Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC16.04■□□□□ 0.16
ZNF540Q8NDQ6 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF540Q8NDQ6 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
ZNF540Q8NDQ6 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
ZNF540Q8NDQ6 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
ZNF540Q8NDQ6 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
ZNF540Q8NDQ6 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF540Q8NDQ6 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC16.04■□□□□ 0.16
ZNF540Q8NDQ6 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF540Q8NDQ6 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC16.04■□□□□ 0.16
ZNF540Q8NDQ6 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF540Q8NDQ6 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC16.04■□□□□ 0.16
ZNF540Q8NDQ6 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC16.04■□□□□ 0.16
ZNF540Q8NDQ6 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF540Q8NDQ6 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF540Q8NDQ6 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF540Q8NDQ6 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF540Q8NDQ6 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
ZNF540Q8NDQ6 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF540Q8NDQ6 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZNF540Q8NDQ6 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC16.03■□□□□ 0.16
ZNF540Q8NDQ6 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
ZNF540Q8NDQ6 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
ZNF540Q8NDQ6 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ZNF540Q8NDQ6 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC16.03■□□□□ 0.16
ZNF540Q8NDQ6 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ZNF540Q8NDQ6 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
ZNF540Q8NDQ6 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC16.03■□□□□ 0.16
ZNF540Q8NDQ6 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ZNF540Q8NDQ6 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ZNF540Q8NDQ6 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC16.03■□□□□ 0.16
ZNF540Q8NDQ6 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC16.03■□□□□ 0.16
ZNF540Q8NDQ6 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
ZNF540Q8NDQ6 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
ZNF540Q8NDQ6 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ZNF540Q8NDQ6 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC16.03■□□□□ 0.16
ZNF540Q8NDQ6 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
ZNF540Q8NDQ6 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
ZNF540Q8NDQ6 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
ZNF540Q8NDQ6 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC16.03■□□□□ 0.16
ZNF540Q8NDQ6 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC16.03■□□□□ 0.16
ZNF540Q8NDQ6 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC16.03■□□□□ 0.16
ZNF540Q8NDQ6 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
ZNF540Q8NDQ6 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC16.03■□□□□ 0.16
ZNF540Q8NDQ6 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC16.03■□□□□ 0.16
ZNF540Q8NDQ6 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC16.03■□□□□ 0.16
ZNF540Q8NDQ6 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC16.03■□□□□ 0.16
ZNF540Q8NDQ6 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC16.03■□□□□ 0.16
ZNF540Q8NDQ6 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC16.03■□□□□ 0.16
ZNF540Q8NDQ6 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC16.03■□□□□ 0.16
ZNF540Q8NDQ6 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ZNF540Q8NDQ6 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
ZNF540Q8NDQ6 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC16.03■□□□□ 0.16
ZNF540Q8NDQ6 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ZNF540Q8NDQ6 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
ZNF540Q8NDQ6 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
ZNF540Q8NDQ6 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ZNF540Q8NDQ6 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
ZNF540Q8NDQ6 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ZNF540Q8NDQ6 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
ZNF540Q8NDQ6 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ZNF540Q8NDQ6 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
ZNF540Q8NDQ6 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
ZNF540Q8NDQ6 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
ZNF540Q8NDQ6 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
ZNF540Q8NDQ6 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
ZNF540Q8NDQ6 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
ZNF540Q8NDQ6 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC16.02■□□□□ 0.16
ZNF540Q8NDQ6 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC16.02■□□□□ 0.16
ZNF540Q8NDQ6 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
ZNF540Q8NDQ6 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC16.02■□□□□ 0.16
ZNF540Q8NDQ6 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC16.02■□□□□ 0.16
ZNF540Q8NDQ6 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
ZNF540Q8NDQ6 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC16.02■□□□□ 0.16
ZNF540Q8NDQ6 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC16.02■□□□□ 0.16
ZNF540Q8NDQ6 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
ZNF540Q8NDQ6 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC16.02■□□□□ 0.16
ZNF540Q8NDQ6 LINC00554-201ENST00000564841 3011 ntBASIC16.02■□□□□ 0.16
ZNF540Q8NDQ6 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
ZNF540Q8NDQ6 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC16.02■□□□□ 0.16
ZNF540Q8NDQ6 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
ZNF540Q8NDQ6 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
ZNF540Q8NDQ6 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
ZNF540Q8NDQ6 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
ZNF540Q8NDQ6 LYSMD4-203ENST00000378904 2122 ntBASIC16.02■□□□□ 0.16
ZNF540Q8NDQ6 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
ZNF540Q8NDQ6 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
ZNF540Q8NDQ6 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC16.02■□□□□ 0.16
ZNF540Q8NDQ6 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
ZNF540Q8NDQ6 DDX43P3-201ENST00000441064 443 ntBASIC16.02■□□□□ 0.16
ZNF540Q8NDQ6 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
ZNF540Q8NDQ6 AP003041.3-201ENST00000527151 707 ntBASIC16.02■□□□□ 0.16
ZNF540Q8NDQ6 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC16.02■□□□□ 0.16
ZNF540Q8NDQ6 MIR4674-201ENST00000582457 87 ntBASIC16.02■□□□□ 0.16
ZNF540Q8NDQ6 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC16.02■□□□□ 0.16
ZNF540Q8NDQ6 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC16.02■□□□□ 0.16
ZNF540Q8NDQ6 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
ZNF540Q8NDQ6 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC16.02■□□□□ 0.15
ZNF540Q8NDQ6 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
ZNF540Q8NDQ6 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms