RNA–Protein interactions for RNA: ENST00000336824.8

FNDC3B-201, Transcript of fibronectin type III domain containing 3B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene FNDC3B, Length 7,904 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FNDC3B-201ENST00000336824 NISCHQ9Y2I1 1504 aa18.31■□□□□ 0.52
FNDC3B-201ENST00000336824 DCAF8L2P0C7V8 631 aa17.01■□□□□ 0.31
FNDC3B-201ENST00000336824 SHROOM4Q9ULL8 1493 aa16.02■□□□□ 0.16
FNDC3B-201ENST00000336824 CCDC180Q9P1Z9 1646 aa15.83■□□□□ 0.12
FNDC3B-201ENST00000336824 SUPT5HO00267 1087 aaKnown RBP15.83■□□□□ 0.12
FNDC3B-201ENST00000336824 ABCC9O60706 1549 aa15.61■□□□□ 0.09
FNDC3B-201ENST00000336824 ZCCHC6Q5VYS8 1495 aaKnown RBP15.22■□□□□ 0.03
FNDC3B-201ENST00000336824 RB1CC1Q8TDY2 1594 aa15.1■□□□□ 0.01
FNDC3B-201ENST00000336824 NACADO15069 1562 aa15.04■□□□□ -0
FNDC3B-201ENST00000336824 SCRIBQ14160 1630 aa15.02■□□□□ -0
FNDC3B-201ENST00000336824 PABPN1Q86U42 306 aaKnown RBP eCLIP15□□□□□ -0.01
FNDC3B-201ENST00000336824 FAM9AQ8IZU1 332 aaPredicted RBP14.9□□□□□ -0.02
FNDC3B-201ENST00000336824 TRIM41Q8WV44 630 aa14.9□□□□□ -0.02
FNDC3B-201ENST00000336824 DCAF1Q9Y4B6 1507 aa14.86□□□□□ -0.03
FNDC3B-201ENST00000336824 EHMT2Q96KQ7 1210 aa14.82□□□□□ -0.04
FNDC3B-201ENST00000336824 APLP2Q06481 763 aa14.77□□□□□ -0.04
FNDC3B-201ENST00000336824 MYO15BQ96JP2 1530 aa14.64□□□□□ -0.07
FNDC3B-201ENST00000336824 UBTFP17480 764 aaKnown RBP14.57□□□□□ -0.08
FNDC3B-201ENST00000336824 RANGAP1P46060 587 aaPredicted RBP14.45□□□□□ -0.1
FNDC3B-201ENST00000336824 BAZ1AQ9NRL2 1556 aaPredicted RBP14.41□□□□□ -0.1
FNDC3B-201ENST00000336824 CHIC1Q5VXU3 224 aa14.4□□□□□ -0.1
FNDC3B-201ENST00000336824 ATP1B4Q9UN42 357 aaPredicted RBP14.39□□□□□ -0.11
FNDC3B-201ENST00000336824 BAZ1BQ9UIG0 1483 aaKnown RBP14.31□□□□□ -0.12
FNDC3B-201ENST00000336824 RSF1Q96T23 1441 aaPredicted RBP14.28□□□□□ -0.12
FNDC3B-201ENST00000336824 TTBK1Q5TCY1 1321 aaPredicted RBP14.24□□□□□ -0.13
FNDC3B-201ENST00000336824 SMARCA2P51531 1590 aa14.22□□□□□ -0.13
FNDC3B-201ENST00000336824 CECR2Q9BXF3 1484 aa14.14□□□□□ -0.15
FNDC3B-201ENST00000336824 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.1□□□□□ -0.15
FNDC3B-201ENST00000336824 HNRNPUL2Q1KMD3 747 aaKnown RBP14.1□□□□□ -0.15
FNDC3B-201ENST00000336824 PCGF6Q9BYE7 350 aa14.09□□□□□ -0.15
FNDC3B-201ENST00000336824 SMARCA4P51532 1647 aa14.07□□□□□ -0.16
FNDC3B-201ENST00000336824 MROH2BQ7Z745 1585 aa14.07□□□□□ -0.16
FNDC3B-201ENST00000336824 LOC105371045A0A1W2PR82 267 aa14.07□□□□□ -0.16
FNDC3B-201ENST00000336824 FBLN2P98095 1184 aa14.03□□□□□ -0.16
FNDC3B-201ENST00000336824 WIZO95785 1651 aa14.02□□□□□ -0.16
FNDC3B-201ENST00000336824 CSRNP3Q8WYN3 585 aa14□□□□□ -0.17
FNDC3B-201ENST00000336824 TOP2AP11388 1531 aaKnown RBP13.99□□□□□ -0.17
FNDC3B-201ENST00000336824 ERCC6Q03468 1493 aa13.98□□□□□ -0.17
FNDC3B-201ENST00000336824 ZEB1P37275 1124 aaPredicted RBP13.95□□□□□ -0.18
FNDC3B-201ENST00000336824 CCER1Q8TC90 406 aaPredicted RBP13.93□□□□□ -0.18
FNDC3B-201ENST00000336824 TRIM26Q12899 539 aaPredicted RBP13.93□□□□□ -0.18
FNDC3B-201ENST00000336824 WRNQ14191 1432 aaPredicted RBP eCLIP13.92□□□□□ -0.18
FNDC3B-201ENST00000336824 UNC13AQ9UPW8 1703 aa13.91□□□□□ -0.18
FNDC3B-201ENST00000336824 ATAD2BQ9ULI0 1458 aa13.89□□□□□ -0.19
FNDC3B-201ENST00000336824 PPARGC1BQ86YN6 1023 aaKnown RBP13.89□□□□□ -0.19
FNDC3B-201ENST00000336824 EEA1Q15075 1411 aa13.89□□□□□ -0.19
FNDC3B-201ENST00000336824 CCDC88BA6NC98 1476 aa13.88□□□□□ -0.19
FNDC3B-201ENST00000336824 MYT1LQ9UL68 1186 aa13.88□□□□□ -0.19
FNDC3B-201ENST00000336824 EIF4G1Q04637 1599 aaKnown RBP13.86□□□□□ -0.19
FNDC3B-201ENST00000336824 PDS5BQ9NTI5 1447 aa13.86□□□□□ -0.19
FNDC3B-201ENST00000336824 KIF27Q86VH2 1401 aa13.8□□□□□ -0.2
FNDC3B-201ENST00000336824 CHMP7Q8WUX9 453 aaPredicted RBP13.78□□□□□ -0.2
FNDC3B-201ENST00000336824 ITGAEP38570 1179 aa13.78□□□□□ -0.2
FNDC3B-201ENST00000336824 CDK11AQ9UQ88 783 aaPredicted RBP13.75□□□□□ -0.21
FNDC3B-201ENST00000336824 CADPSQ9ULU8 1353 aa13.73□□□□□ -0.21
FNDC3B-201ENST00000336824 BICRAQ9NZM4 1560 aa13.72□□□□□ -0.21
FNDC3B-201ENST00000336824 P3H3Q8IVL6 736 aa13.71□□□□□ -0.21
FNDC3B-201ENST00000336824 NCAPD3P42695 1498 aa13.71□□□□□ -0.21
FNDC3B-201ENST00000336824 GOLGA3Q08378 1498 aa13.71□□□□□ -0.21
FNDC3B-201ENST00000336824 FAM50AQ14320 339 aaKnown RBP13.71□□□□□ -0.22
FNDC3B-201ENST00000336824 CC2D2AQ9P2K1 1620 aa13.71□□□□□ -0.22
FNDC3B-201ENST00000336824 CEP164Q9UPV0 1460 aa13.69□□□□□ -0.22
FNDC3B-201ENST00000336824 ABCC8Q09428 1581 aa13.66□□□□□ -0.22
FNDC3B-201ENST00000336824 HMGXB3Q12766 1538 aa13.66□□□□□ -0.22
FNDC3B-201ENST00000336824 NPM1P06748 294 aaKnown RBP eCLIP13.65□□□□□ -0.22
FNDC3B-201ENST00000336824 CUX2O14529 1486 aa13.63□□□□□ -0.23
FNDC3B-201ENST00000336824 FANCD2Q9BXW9 1451 aa13.6□□□□□ -0.23
FNDC3B-201ENST00000336824 CLIP1P30622 1438 aa13.6□□□□□ -0.23
FNDC3B-201ENST00000336824 SOGA1O94964 1423 aa13.59□□□□□ -0.23
FNDC3B-201ENST00000336824 ARID3CA6NKF2 412 aa13.54□□□□□ -0.24
FNDC3B-201ENST00000336824 CARMIL1Q5VZK9 1371 aa13.53□□□□□ -0.24
FNDC3B-201ENST00000336824 TNIKQ9UKE5 1360 aa13.51□□□□□ -0.25
FNDC3B-201ENST00000336824 TRIM52Q96A61 297 aa13.51□□□□□ -0.25
FNDC3B-201ENST00000336824 CEP162Q5TB80 1403 aa13.5□□□□□ -0.25
FNDC3B-201ENST00000336824 MTUS2Q5JR59 1369 aa13.48□□□□□ -0.25
FNDC3B-201ENST00000336824 PEG3Q9GZU2 1588 aa13.47□□□□□ -0.25
FNDC3B-201ENST00000336824 ZNF777Q9ULD5 760 aaPredicted RBP13.46□□□□□ -0.26
FNDC3B-201ENST00000336824 FHAD1B1AJZ9 1412 aa13.44□□□□□ -0.26
FNDC3B-201ENST00000336824 CFTRP13569 1480 aa13.44□□□□□ -0.26
FNDC3B-201ENST00000336824 LAMC3Q9Y6N6 1575 aa13.42□□□□□ -0.26
FNDC3B-201ENST00000336824 TDRD9Q8NDG6 1382 aaKnown RBP13.41□□□□□ -0.26
FNDC3B-201ENST00000336824 CARMIL2Q6F5E8 1435 aa13.39□□□□□ -0.27
FNDC3B-201ENST00000336824 PLEKHD1A6NEE1 506 aa13.39□□□□□ -0.27
FNDC3B-201ENST00000336824 PELP1Q8IZL8 1130 aaKnown RBP13.38□□□□□ -0.27
FNDC3B-201ENST00000336824 FGD5Q6ZNL6 1462 aa13.38□□□□□ -0.27
FNDC3B-201ENST00000336824 RAPGEF2Q9Y4G8 1499 aa13.37□□□□□ -0.27
FNDC3B-201ENST00000336824 MRC2Q9UBG0 1479 aa13.35□□□□□ -0.27
FNDC3B-201ENST00000336824 HRCP23327 699 aa13.34□□□□□ -0.27
FNDC3B-201ENST00000336824 ESF1Q9H501 851 aaKnown RBP13.33□□□□□ -0.28
FNDC3B-201ENST00000336824 GAPVD1Q14C86 1478 aa13.32□□□□□ -0.28
FNDC3B-201ENST00000336824 TSPY4P0CV99 314 aa13.32□□□□□ -0.28
FNDC3B-201ENST00000336824 TSPY10P0CW01 314 aa13.32□□□□□ -0.28
FNDC3B-201ENST00000336824 ACIN1Q9UKV3 1341 aaKnown RBP13.3□□□□□ -0.28
FNDC3B-201ENST00000336824 NESP48681 1621 aa13.3□□□□□ -0.28
FNDC3B-201ENST00000336824 TOP2BQ02880 1626 aa13.3□□□□□ -0.28
FNDC3B-201ENST00000336824 DNMBPQ6XZF7 1577 aa13.29□□□□□ -0.28
FNDC3B-201ENST00000336824 CENPBP07199 599 aaPredicted RBP13.29□□□□□ -0.28
FNDC3B-201ENST00000336824 FMN1Q68DA7 1419 aa13.29□□□□□ -0.28
FNDC3B-201ENST00000336824 NEUROD1Q13562 356 aa13.28□□□□□ -0.28
FNDC3B-201ENST00000336824 POLR3GLQ9BT43 218 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms