RNA–Protein interactions for RNA: ENST00000631020.2

PNKP-224, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5 BASIC

Gene PNKP, Length 1,545 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-224ENST00000631020 NISCHQ9Y2I1 1504 aa45.25■■■■■ 4.83
PNKP-224ENST00000631020 CCDC180Q9P1Z9 1646 aa40.51■■■■■ 4.08
PNKP-224ENST00000631020 ABCC9O60706 1549 aa39.91■■■■□ 3.98
PNKP-224ENST00000631020 RB1CC1Q8TDY2 1594 aa38.3■■■■□ 3.72
PNKP-224ENST00000631020 NACADO15069 1562 aa38.17■■■■□ 3.7
PNKP-224ENST00000631020 MYO15BQ96JP2 1530 aa37.86■■■■□ 3.65
PNKP-224ENST00000631020 DCAF8L2P0C7V8 631 aa37.81■■■■□ 3.64
PNKP-224ENST00000631020 ZCCHC6Q5VYS8 1495 aaKnown RBP37.6■■■■□ 3.61
PNKP-224ENST00000631020 DCAF1Q9Y4B6 1507 aa37.5■■■■□ 3.59
PNKP-224ENST00000631020 UNC13AQ9UPW8 1703 aa37.42■■■■□ 3.58
PNKP-224ENST00000631020 PABPN1Q86U42 306 aaKnown RBP eCLIP37.15■■■■□ 3.545e-6■■■■□ 22.2
PNKP-224ENST00000631020 BICRAQ9NZM4 1560 aa37.14■■■■□ 3.54
PNKP-224ENST00000631020 DNAJC5BQ9UF47 199 aa37.01■■■■□ 3.52
PNKP-224ENST00000631020 SHROOM4Q9ULL8 1493 aa36.83■■■■□ 3.49
PNKP-224ENST00000631020 SCRIBQ14160 1630 aa36.78■■■■□ 3.48
PNKP-224ENST00000631020 EIF4G1Q04637 1599 aaKnown RBP36.2■■■■□ 3.38
PNKP-224ENST00000631020 CC2D2AQ9P2K1 1620 aa36.15■■■■□ 3.38
PNKP-224ENST00000631020 CECR2Q9BXF3 1484 aa35.95■■■■□ 3.35
PNKP-224ENST00000631020 NCAPD3P42695 1498 aa35.21■■■■□ 3.23
PNKP-224ENST00000631020 SMARCA4P51532 1647 aa35.21■■■■□ 3.23
PNKP-224ENST00000631020 BAZ1AQ9NRL2 1556 aaPredicted RBP35.13■■■■□ 3.21
PNKP-224ENST00000631020 ATAD2BQ9ULI0 1458 aa35.12■■■■□ 3.21
PNKP-224ENST00000631020 SMARCA2P51531 1590 aa35.1■■■■□ 3.21
PNKP-224ENST00000631020 HMGXB3Q12766 1538 aa35.01■■■■□ 3.2
PNKP-224ENST00000631020 PEG3Q9GZU2 1588 aa34.94■■■■□ 3.18
PNKP-224ENST00000631020 MROH2BQ7Z745 1585 aa34.81■■■■□ 3.16
PNKP-224ENST00000631020 BAZ1BQ9UIG0 1483 aaKnown RBP34.8■■■■□ 3.16
PNKP-224ENST00000631020 ERCC6Q03468 1493 aa34.46■■■■□ 3.11
PNKP-224ENST00000631020 WIZO95785 1651 aa34.42■■■■□ 3.1
PNKP-224ENST00000631020 NESP48681 1621 aa34.4■■■■□ 3.1
PNKP-224ENST00000631020 LAMC3Q9Y6N6 1575 aa34.37■■■■□ 3.09
PNKP-224ENST00000631020 CUX2O14529 1486 aa34.36■■■■□ 3.09
PNKP-224ENST00000631020 RSF1Q96T23 1441 aaPredicted RBP34.26■■■■□ 3.08
PNKP-224ENST00000631020 CADPSQ9ULU8 1353 aa34.12■■■■□ 3.05
PNKP-224ENST00000631020 PDS5BQ9NTI5 1447 aa34.12■■■■□ 3.05
PNKP-224ENST00000631020 TOP2AP11388 1531 aaKnown RBP34.07■■■■□ 3.04
PNKP-224ENST00000631020 THOC2Q8NI27 1593 aaKnown RBP34.06■■■■□ 3.04
PNKP-224ENST00000631020 KIF21AQ7Z4S6 1674 aa34.04■■■■□ 3.04
PNKP-224ENST00000631020 CFTRP13569 1480 aa33.84■■■■□ 3.01
PNKP-224ENST00000631020 MRC2Q9UBG0 1479 aa33.79■■■■□ 3
PNKP-224ENST00000631020 DNAJC5Q9H3Z4 198 aa33.78■■■■□ 3
PNKP-224ENST00000631020 CEP164Q9UPV0 1460 aa33.74■■■□□ 2.99
PNKP-224ENST00000631020 WDR62O43379 1518 aa33.72■■■□□ 2.99
PNKP-224ENST00000631020 FANCD2Q9BXW9 1451 aa33.71■■■□□ 2.99
PNKP-224ENST00000631020 CCDC88BA6NC98 1476 aa33.63■■■□□ 2.97
PNKP-224ENST00000631020 PRDM2Q13029 1718 aa33.62■■■□□ 2.97
PNKP-224ENST00000631020 SUPT5HO00267 1087 aaKnown RBP33.52■■■□□ 2.96
PNKP-224ENST00000631020 URB2Q14146 1524 aaKnown RBP33.4■■■□□ 2.94
PNKP-224ENST00000631020 ABCC8Q09428 1581 aa33.17■■■□□ 2.9
PNKP-224ENST00000631020 TOPBP1Q92547 1522 aa33.13■■■□□ 2.89
PNKP-224ENST00000631020 DNMBPQ6XZF7 1577 aa33.08■■■□□ 2.89
PNKP-224ENST00000631020 IFT140Q96RY7 1462 aa33.06■■■□□ 2.88
PNKP-224ENST00000631020 ZNF608Q9ULD9 1512 aaPredicted RBP32.88■■■□□ 2.85
PNKP-224ENST00000631020 TARBP1Q13395 1621 aaKnown RBP32.84■■■□□ 2.85
PNKP-224ENST00000631020 POLA1P09884 1462 aaPredicted RBP32.82■■■□□ 2.84
PNKP-224ENST00000631020 EIF4G3O43432 1585 aaKnown RBP32.78■■■□□ 2.84
PNKP-224ENST00000631020 OSCARQ8IYS5 282 aa32.77■■■□□ 2.84
PNKP-224ENST00000631020 CUX1P39880 1505 aa32.69■■■□□ 2.82
PNKP-224ENST00000631020 SOGA1O94964 1423 aa32.65■■■□□ 2.82
PNKP-224ENST00000631020 FGD5Q6ZNL6 1462 aa32.65■■■□□ 2.82
PNKP-224ENST00000631020 WDR97A6NE52 1622 aa32.64■■■□□ 2.82
PNKP-224ENST00000631020 AQRO60306 1485 aaKnown RBP eCLIP32.63■■■□□ 2.812e-6■■■■□ 20.5
PNKP-224ENST00000631020 RAD54L2Q9Y4B4 1467 aa32.62■■■□□ 2.81
PNKP-224ENST00000631020 TDRD9Q8NDG6 1382 aaKnown RBP32.48■■■□□ 2.79
PNKP-224ENST00000631020 CHD1O14646 1710 aa32.46■■■□□ 2.79
PNKP-224ENST00000631020 ABCA10Q8WWZ4 1543 aa32.36■■■□□ 2.77
PNKP-224ENST00000631020 GRIN2BQ13224 1484 aa32.36■■■□□ 2.77
PNKP-224ENST00000631020 MAGI1Q96QZ7 1491 aaPredicted RBP32.36■■■□□ 2.77
PNKP-224ENST00000631020 BIVM-ERCC5R4GMW8 1640 aa32.35■■■□□ 2.77
PNKP-224ENST00000631020 TOP2BQ02880 1626 aa32.35■■■□□ 2.77
PNKP-224ENST00000631020 SNAPC4Q5SXM2 1469 aa32.34■■■□□ 2.77
PNKP-224ENST00000631020 TRIM41Q8WV44 630 aa32.34■■■□□ 2.77
PNKP-224ENST00000631020 WRNQ14191 1432 aaPredicted RBP eCLIP32.32■■■□□ 2.77
PNKP-224ENST00000631020 RIMBP3CA6NJZ7 1639 aa32.31■■■□□ 2.76
PNKP-224ENST00000631020 RIMBP3BA6NNM3 1639 aa32.31■■■□□ 2.76
PNKP-224ENST00000631020 RIMBP3Q9UFD9 1639 aa32.31■■■□□ 2.76
PNKP-224ENST00000631020 GAPVD1Q14C86 1478 aa32.29■■■□□ 2.76
PNKP-224ENST00000631020 ABCA5Q8WWZ7 1642 aa32.28■■■□□ 2.76
PNKP-224ENST00000631020 PBRM1Q86U86 1689 aa32.28■■■□□ 2.76
PNKP-224ENST00000631020 FBLN2P98095 1184 aa32.27■■■□□ 2.76
PNKP-224ENST00000631020 ARHGEF11O15085 1522 aa32.27■■■□□ 2.76
PNKP-224ENST00000631020 SYNJ1O43426 1573 aa32.26■■■□□ 2.75
PNKP-224ENST00000631020 SYNJ2O15056 1496 aa32.22■■■□□ 2.75
PNKP-224ENST00000631020 CHMP7Q8WUX9 453 aaPredicted RBP32.17■■■□□ 2.74
PNKP-224ENST00000631020 CLASP1Q7Z460 1538 aa32.13■■■□□ 2.73
PNKP-224ENST00000631020 ADAMTS12P58397 1594 aa31.99■■■□□ 2.71
PNKP-224ENST00000631020 ERICH3Q5RHP9 1530 aa31.99■■■□□ 2.71
PNKP-224ENST00000631020 ARAP1Q96P48 1450 aa31.96■■■□□ 2.71
PNKP-224ENST00000631020 GRIN2AQ12879 1464 aa31.94■■■□□ 2.7
PNKP-224ENST00000631020 CYB5RLQ6IPT4 315 aa31.91■■■□□ 2.7
PNKP-224ENST00000631020 FHAD1B1AJZ9 1412 aa31.91■■■□□ 2.7
PNKP-224ENST00000631020 NUP160Q12769 1436 aa31.84■■■□□ 2.69
PNKP-224ENST00000631020 CEP170Q5SW79 1584 aa31.79■■■□□ 2.68
PNKP-224ENST00000631020 KIF27Q86VH2 1401 aa31.7■■■□□ 2.66
PNKP-224ENST00000631020 SHROOM2Q13796 1616 aa31.68■■■□□ 2.66
PNKP-224ENST00000631020 CUL7Q14999 1698 aa31.62■■■□□ 2.65
PNKP-224ENST00000631020 CHIC1Q5VXU3 224 aa31.6■■■□□ 2.65
PNKP-224ENST00000631020 IGF1RP08069 1367 aa31.6■■■□□ 2.65
PNKP-224ENST00000631020 ERCC6L2Q5T890 1561 aa31.56■■■□□ 2.64
PNKP-224ENST00000631020 RUSC2Q8N2Y8 1516 aa31.53■■■□□ 2.64
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms