RNA–Protein interactions for RNA: ENST00000485627.1

CTSA-208, Transcript of cathepsin A, humanhuman

TSL 3

Gene CTSA, Length 695 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-208ENST00000485627 NISCHQ9Y2I1 1504 aa21.55■■□□□ 1.04
CTSA-208ENST00000485627 CHIC1Q5VXU3 224 aa19.55■□□□□ 0.72
CTSA-208ENST00000485627 AEBP2Q6ZN18 517 aaPredicted RBP19.43■□□□□ 0.7
CTSA-208ENST00000485627 ABCC9O60706 1549 aa19.2■□□□□ 0.66
CTSA-208ENST00000485627 CCDC180Q9P1Z9 1646 aa18.81■□□□□ 0.6
CTSA-208ENST00000485627 DNAJC5BQ9UF47 199 aa18.5■□□□□ 0.55
CTSA-208ENST00000485627 ZCCHC6Q5VYS8 1495 aaKnown RBP18.07■□□□□ 0.48
CTSA-208ENST00000485627 DCAF8L2P0C7V8 631 aa17.95■□□□□ 0.46
CTSA-208ENST00000485627 RB1CC1Q8TDY2 1594 aa17.9■□□□□ 0.46
CTSA-208ENST00000485627 PABPN1Q86U42 306 aaKnown RBP eCLIP17.86■□□□□ 0.457e-7■■■■□ 25.6
CTSA-208ENST00000485627 DCAF1Q9Y4B6 1507 aa17.82■□□□□ 0.44
CTSA-208ENST00000485627 NACADO15069 1562 aa17.65■□□□□ 0.42
CTSA-208ENST00000485627 MYO15BQ96JP2 1530 aa17.64■□□□□ 0.41
CTSA-208ENST00000485627 SHROOM4Q9ULL8 1493 aa17.57■□□□□ 0.4
CTSA-208ENST00000485627 UNC13AQ9UPW8 1703 aa17.55■□□□□ 0.4
CTSA-208ENST00000485627 BICRAQ9NZM4 1560 aa17.49■□□□□ 0.39
CTSA-208ENST00000485627 SCRIBQ14160 1630 aa17.3■□□□□ 0.36
CTSA-208ENST00000485627 PHF23Q9BUL5 403 aaPredicted RBP17.28■□□□□ 0.36
CTSA-208ENST00000485627 CECR2Q9BXF3 1484 aa17.27■□□□□ 0.36
CTSA-208ENST00000485627 CC2D2AQ9P2K1 1620 aa17.24■□□□□ 0.35
CTSA-208ENST00000485627 DNAJC5Q9H3Z4 198 aa17.18■□□□□ 0.34
CTSA-208ENST00000485627 EIF4G1Q04637 1599 aaKnown RBP17.07■□□□□ 0.32
CTSA-208ENST00000485627 SUPT5HO00267 1087 aaKnown RBP16.91■□□□□ 0.3
CTSA-208ENST00000485627 RSF1Q96T23 1441 aaPredicted RBP16.7■□□□□ 0.26
CTSA-208ENST00000485627 BAZ1AQ9NRL2 1556 aaPredicted RBP16.67■□□□□ 0.26
CTSA-208ENST00000485627 MROH2BQ7Z745 1585 aa16.63■□□□□ 0.25
CTSA-208ENST00000485627 CUX2O14529 1486 aa16.58■□□□□ 0.24
CTSA-208ENST00000485627 SMARCA4P51532 1647 aa16.56■□□□□ 0.24
CTSA-208ENST00000485627 ERCC6Q03468 1493 aa16.54■□□□□ 0.24
CTSA-208ENST00000485627 WIZO95785 1651 aa16.46■□□□□ 0.23
CTSA-208ENST00000485627 NESP48681 1621 aa16.38■□□□□ 0.21
CTSA-208ENST00000485627 SENP3Q9H4L4 574 aaPredicted RBP16.37■□□□□ 0.21
CTSA-208ENST00000485627 SMARCA2P51531 1590 aa16.35■□□□□ 0.21
CTSA-208ENST00000485627 PEG3Q9GZU2 1588 aa16.35■□□□□ 0.21
CTSA-208ENST00000485627 TRIM41Q8WV44 630 aa16.35■□□□□ 0.21
CTSA-208ENST00000485627 NCAPD3P42695 1498 aa16.34■□□□□ 0.21
CTSA-208ENST00000485627 ATAD2BQ9ULI0 1458 aa16.34■□□□□ 0.21
CTSA-208ENST00000485627 TOP2AP11388 1531 aaKnown RBP16.34■□□□□ 0.21
CTSA-208ENST00000485627 BAZ1BQ9UIG0 1483 aaKnown RBP16.28■□□□□ 0.2
CTSA-208ENST00000485627 THOC2Q8NI27 1593 aaKnown RBP16.2■□□□□ 0.18
CTSA-208ENST00000485627 HMGXB3Q12766 1538 aa16.18■□□□□ 0.18
CTSA-208ENST00000485627 CCDC88BA6NC98 1476 aa16.17■□□□□ 0.18
CTSA-208ENST00000485627 PLPPR3Q6T4P5 718 aa16.15■□□□□ 0.18
CTSA-208ENST00000485627 KIF21AQ7Z4S6 1674 aa16.06■□□□□ 0.16
CTSA-208ENST00000485627 LAMC3Q9Y6N6 1575 aa16■□□□□ 0.15
CTSA-208ENST00000485627 PDS5BQ9NTI5 1447 aa15.95■□□□□ 0.14
CTSA-208ENST00000485627 MRC2Q9UBG0 1479 aa15.89■□□□□ 0.13
CTSA-208ENST00000485627 CADPSQ9ULU8 1353 aa15.85■□□□□ 0.13
CTSA-208ENST00000485627 WDR62O43379 1518 aa15.84■□□□□ 0.13
CTSA-208ENST00000485627 CFTRP13569 1480 aa15.84■□□□□ 0.13
CTSA-208ENST00000485627 OSCARQ8IYS5 282 aa15.81■□□□□ 0.12
CTSA-208ENST00000485627 ABCC8Q09428 1581 aa15.78■□□□□ 0.12
CTSA-208ENST00000485627 WRNQ14191 1432 aaPredicted RBP eCLIP15.75■□□□□ 0.11
CTSA-208ENST00000485627 CEP164Q9UPV0 1460 aa15.73■□□□□ 0.11
CTSA-208ENST00000485627 FANCD2Q9BXW9 1451 aa15.7■□□□□ 0.1
CTSA-208ENST00000485627 PRDM2Q13029 1718 aa15.68■□□□□ 0.1
CTSA-208ENST00000485627 RIMBP3CA6NJZ7 1639 aa15.68■□□□□ 0.1
CTSA-208ENST00000485627 RIMBP3BA6NNM3 1639 aa15.68■□□□□ 0.1
CTSA-208ENST00000485627 RIMBP3Q9UFD9 1639 aa15.68■□□□□ 0.1
CTSA-208ENST00000485627 URB2Q14146 1524 aaKnown RBP15.63■□□□□ 0.09
CTSA-208ENST00000485627 FAM9AQ8IZU1 332 aaPredicted RBP15.62■□□□□ 0.09
CTSA-208ENST00000485627 SYNJ1O43426 1573 aa15.62■□□□□ 0.09
CTSA-208ENST00000485627 TOP2BQ02880 1626 aa15.58■□□□□ 0.09
CTSA-208ENST00000485627 ARHGEF11O15085 1522 aa15.58■□□□□ 0.08
CTSA-208ENST00000485627 CUX1P39880 1505 aa15.56■□□□□ 0.08
CTSA-208ENST00000485627 ZNF608Q9ULD9 1512 aaPredicted RBP15.56■□□□□ 0.08
CTSA-208ENST00000485627 BIVM-ERCC5R4GMW8 1640 aa15.55■□□□□ 0.08
CTSA-208ENST00000485627 CYB5RLQ6IPT4 315 aa15.55■□□□□ 0.08
CTSA-208ENST00000485627 EEA1Q15075 1411 aa15.52■□□□□ 0.08
CTSA-208ENST00000485627 TRHP20396 242 aaPredicted RBP15.52■□□□□ 0.08
CTSA-208ENST00000485627 SOGA1O94964 1423 aa15.5■□□□□ 0.07
CTSA-208ENST00000485627 LOC105371045A0A1W2PR82 267 aa15.48■□□□□ 0.07
CTSA-208ENST00000485627 DNMBPQ6XZF7 1577 aa15.47■□□□□ 0.07
CTSA-208ENST00000485627 CSRNP3Q8WYN3 585 aa15.45■□□□□ 0.06
CTSA-208ENST00000485627 TOPBP1Q92547 1522 aa15.44■□□□□ 0.06
CTSA-208ENST00000485627 FGD5Q6ZNL6 1462 aa15.42■□□□□ 0.06
CTSA-208ENST00000485627 ARAP1Q96P48 1450 aa15.42■□□□□ 0.06
CTSA-208ENST00000485627 IFT140Q96RY7 1462 aa15.41■□□□□ 0.06
CTSA-208ENST00000485627 RUSC2Q8N2Y8 1516 aa15.4■□□□□ 0.06
CTSA-208ENST00000485627 EHMT2Q96KQ7 1210 aa15.4■□□□□ 0.06
CTSA-208ENST00000485627 KIF27Q86VH2 1401 aa15.39■□□□□ 0.05
CTSA-208ENST00000485627 EIF4G3O43432 1585 aaKnown RBP15.36■□□□□ 0.05
CTSA-208ENST00000485627 FBLN2P98095 1184 aa15.36■□□□□ 0.05
CTSA-208ENST00000485627 POLA1P09884 1462 aaPredicted RBP15.35■□□□□ 0.05
CTSA-208ENST00000485627 CHD1O14646 1710 aa15.34■□□□□ 0.05
CTSA-208ENST00000485627 AQRO60306 1485 aaKnown RBP eCLIP15.34■□□□□ 0.055e-9■■■■□ 20.2
CTSA-208ENST00000485627 RAD54L2Q9Y4B4 1467 aa15.31■□□□□ 0.04
CTSA-208ENST00000485627 ABCA10Q8WWZ4 1543 aa15.29■□□□□ 0.04
CTSA-208ENST00000485627 GOLGA3Q08378 1498 aa15.28■□□□□ 0.04
CTSA-208ENST00000485627 UBTFP17480 764 aaKnown RBP15.28■□□□□ 0.04
CTSA-208ENST00000485627 KIF21BO75037 1637 aa15.25■□□□□ 0.03
CTSA-208ENST00000485627 TARBP1Q13395 1621 aaKnown RBP15.23■□□□□ 0.03
CTSA-208ENST00000485627 TNIKQ9UKE5 1360 aa15.23■□□□□ 0.03
CTSA-208ENST00000485627 IGF1RP08069 1367 aa15.22■□□□□ 0.03
CTSA-208ENST00000485627 PRXQ9BXM0 1461 aa15.2■□□□□ 0.02
CTSA-208ENST00000485627 TDRD9Q8NDG6 1382 aaKnown RBP15.2■□□□□ 0.02
CTSA-208ENST00000485627 ADRA2BP18089 450 aa15.18■□□□□ 0.02
CTSA-208ENST00000485627 CARMIL1Q5VZK9 1371 aa15.18■□□□□ 0.02
CTSA-208ENST00000485627 RAPGEF2Q9Y4G8 1499 aa15.18■□□□□ 0.02
CTSA-208ENST00000485627 ERICH3Q5RHP9 1530 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms