RNA–Protein interactions for RNA: ENST00000611967.4

PCSK6-215, Transcript of proprotein convertase subtilisin/kexin type 6, human

TSL 1 (best) BASIC

Gene PCSK6, Length 3,336 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PCSK6-215	ENST00000611967	NISCH	Q9Y2I1	1504 aa		42.43	■■■■■ 4.38
PCSK6-215	ENST00000611967	DCAF8L2	P0C7V8	631 aa		37.31	■■■■□ 3.56
PCSK6-215	ENST00000611967	SHROOM4	Q9ULL8	1493 aa		37.14	■■■■□ 3.54
PCSK6-215	ENST00000611967	SUPT5H	O00267	1087 aa	Known RBP	37.05	■■■■□ 3.52
PCSK6-215	ENST00000611967	HRC	P23327	699 aa		36.56	■■■■□ 3.44
PCSK6-215	ENST00000611967	PCGF6	Q9BYE7	350 aa		36.44	■■■■□ 3.42
PCSK6-215	ENST00000611967	PPARGC1B	Q86YN6	1023 aa	Known RBP	36.31	■■■■□ 3.4
PCSK6-215	ENST00000611967	CCDC180	Q9P1Z9	1646 aa		36.09	■■■■□ 3.37
PCSK6-215	ENST00000611967	ABCC9	O60706	1549 aa		35.84	■■■■□ 3.33
PCSK6-215	ENST00000611967	CHIC1	Q5VXU3	224 aa		35.75	■■■■□ 3.31
PCSK6-215	ENST00000611967	MYO15B	Q96JP2	1530 aa		35.66	■■■■□ 3.3
PCSK6-215	ENST00000611967	ZCCHC6	Q5VYS8	1495 aa	Known RBP	35.49	■■■■□ 3.27
PCSK6-215	ENST00000611967	LOC105371045	A0A1W2PR82	267 aa		35.34	■■■■□ 3.25
PCSK6-215	ENST00000611967	TRIM26	Q12899	539 aa	Predicted RBP	34.86	■■■■□ 3.17
PCSK6-215	ENST00000611967	PELP1	Q8IZL8	1130 aa	Known RBP	34.86	■■■■□ 3.17
PCSK6-215	ENST00000611967	EHMT2	Q96KQ7	1210 aa		34.74	■■■■□ 3.15
PCSK6-215	ENST00000611967	SCAF1	Q9H7N4	1312 aa	Known RBP	34.61	■■■■□ 3.13
PCSK6-215	ENST00000611967	SCRIB	Q14160	1630 aa		34.59	■■■■□ 3.13
PCSK6-215	ENST00000611967	DCAF1	Q9Y4B6	1507 aa		34.55	■■■■□ 3.12
PCSK6-215	ENST00000611967	FAM9A	Q8IZU1	332 aa	Predicted RBP	34.47	■■■■□ 3.11
PCSK6-215	ENST00000611967	ZEB1	P37275	1124 aa	Predicted RBP	34.42	■■■■□ 3.1
PCSK6-215	ENST00000611967	PABPN1	Q86U42	306 aa	Known RBP eCLIP	34.41	■■■■□ 3.1
PCSK6-215	ENST00000611967	TRIM41	Q8WV44	630 aa		34.01	■■■■□ 3.03
PCSK6-215	ENST00000611967	NACAD	O15069	1562 aa		33.95	■■■■□ 3.03
PCSK6-215	ENST00000611967	RB1CC1	Q8TDY2	1594 aa		33.87	■■■■□ 3.01
PCSK6-215	ENST00000611967	NEUROD1	Q13562	356 aa		33.85	■■■■□ 3.01
PCSK6-215	ENST00000611967	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	33.84	■■■■□ 3.01
PCSK6-215	ENST00000611967	CCER1	Q8TC90	406 aa	Predicted RBP	33.81	■■■■□ 3
PCSK6-215	ENST00000611967	ACIN1	Q9UKV3	1341 aa	Known RBP	33.8	■■■■□ 3
PCSK6-215	ENST00000611967	GTF3C3	Q9Y5Q9	886 aa		33.79	■■■■□ 3
PCSK6-215	ENST00000611967	TTBK1	Q5TCY1	1321 aa	Predicted RBP	33.78	■■■■□ 3
