RNA–Protein interactions for RNA: ENST00000592741.5

PRKCSH-217, Transcript of protein kinase C substrate 80K-H, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PRKCSH, Length 2,100 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCSH-217ENST00000592741 NISCHQ9Y2I1 1504 aa35.36■■■■□ 3.25
PRKCSH-217ENST00000592741 CCDC180Q9P1Z9 1646 aa30.38■■■□□ 2.45
PRKCSH-217ENST00000592741 ZCCHC6Q5VYS8 1495 aaKnown RBP29.87■■■□□ 2.37
PRKCSH-217ENST00000592741 SHROOM4Q9ULL8 1493 aa29.63■■■□□ 2.33
PRKCSH-217ENST00000592741 DCAF1Q9Y4B6 1507 aa29.16■■■□□ 2.26
PRKCSH-217ENST00000592741 DCAF8L2P0C7V8 631 aa29.1■■■□□ 2.25
PRKCSH-217ENST00000592741 SUPT5HO00267 1087 aaKnown RBP28.91■■■□□ 2.22
PRKCSH-217ENST00000592741 MYO15BQ96JP2 1530 aa28.46■■■□□ 2.15
PRKCSH-217ENST00000592741 SCRIBQ14160 1630 aa28.2■■■□□ 2.1
PRKCSH-217ENST00000592741 ABCC9O60706 1549 aa28.15■■■□□ 2.1
PRKCSH-217ENST00000592741 NACADO15069 1562 aa28.1■■■□□ 2.09
PRKCSH-217ENST00000592741 CHIC1Q5VXU3 224 aa28.06■■■□□ 2.08
PRKCSH-217ENST00000592741 RSF1Q96T23 1441 aaPredicted RBP27.79■■■□□ 2.04
PRKCSH-217ENST00000592741 RB1CC1Q8TDY2 1594 aa27.69■■■□□ 2.02
PRKCSH-217ENST00000592741 CECR2Q9BXF3 1484 aa27.47■■□□□ 1.99
PRKCSH-217ENST00000592741 MROH2BQ7Z745 1585 aa27.39■■□□□ 1.98
PRKCSH-217ENST00000592741 WIZO95785 1651 aa27.24■■□□□ 1.95
PRKCSH-217ENST00000592741 BAZ1AQ9NRL2 1556 aaPredicted RBP27.23■■□□□ 1.95
PRKCSH-217ENST00000592741 UNC13AQ9UPW8 1703 aa27.21■■□□□ 1.95
PRKCSH-217ENST00000592741 LOC105371045A0A1W2PR82 267 aa27.08■■□□□ 1.93
PRKCSH-217ENST00000592741 TRIM41Q8WV44 630 aa27.07■■□□□ 1.92
PRKCSH-217ENST00000592741 SMARCA4P51532 1647 aa27.02■■□□□ 1.92
PRKCSH-217ENST00000592741 TOP2AP11388 1531 aaKnown RBP26.92■■□□□ 1.9
PRKCSH-217ENST00000592741 BICRAQ9NZM4 1560 aa26.86■■□□□ 1.89
PRKCSH-217ENST00000592741 EIF4G1Q04637 1599 aaKnown RBP26.83■■□□□ 1.89
PRKCSH-217ENST00000592741 PCGF6Q9BYE7 350 aa26.77■■□□□ 1.88
PRKCSH-217ENST00000592741 PABPN1Q86U42 306 aaKnown RBP eCLIP26.72■■□□□ 1.87
PRKCSH-217ENST00000592741 SMARCA2P51531 1590 aa26.71■■□□□ 1.87
PRKCSH-217ENST00000592741 CCDC88BA6NC98 1476 aa26.69■■□□□ 1.86
PRKCSH-217ENST00000592741 FAM9AQ8IZU1 332 aaPredicted RBP26.68■■□□□ 1.86
PRKCSH-217ENST00000592741 HRCP23327 699 aa26.65■■□□□ 1.86
PRKCSH-217ENST00000592741 PEG3Q9GZU2 1588 aa26.58■■□□□ 1.85
PRKCSH-217ENST00000592741 TRIM26Q12899 539 aaPredicted RBP26.48■■□□□ 1.83
PRKCSH-217ENST00000592741 ABCC8Q09428 1581 aa26.46■■□□□ 1.83
PRKCSH-217ENST00000592741 ATAD2BQ9ULI0 1458 aa26.36■■□□□ 1.81
PRKCSH-217ENST00000592741 EHMT2Q96KQ7 1210 aa26.35■■□□□ 1.81
PRKCSH-217ENST00000592741 BAZ1BQ9UIG0 1483 aaKnown RBP26.28■■□□□ 1.8
PRKCSH-217ENST00000592741 EEA1Q15075 1411 aa26.17■■□□□ 1.78
PRKCSH-217ENST00000592741 WRNQ14191 1432 aaPredicted RBP eCLIP26.14■■□□□ 1.77
PRKCSH-217ENST00000592741 SOGA1O94964 1423 aa26.13■■□□□ 1.77
PRKCSH-217ENST00000592741 SYNJ1O43426 1573 aa26.01■■□□□ 1.76
PRKCSH-217ENST00000592741 CSRNP3Q8WYN3 585 aa26■■□□□ 1.75
PRKCSH-217ENST00000592741 HMGXB3Q12766 1538 aa25.98■■□□□ 1.75
PRKCSH-217ENST00000592741 RUSC2Q8N2Y8 1516 aa25.98■■□□□ 1.75
PRKCSH-217ENST00000592741 PPARGC1BQ86YN6 1023 aaKnown RBP25.97■■□□□ 1.75
PRKCSH-217ENST00000592741 TNIKQ9UKE5 1360 aa25.97■■□□□ 1.75
PRKCSH-217ENST00000592741 NCAPD3P42695 1498 aa25.94■■□□□ 1.74
PRKCSH-217ENST00000592741 CEP162Q5TB80 1403 aa25.93■■□□□ 1.74
PRKCSH-217ENST00000592741 GOLGA3Q08378 1498 aa25.91■■□□□ 1.74
PRKCSH-217ENST00000592741 ZEB1P37275 1124 aaPredicted RBP25.86■■□□□ 1.73
PRKCSH-217ENST00000592741 KIF21BO75037 1637 aa25.81■■□□□ 1.72
PRKCSH-217ENST00000592741 UBTFP17480 764 aaKnown RBP25.81■■□□□ 1.72
PRKCSH-217ENST00000592741 TOP2BQ02880 1626 aa25.8■■□□□ 1.72
PRKCSH-217ENST00000592741 CEP164Q9UPV0 1460 aa25.8■■□□□ 1.72
PRKCSH-217ENST00000592741 BIVM-ERCC5R4GMW8 1640 aa25.75■■□□□ 1.71
PRKCSH-217ENST00000592741 CFTRP13569 1480 aa25.63■■□□□ 1.69
PRKCSH-217ENST00000592741 CUX1P39880 1505 aa25.55■■□□□ 1.68
PRKCSH-217ENST00000592741 RAPGEF2Q9Y4G8 1499 aa25.55■■□□□ 1.68
PRKCSH-217ENST00000592741 PRDM2Q13029 1718 aa25.54■■□□□ 1.68
PRKCSH-217ENST00000592741 CLIP1P30622 1438 aa25.54■■□□□ 1.68
PRKCSH-217ENST00000592741 ERICH3Q5RHP9 1530 aa25.46■■□□□ 1.67
PRKCSH-217ENST00000592741 TTBK1Q5TCY1 1321 aaPredicted RBP25.46■■□□□ 1.67
PRKCSH-217ENST00000592741 PRXQ9BXM0 1461 aa25.42■■□□□ 1.66
PRKCSH-217ENST00000592741 VPS8Q8N3P4 1428 aa25.41■■□□□ 1.66
PRKCSH-217ENST00000592741 CC2D2AQ9P2K1 1620 aa25.41■■□□□ 1.66
PRKCSH-217ENST00000592741 KIF27Q86VH2 1401 aa25.4■■□□□ 1.66
PRKCSH-217ENST00000592741 CADPSQ9ULU8 1353 aa25.38■■□□□ 1.65
PRKCSH-217ENST00000592741 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.35■■□□□ 1.65
PRKCSH-217ENST00000592741 CCER1Q8TC90 406 aaPredicted RBP25.34■■□□□ 1.65
PRKCSH-217ENST00000592741 APLP2Q06481 763 aa25.24■■□□□ 1.63
PRKCSH-217ENST00000592741 RANGAP1P46060 587 aaPredicted RBP25.22■■□□□ 1.63
PRKCSH-217ENST00000592741 CUX2O14529 1486 aa25.17■■□□□ 1.62
PRKCSH-217ENST00000592741 ARAP1Q96P48 1450 aa25.17■■□□□ 1.62
PRKCSH-217ENST00000592741 FGD5Q6ZNL6 1462 aa25.15■■□□□ 1.62
PRKCSH-217ENST00000592741 FANCD2Q9BXW9 1451 aa25.13■■□□□ 1.61
PRKCSH-217ENST00000592741 IGF1RP08069 1367 aa25.07■■□□□ 1.6
PRKCSH-217ENST00000592741 DNMBPQ6XZF7 1577 aa25.04■■□□□ 1.6
PRKCSH-217ENST00000592741 ARHGAP35Q9NRY4 1499 aa25■■□□□ 1.59
PRKCSH-217ENST00000592741 CARMIL1Q5VZK9 1371 aa24.99■■□□□ 1.59
PRKCSH-217ENST00000592741 HNRNPUL2Q1KMD3 747 aaKnown RBP24.98■■□□□ 1.59
PRKCSH-217ENST00000592741 TOPBP1Q92547 1522 aa24.95■■□□□ 1.58
PRKCSH-217ENST00000592741 NESP48681 1621 aa24.95■■□□□ 1.58
PRKCSH-217ENST00000592741 LAMC3Q9Y6N6 1575 aa24.93■■□□□ 1.58
PRKCSH-217ENST00000592741 ABCA10Q8WWZ4 1543 aa24.91■■□□□ 1.58
PRKCSH-217ENST00000592741 POLA1P09884 1462 aaPredicted RBP24.89■■□□□ 1.58
PRKCSH-217ENST00000592741 RAD54L2Q9Y4B4 1467 aa24.86■■□□□ 1.57
PRKCSH-217ENST00000592741 KANK4Q5T7N3 995 aaPredicted RBP24.85■■□□□ 1.57
PRKCSH-217ENST00000592741 CUL7Q14999 1698 aa24.8■■□□□ 1.56
PRKCSH-217ENST00000592741 RRBP1Q9P2E9 1410 aaKnown RBP24.78■■□□□ 1.56
PRKCSH-217ENST00000592741 URB2Q14146 1524 aaKnown RBP24.77■■□□□ 1.56
PRKCSH-217ENST00000592741 MAP3K1Q13233 1512 aa24.76■■□□□ 1.55
PRKCSH-217ENST00000592741 WDR97A6NE52 1622 aa24.75■■□□□ 1.55
PRKCSH-217ENST00000592741 PDS5BQ9NTI5 1447 aa24.74■■□□□ 1.55
PRKCSH-217ENST00000592741 TIAM1Q13009 1591 aa24.73■■□□□ 1.55
PRKCSH-217ENST00000592741 FHAD1B1AJZ9 1412 aa24.71■■□□□ 1.55
PRKCSH-217ENST00000592741 CTTNBP2Q8WZ74 1663 aa24.67■■□□□ 1.54
PRKCSH-217ENST00000592741 CCNB3Q8WWL7 1395 aa24.66■■□□□ 1.54
PRKCSH-217ENST00000592741 EFCAB5A4FU69 1503 aa24.66■■□□□ 1.54
PRKCSH-217ENST00000592741 DIEXFQ68CQ4 756 aaKnown RBP24.66■■□□□ 1.54
PRKCSH-217ENST00000592741 ABCA5Q8WWZ7 1642 aa24.64■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms