620 aa22.09■■□□□ 1.13
PABPC1-219ENST00000522387 ATAD2BQ9ULI0 1458 aa22■■□□□ 1.11
PABPC1-219ENST00000522387 SMARCA2P51531 1590 aa21.91■■□□□ 1.1
PABPC1-219ENST00000522387 BAZ1BQ9UIG0 1483 aaKnown RBP21.87■■□□□ 1.09
PABPC1-219ENST00000522387 PEG3Q9GZU2 1588 aa21.86■■□□□ 1.09
PABPC1-219ENST00000522387 NCAPD3P42695 1498 aa21.83■■□□□ 1.09
PABPC1-219ENST00000522387 TOP2AP11388 1531 aaKnown RBP21.74■■□□□ 1.07
PABPC1-219ENST00000522387 HMGXB3Q12766 1538 aa21.72■■□□□ 1.07
PABPC1-219ENST00000522387 CCDC88BA6NC98 1476 aa21.61■■□□□ 1.05
PABPC1-219ENST00000522387 NESP48681 1621 aa21.39■■□□□ 1.01
PABPC1-219ENST00000522387 CADPSQ9ULU8 1353 aa21.31■■□□□ 1
PABPC1-219ENST00000522387 CFTRP13569 1480 aa21.25■□□□□ 0.99
PABPC1-219ENST00000522387 LAMC3Q9Y6N6 1575 aa21.16■□□□□ 0.98
PABPC1-219ENST00000522387 FANCD2Q9BXW9 1451 aa21.09■□□□□ 0.97
PABPC1-219ENST00000522387 ABCC8Q09428 1581 aa21.08■□□□□ 0.97
PABPC1-219ENST00000522387 PDS5BQ9NTI5 1447 aa21.07■□□□□ 0.96
PABPC1-219ENST00000522387 ERCC6Q03468 1493 aa21.06■□□□□ 0.96
PABPC1-219ENST00000522387 KIF21AQ7Z4S6 1674 aa21.04■□□□□ 0.96
PABPC1-219ENST00000522387 PRDM2Q13029 1718 aa21.02■□□□□ 0.95
PABPC1-219ENST00000522387 CEP164Q9UPV0 1460 aa20.99■□□□□ 0.95
PABPC1-219ENST00000522387 CHIC1Q5VXU3 224 aa20.99■□□□□ 0.95
PABPC1-219ENST00000522387 TRIM41Q8WV44 630 aa20.94■□□□□ 0.94
PABPC1-219ENST00000522387 WRNQ14191 1432 aaPredicted RBP eCLIP20.92■□□□□ 0.94
PABPC1-219ENST00000522387 CUX1P39880 1505 aa20.85■□□□□ 0.93
PABPC1-219ENST00000522387 URB2Q14146 1524 aaKnown RBP20.85■□□□□ 0.93
PABPC1-219ENST00000522387 SYNJ1O43426 1573 aa20.85■□□□□ 0.93
PABPC1-219ENST00000522387 MRC2Q9UBG0 1479 aa20.81■□□□□ 0.92
PABPC1-219ENST00000522387 TOPBP1Q92547 1522 aa20.79■□□□□ 0.92
PABPC1-219ENST00000522387 THOC2Q8NI27 1593 aaKnown RBP20.75■□□□□ 0.91
PABPC1-219ENST00000522387 DNMBPQ6XZF7 1577 aa20.74■□□□□ 0.91
PABPC1-219ENST00000522387 TOP2BQ02880 1626 aa20.73■□□□□ 0.91
PABPC1-219ENST00000522387 FGD5Q6ZNL6 1462 aa20.72■□□□□ 0.91
PABPC1-219ENST00000522387 FAM9AQ8IZU1 332 aaPredicted RBP20.7■□□□□ 0.9
PABPC1-219ENST00000522387 WDR62O43379 1518 aa20.68■□□□□ 0.9
PABPC1-219ENST00000522387 RAD54L2Q9Y4B4 1467 aa20.68■□□□□ 0.9
PABPC1-219ENST00000522387 BIVM-ERCC5R4GMW8 1640 aa20.68■□□□□ 0.9
PABPC1-219ENST00000522387 POLA1P09884 1462 aaPredicted RBP20.68■□□□□ 0.9
PABPC1-219ENST00000522387 SOGA1O94964 1423 aa20.63■□□□□ 0.89
PABPC1-219ENST00000522387 CUX2O14529 1486 aa20.59■□□□□ 0.89
PABPC1-219ENST00000522387 EHMT2Q96KQ7 1210 aa20.58■□□□□ 0.88
PABPC1-219ENST00000522387 RUSC2Q8N2Y8 1516 aa20.56■□□□□ 0.88
PABPC1-219ENST00000522387 TDRD9Q8NDG6 1382 aaKnown RBP20.55■□□□□ 0.88
PABPC1-219ENST00000522387 ZNF608Q9ULD9 1512 aaPredicted RBP20.51■□□□□ 0.87
PABPC1-219ENST00000522387 AQRO60306 1485 aaKnown RBP eCLIP20.49■□□□□ 0.871e-6■■■■■ 29.3
PABPC1-219ENST00000522387 TARBP1Q13395 1621 aaKnown RBP20.48■□□□□ 0.87
PABPC1-219ENST00000522387 IFT140Q96RY7 1462 aa20.46■□□□□ 0.87
PABPC1-219ENST00000522387 ABCA10Q8WWZ4 1543 aa20.44■□□□□ 0.86
PABPC1-219ENST00000522387 KIF27Q86VH2 1401 aa20.41■□□□□ 0.86
PABPC1-219ENST00000522387 WDR97A6NE52 1622 aa20.38■□□□□ 0.85
PABPC1-219ENST00000522387 GAPVD1Q14C86 1478 aa20.37■□□□□ 0.85
PABPC1-219ENST00000522387 CSRNP3Q8WYN3 585 aa20.35■□□□□ 0.85
PABPC1-219ENST00000522387 EIF4G3O43432 1585 aaKnown RBP20.35■□□□□ 0.85
PABPC1-219ENST00000522387 LOC105371045A0A1W2PR82 267 aa20.32■□□□□ 0.84
PABPC1-219ENST00000522387 IGF1RP08069 1367 aa20.3■□□□□ 0.84
PABPC1-219ENST00000522387 ABCA5Q8WWZ7 1642 aa20.3■□□□□ 0.84
PABPC1-219ENST00000522387 FBLN2P98095 1184 aa20.3■□□□□ 0.84
PABPC1-219ENST00000522387 GRIN2BQ13224 1484 aa20.24■□□□□ 0.83
PABPC1-219ENST00000522387 PBRM1Q86U86 1689 aa20.24■□□□□ 0.83
PABPC1-219ENST00000522387 EEA1Q15075 1411 aa20.23■□□□□ 0.83
PABPC1-219ENST00000522387 SNAPC4Q5SXM2 1469 aa20.23■□□□□ 0.83
PABPC1-219ENST00000522387 CARMIL1Q5VZK9 1371 aa20.21■□□□□ 0.83
PABPC1-219ENST00000522387 CHMP7Q8WUX9 453 aaPredicted RBP20.18■□□□□ 0.82
PABPC1-219ENST00000522387 ERICH3Q5RHP9 1530 aa20.17■□□□□ 0.82
PABPC1-219ENST00000522387 UBTFP17480 764 aaKnown RBP20.17■□□□□ 0.82
PABPC1-219ENST00000522387 RANGAP1P46060 587 aaPredicted RBP20.17■□□□□ 0.82
PABPC1-219ENST00000522387 RAPGEF2Q9Y4G8 1499 aa20.16■□□□□ 0.82
PABPC1-219ENST00000522387 PRXQ9BXM0 1461 aa20.11■□□□□ 0.81
PABPC1-219ENST00000522387 FHAD1B1AJZ9 1412 aa20.09■□□□□ 0.81
PABPC1-219ENST00000522387 ADAMTS12P58397 1594 aa20.09■□□□□ 0.81
PABPC1-219ENST00000522387 MAGI1Q96QZ7 1491 aaPredicted RBP20.08■□□□□ 0.81
PABPC1-219ENST00000522387 CUL7Q14999 1698 aa20.08■□□□□ 0.8
PABPC1-219ENST00000522387 SYNJ2O15056 1496 aa20.05■□□□□ 0.8
PABPC1-219ENST00000522387 GOLGA3Q08378 1498 aa20.03■□□□□ 0.8
PABPC1-219ENST00000522387 KIF21BO75037 1637 aa20.02■□□□□ 0.8
PABPC1-219ENST00000522387 GRIN2AQ12879 1464 aa20.01■□□□□ 0.79
PABPC1-219ENST00000522387 CHD1O14646 1710 aa20.01■□□□□ 0.79
PABPC1-219ENST00000522387 CEP170Q5SW79 1584 aa19.91■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms