Protein–RNA interactions for Protein: P23396

RPS3, 40S ribosomal protein S3, humanhuman

Known RBP eCLIP

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS3P23396 MORF4L2-212ENST00000474653 573 ntTSL 20.87□□□□□ -2.272e-6■■□□□ 13.1
RPS3P23396 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.252e-6■■□□□ 13.1
RPS3P23396 RSRP1-219ENST00000568701 629 ntAPPRIS ALT2 TSL 416.36■□□□□ 0.212e-6■■□□□ 13.1
RPS3P23396 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.112e-6■■□□□ 13.1
RPS3P23396 RSRP1-217ENST00000568254 2013 ntTSL 1 (best)15.45■□□□□ 0.062e-6■■□□□ 13.1
RPS3P23396 RSRP1-204ENST00000473314 3034 ntTSL 213.52□□□□□ -0.242e-6■■□□□ 13.1
RPS3P23396 RSRP1-216ENST00000568212 570 ntTSL 412.9□□□□□ -0.342e-6■■□□□ 13.1
RPS3P23396 RSRP1-207ENST00000498238 2941 ntTSL 212.32□□□□□ -0.442e-6■■□□□ 13.1
RPS3P23396 CTSA-208ENST00000485627 695 ntTSL 39.45□□□□□ -0.93e-8■■□□□ 13
RPS3P23396 MYH9-204ENST00000459960 687 ntTSL 210.43□□□□□ -0.742e-14■■□□□ 13
RPS3P23396 FDFT1-213ENST00000528729 570 ntTSL 35.29□□□□□ -1.563e-16■■□□□ 13
RPS3P23396 DDX5-227ENST00000583894 712 ntTSL 29.34□□□□□ -0.916e-14■■□□□ 13
RPS3P23396 DDX5-230ENST00000584549 807 ntTSL 26.23□□□□□ -1.416e-14■■□□□ 13
RPS3P23396 DDX5-204ENST00000577787 838 ntTSL 26.23□□□□□ -1.416e-14■■□□□ 13
RPS3P23396 ARF4-202ENST00000463880 641 ntTSL 320.29■□□□□ 0.846e-12■■□□□ 13
RPS3P23396 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.031e-6■■□□□ 13
RPS3P23396 VPS28-212ENST00000530836 1613 ntTSL 521.03■□□□□ 0.965e-7■■□□□ 13
RPS3P23396 VPS28-205ENST00000526204 2120 ntTSL 520.94■□□□□ 0.945e-7■■□□□ 13
RPS3P23396 VPS28-208ENST00000527797 1609 ntTSL 520.86■□□□□ 0.935e-7■■□□□ 13
RPS3P23396 VPS28-209ENST00000528142 1821 ntTSL 320.55■□□□□ 0.885e-7■■□□□ 13
RPS3P23396 VPS28-213ENST00000530983 2337 ntTSL 518.86■□□□□ 0.615e-7■■□□□ 13
RPS3P23396 VPS28-207ENST00000526977 2036 ntTSL 518.59■□□□□ 0.575e-7■■□□□ 13
RPS3P23396 VPS28-201ENST00000292510 979 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.325e-7■■□□□ 13
RPS3P23396 VPS28-202ENST00000377348 1097 ntTSL 1 (best) BASIC13.05□□□□□ -0.325e-7■■□□□ 13
RPS3P23396 VPS28-210ENST00000529182 1010 ntTSL 2 BASIC13.05□□□□□ -0.325e-7■■□□□ 13
RPS3P23396 VPS28-216ENST00000533806 650 ntTSL 312.67□□□□□ -0.385e-7■■□□□ 13
RPS3P23396 VPS28-214ENST00000531032 573 ntTSL 1 (best)10.87□□□□□ -0.675e-7■■□□□ 13
RPS3P23396 VPS28-204ENST00000526054 892 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.825e-7■■□□□ 13
RPS3P23396 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.082e-7■■□□□ 13
RPS3P23396 AHCY-204ENST00000480653 2211 ntTSL 214.87□□□□□ -0.032e-7■■□□□ 13
RPS3P23396 AHCY-205ENST00000538132 2366 ntTSL 2 BASIC13.61□□□□□ -0.232e-7■■□□□ 13
RPS3P23396 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC22.09■■□□□ 1.132e-6■■□□□ 13
RPS3P23396 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.722e-6■■□□□ 13
RPS3P23396 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.712e-6■■□□□ 13
RPS3P23396 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC19.42■□□□□ 0.72e-6■■□□□ 13
RPS3P23396 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC18.6■□□□□ 0.572e-6■■□□□ 13
RPS3P23396 GPI-206ENST00000587384 810 ntTSL 318.28■□□□□ 0.521e-23■■□□□ 13
RPS3P23396 GPI-217ENST00000592277 615 ntTSL 416.94■□□□□ 0.31e-23■■□□□ 13
RPS3P23396 AP2A1-205ENST00000597774 2196 ntTSL 516.99■□□□□ 0.311e-6■■□□□ 13
RPS3P23396 EIF4G1-231ENST00000464548 637 ntTSL 512.49□□□□□ -0.413e-8■■□□□ 13
RPS3P23396 AP2A1-201ENST00000354293 3388 ntAPPRIS ALT1 TSL 1 (best) BASIC11.53□□□□□ -0.561e-6■■□□□ 13
RPS3P23396 AP2A1-202ENST00000359032 3286 ntAPPRIS P4 TSL 5 BASIC11.11□□□□□ -0.631e-6■■□□□ 13
RPS3P23396 EMC1-211ENST00000488681 562 ntTSL 39.71□□□□□ -0.863e-7■■□□□ 13
RPS3P23396 HSPA9-209ENST00000507886 551 ntTSL 39.45□□□□□ -0.96e-13■■□□□ 13
RPS3P23396 MVD-208ENST00000563785 888 ntTSL 218.83■□□□□ 0.64e-9■■□□□ 13
RPS3P23396 MVD-214ENST00000567064 758 ntTSL 318.32■□□□□ 0.524e-9■■□□□ 13
RPS3P23396 MVD-217ENST00000569177 870 ntTSL 516.66■□□□□ 0.264e-9■■□□□ 13
RPS3P23396 MVD-215ENST00000568133 853 ntTSL 316.06■□□□□ 0.164e-9■■□□□ 13
RPS3P23396 MVD-206ENST00000563170 904 ntTSL 316.06■□□□□ 0.164e-9■■□□□ 13
RPS3P23396 SND1-204ENST00000465900 630 ntTSL 45.14□□□□□ -1.598e-9■■□□□ 13
RPS3P23396 HNRNPL-214ENST00000601813 593 ntTSL 512.46□□□□□ -0.412e-9■■□□□ 13
RPS3P23396 MOGS-209ENST00000489655 489 ntTSL 36.22□□□□□ -1.413e-10■■□□□ 13
RPS3P23396 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC25.82■■□□□ 1.723e-7■■□□□ 13
RPS3P23396 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC23.25■■□□□ 1.313e-7■■□□□ 13
RPS3P23396 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.06■□□□□ 0.963e-7■■□□□ 13
RPS3P23396 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC30.55■■■□□ 2.481e-6■■□□□ 13
RPS3P23396 BUD23-212ENST00000453316 452 ntTSL 311.87□□□□□ -0.513e-6■■□□□ 13
RPS3P23396 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.213e-8■■□□□ 13
RPS3P23396 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.183e-8■■□□□ 13
RPS3P23396 FBLN1-215ENST00000460538 543 ntTSL 211.89□□□□□ -0.513e-8■■□□□ 13
RPS3P23396 MGAT5-202ENST00000409645 8252 ntAPPRIS P1 TSL 5 BASIC8.18□□□□□ -1.12e-6■■□□□ 13
RPS3P23396 RPS3-208ENST00000527273 390 ntTSL 311.08□□□□□ -0.642e-14■■□□□ 13
RPS3P23396 FNDC3B-202ENST00000415807 5083 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.62e-8■■□□□ 13
RPS3P23396 FNDC3B-201ENST00000336824 7904 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.952e-8■■□□□ 13
RPS3P23396 FNDC3B-203ENST00000416957 3684 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.132e-8■■□□□ 13
RPS3P23396 TGFBI-215ENST00000604555 1173 ntTSL 214.52□□□□□ -0.095e-9■■□□□ 13
RPS3P23396 PCYOX1-206ENST00000480949 620 ntTSL 25.48□□□□□ -1.533e-6■■□□□ 13
RPS3P23396 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC15.01□□□□□ -0.012e-6■■□□□ 13
RPS3P23396 IFITM2-205ENST00000602569 605 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.452e-6■■□□□ 13
RPS3P23396 IFITM2-202ENST00000399817 659 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.52e-6■■□□□ 13
RPS3P23396 IFITM2-206ENST00000616316 892 ntAPPRIS P2 TSL 1 (best) BASIC9.25□□□□□ -0.932e-6■■□□□ 13
RPS3P23396 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC18.92■□□□□ 0.623e-13■■□□□ 13
RPS3P23396 ATP6V1G2-DDX39B-201ENST00000376185 2039 ntAPPRIS P1 TSL 2 BASIC11.61□□□□□ -0.551e-12■■□□□ 13
RPS3P23396 DDX39B-214ENST00000458640 2003 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.651e-12■■□□□ 13
RPS3P23396 DDX39B-201ENST00000376177 1529 ntTSL 5 BASIC10.03□□□□□ -0.81e-12■■□□□ 13
RPS3P23396 DDX39B-202ENST00000396172 2133 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.841e-12■■□□□ 13
RPS3P23396 DDX39B-215ENST00000462256 4027 ntTSL 28.96□□□□□ -0.981e-12■■□□□ 13
RPS3P23396 TM7SF3-204ENST00000535423 537 ntTSL 425.16■■□□□ 1.621e-7■■□□□ 13
RPS3P23396 TM7SF3-214ENST00000543803 577 ntTSL 325.16■■□□□ 1.621e-7■■□□□ 13
RPS3P23396 TM7SF3-207ENST00000539399 553 ntTSL 424.26■■□□□ 1.471e-7■■□□□ 13
RPS3P23396 TM7SF3-212ENST00000543088 601 ntTSL 424.26■■□□□ 1.471e-7■■□□□ 13
RPS3P23396 TM7SF3-210ENST00000542019 737 ntTSL 324.14■■□□□ 1.451e-7■■□□□ 13
RPS3P23396 TM7SF3-219ENST00000545600 579 ntTSL 424.14■■□□□ 1.451e-7■■□□□ 13
RPS3P23396 TM7SF3-205ENST00000535819 788 ntTSL 323.67■■□□□ 1.381e-7■■□□□ 13
RPS3P23396 TM7SF3-208ENST00000539741 573 ntTSL 419.86■□□□□ 0.771e-7■■□□□ 13
RPS3P23396 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.631e-7■■□□□ 13
RPS3P23396 TM7SF3-211ENST00000542667 613 ntTSL 313.87□□□□□ -0.191e-7■■□□□ 13
RPS3P23396 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC18.3■□□□□ 0.521e-9■■□□□ 13
RPS3P23396 PCK2-212ENST00000560106 782 ntTSL 512.15□□□□□ -0.465e-10■■□□□ 13
RPS3P23396 DCXR-213ENST00000580320 915 ntTSL 221.37■■□□□ 1.011e-10■■□□□ 13
RPS3P23396 DCXR-206ENST00000578273 877 ntTSL 521.2■□□□□ 0.981e-10■■□□□ 13
RPS3P23396 DCXR-210ENST00000579334 1251 ntTSL 520.79■□□□□ 0.921e-10■■□□□ 13
RPS3P23396 DCXR-214ENST00000580750 1076 ntTSL 520.49■□□□□ 0.871e-10■■□□□ 13
RPS3P23396 DCXR-207ENST00000578885 968 ntTSL 520.27■□□□□ 0.841e-10■■□□□ 13
RPS3P23396 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.81e-10■■□□□ 13
RPS3P23396 DCXR-218ENST00000582900 676 ntTSL 319.74■□□□□ 0.751e-10■■□□□ 13
RPS3P23396 DCXR-215ENST00000581584 766 ntTSL 318.97■□□□□ 0.631e-10■■□□□ 13
RPS3P23396 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.015e-7■■□□□ 13
RPS3P23396 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC19.99■□□□□ 0.791e-6■■□□□ 13
RPS3P23396 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.561e-6■■□□□ 13
Retrieved 100 of 24,271 protein–RNA pairs in 162.5 ms