PCSK6-215	ENST00000611967	CECR2	Q9BXF3	1484 aa		33.63	■■■□□ 2.97
PCSK6-215	ENST00000611967	CENPB	P07199	599 aa	Predicted RBP	33.62	■■■□□ 2.97
PCSK6-215	ENST00000611967	DIEXF	Q68CQ4	756 aa	Known RBP	33.53	■■■□□ 2.96
PCSK6-215	ENST00000611967	YTHDC1	Q96MU7	727 aa	Known RBP	33.51	■■■□□ 2.96
PCSK6-215	ENST00000611967	MYT1	Q01538	1121 aa		33.35	■■■□□ 2.93
PCSK6-215	ENST00000611967	RSF1	Q96T23	1441 aa	Predicted RBP	33.32	■■■□□ 2.93
PCSK6-215	ENST00000611967	MROH2B	Q7Z745	1585 aa		33.18	■■■□□ 2.9
PCSK6-215	ENST00000611967	UNC13A	Q9UPW8	1703 aa		33.15	■■■□□ 2.9
PCSK6-215	ENST00000611967	WIZ	O95785	1651 aa		32.93	■■■□□ 2.86
PCSK6-215	ENST00000611967	BICRA	Q9NZM4	1560 aa		32.92	■■■□□ 2.86
PCSK6-215	ENST00000611967	ZNF316	A6NFI3	1004 aa	Predicted RBP	32.77	■■■□□ 2.84
PCSK6-215	ENST00000611967	MIER1	Q8N108	512 aa		32.67	■■■□□ 2.82
PCSK6-215	ENST00000611967	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	32.64	■■■□□ 2.82
PCSK6-215	ENST00000611967	HNRNPUL2	Q1KMD3	747 aa	Known RBP	32.59	■■■□□ 2.81
PCSK6-215	ENST00000611967	SMARCA4	P51532	1647 aa		32.53	■■■□□ 2.8
PCSK6-215	ENST00000611967	UBTF	P17480	764 aa	Known RBP	32.51	■■■□□ 2.8
PCSK6-215	ENST00000611967	RANGAP1	P46060	587 aa	Predicted RBP	32.32	■■■□□ 2.76
PCSK6-215	ENST00000611967	CCDC88B	A6NC98	1476 aa		32.25	■■■□□ 2.75
PCSK6-215	ENST00000611967	BAZ1B	Q9UIG0	1483 aa	Known RBP	32.19	■■■□□ 2.74
PCSK6-215	ENST00000611967	ATAD2B	Q9ULI0	1458 aa		32.19	■■■□□ 2.74
PCSK6-215	ENST00000611967	DNAJC5B	Q9UF47	199 aa		32.18	■■■□□ 2.74
PCSK6-215	ENST00000611967	CEP162	Q5TB80	1403 aa		32.11	■■■□□ 2.73
PCSK6-215	ENST00000611967	EIF4G1	Q04637	1599 aa	Known RBP	32.1	■■■□□ 2.73
PCSK6-215	ENST00000611967	TOP2A	P11388	1531 aa	Known RBP	32.06	■■■□□ 2.72
PCSK6-215	ENST00000611967	APLP2	Q06481	763 aa		32.02	■■■□□ 2.72
PCSK6-215	ENST00000611967	ABCC8	Q09428	1581 aa		32.01	■■■□□ 2.71
PCSK6-215	ENST00000611967	BCAN	Q96GW7	911 aa		31.98	■■■□□ 2.71
PCSK6-215	ENST00000611967	SUPT16H	Q9Y5B9	1047 aa	Known RBP	31.97	■■■□□ 2.71
PCSK6-215	ENST00000611967	SMARCA2	P51531	1590 aa		31.95	■■■□□ 2.7
PCSK6-215	ENST00000611967	CSRNP3	Q8WYN3	585 aa		31.91	■■■□□ 2.7
PCSK6-215	ENST00000611967	SOGA1	O94964	1423 aa		31.86	■■■□□ 2.69
PCSK6-215	ENST00000611967	WRN	Q14191	1432 aa	Predicted RBP eCLIP	31.78	■■■□□ 2.68
PCSK6-215	ENST00000611967	TSHZ2	Q9NRE2	1034 aa		31.75	■■■□□ 2.67
PCSK6-215	ENST00000611967	ANP32E	Q9BTT0	268 aa		31.74	■■■□□ 2.67
PCSK6-215	ENST00000611967	CC2D2A	Q9P2K1	1620 aa		31.73	■■■□□ 2.67
PCSK6-215	ENST00000611967	TNIK	Q9UKE5	1360 aa		31.73	■■■□□ 2.67
PCSK6-215	ENST00000611967	BCL11A	Q9H165	835 aa		31.65	■■■□□ 2.66
PCSK6-215	ENST00000611967	RUSC2	Q8N2Y8	1516 aa		31.63	■■■□□ 2.65
PCSK6-215	ENST00000611967	ITGAE	P38570	1179 aa		31.59	■■■□□ 2.65
PCSK6-215	ENST00000611967	NCAPD3	P42695	1498 aa		31.58	■■■□□ 2.65
PCSK6-215	ENST00000611967	KCNH8	Q96L42	1107 aa		31.52	■■■□□ 2.64
PCSK6-215	ENST00000611967	PEG3	Q9GZU2	1588 aa		31.51	■■■□□ 2.63
PCSK6-215	ENST00000611967	FKBP8	Q14318	412 aa		31.5	■■■□□ 2.63
PCSK6-215	ENST00000611967	CLSPN	Q9HAW4	1339 aa		31.43	■■■□□ 2.62
PCSK6-215	ENST00000611967	NES	P48681	1621 aa		31.41	■■■□□ 2.62
PCSK6-215	ENST00000611967	GOLGA3	Q08378	1498 aa		31.37	■■■□□ 2.61
PCSK6-215	ENST00000611967	CLIP1	P30622	1438 aa		31.36	■■■□□ 2.61
PCSK6-215	ENST00000611967	NEFL	P07196	543 aa		31.33	■■■□□ 2.61
PCSK6-215	ENST00000611967	HMGXB3	Q12766	1538 aa		31.25	■■■□□ 2.59
PCSK6-215	ENST00000611967	DDX10	Q13206	875 aa	Known RBP	31.23	■■■□□ 2.59
PCSK6-215	ENST00000611967	CADPS	Q9ULU8	1353 aa		31.2	■■■□□ 2.59
PCSK6-215	ENST00000611967	TRIM52	Q96A61	297 aa		31.19	■■■□□ 2.58
PCSK6-215	ENST00000611967	EEA1	Q15075	1411 aa		31.19	■■■□□ 2.58
PCSK6-215	ENST00000611967	SYNJ1	O43426	1573 aa		31.18	■■■□□ 2.58
PCSK6-215	ENST00000611967	HIRIP3	Q9BW71	556 aa	Predicted RBP	31.16	■■■□□ 2.58
PCSK6-215	ENST00000611967	DHX57	Q6P158	1386 aa	Known RBP	31.14	■■■□□ 2.58
PCSK6-215	ENST00000611967	RBM19	Q9Y4C8	960 aa	Known RBP	31.13	■■■□□ 2.57
PCSK6-215	ENST00000611967	ERICH6	Q7L0X2	663 aa		31.1	■■■□□ 2.57
PCSK6-215	ENST00000611967	VPS8	Q8N3P4	1428 aa		31.08	■■■□□ 2.57
PCSK6-215	ENST00000611967	KANK4	Q5T7N3	995 aa	Predicted RBP	31.05	■■■□□ 2.56
PCSK6-215	ENST00000611967	CFTR	P13569	1480 aa		31.05	■■■□□ 2.56
PCSK6-215	ENST00000611967	CEP164	Q9UPV0	1460 aa		31.02	■■■□□ 2.56
PCSK6-215	ENST00000611967	IRX6	P78412	446 aa	Predicted RBP	30.95	■■■□□ 2.54
PCSK6-215	ENST00000611967	FANCD2	Q9BXW9	1451 aa		30.94	■■■□□ 2.54
PCSK6-215	ENST00000611967	CUX1	P39880	1505 aa		30.89	■■■□□ 2.54
PCSK6-215	ENST00000611967	RAPGEF2	Q9Y4G8	1499 aa		30.88	■■■□□ 2.53
PCSK6-215	ENST00000611967	SIN3A	Q96ST3	1273 aa		30.85	■■■□□ 2.53
PCSK6-215	ENST00000611967	ATP1B4	Q9UN42	357 aa	Predicted RBP	30.81	■■■□□ 2.52
PCSK6-215	ENST00000611967	P3H3	Q8IVL6	736 aa		30.8	■■■□□ 2.52

Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms