RNA–Protein interactions for RNA: ENST00000392185.7

SNX9-201, Transcript of sorting nexin 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX9, Length 4,198 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9-201ENST00000392185 NISCHQ9Y2I1 1504 aa30.96■■■□□ 2.55
SNX9-201ENST00000392185 DCAF8L2P0C7V8 631 aa30.15■■■□□ 2.42
SNX9-201ENST00000392185 SHROOM4Q9ULL8 1493 aa28.67■■■□□ 2.18
SNX9-201ENST00000392185 SUPT5HO00267 1087 aaKnown RBP28.59■■■□□ 2.17
SNX9-201ENST00000392185 EHMT2Q96KQ7 1210 aa27.28■■□□□ 1.96
SNX9-201ENST00000392185 FAM9AQ8IZU1 332 aaPredicted RBP26.84■■□□□ 1.89
SNX9-201ENST00000392185 ABCC9O60706 1549 aa26.54■■□□□ 1.84
SNX9-201ENST00000392185 TRIM41Q8WV44 630 aa26.42■■□□□ 1.82
SNX9-201ENST00000392185 TTBK1Q5TCY1 1321 aaPredicted RBP26.2■■□□□ 1.78
SNX9-201ENST00000392185 RANGAP1P46060 587 aaPredicted RBP26.15■■□□□ 1.78
SNX9-201ENST00000392185 PABPN1Q86U42 306 aaKnown RBP eCLIP26.1■■□□□ 1.77
SNX9-201ENST00000392185 PCGF6Q9BYE7 350 aa26.04■■□□□ 1.76
SNX9-201ENST00000392185 APLP2Q06481 763 aa26.01■■□□□ 1.75
SNX9-201ENST00000392185 CHIC1Q5VXU3 224 aa25.94■■□□□ 1.74
SNX9-201ENST00000392185 UBTFP17480 764 aaKnown RBP25.87■■□□□ 1.73
SNX9-201ENST00000392185 LOC105371045A0A1W2PR82 267 aa25.77■■□□□ 1.72
SNX9-201ENST00000392185 ZCCHC6Q5VYS8 1495 aaKnown RBP25.7■■□□□ 1.7
SNX9-201ENST00000392185 PPARGC1BQ86YN6 1023 aaKnown RBP25.66■■□□□ 1.7
SNX9-201ENST00000392185 ATP1B4Q9UN42 357 aaPredicted RBP25.61■■□□□ 1.69
SNX9-201ENST00000392185 CCDC180Q9P1Z9 1646 aa25.55■■□□□ 1.68
SNX9-201ENST00000392185 SCRIBQ14160 1630 aa25.39■■□□□ 1.66
SNX9-201ENST00000392185 CCER1Q8TC90 406 aaPredicted RBP25.25■■□□□ 1.63
SNX9-201ENST00000392185 TRIM26Q12899 539 aaPredicted RBP25.06■■□□□ 1.6
SNX9-201ENST00000392185 ITGAEP38570 1179 aa24.92■■□□□ 1.58
SNX9-201ENST00000392185 ZEB1P37275 1124 aaPredicted RBP24.89■■□□□ 1.57
SNX9-201ENST00000392185 HNRNPUL2Q1KMD3 747 aaKnown RBP24.83■■□□□ 1.57
SNX9-201ENST00000392185 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.82■■□□□ 1.56
SNX9-201ENST00000392185 RB1CC1Q8TDY2 1594 aa24.77■■□□□ 1.56
SNX9-201ENST00000392185 RSF1Q96T23 1441 aaPredicted RBP24.69■■□□□ 1.54
SNX9-201ENST00000392185 NACADO15069 1562 aa24.68■■□□□ 1.54
SNX9-201ENST00000392185 HRCP23327 699 aa24.65■■□□□ 1.54
SNX9-201ENST00000392185 CSRNP3Q8WYN3 585 aa24.65■■□□□ 1.54
SNX9-201ENST00000392185 DCAF1Q9Y4B6 1507 aa24.53■■□□□ 1.52
SNX9-201ENST00000392185 CECR2Q9BXF3 1484 aa24.5■■□□□ 1.51
SNX9-201ENST00000392185 FBLN2P98095 1184 aa24.49■■□□□ 1.51
SNX9-201ENST00000392185 P3H3Q8IVL6 736 aa24.46■■□□□ 1.51
SNX9-201ENST00000392185 FAM50AQ14320 339 aaKnown RBP24.36■■□□□ 1.49
SNX9-201ENST00000392185 MYT1LQ9UL68 1186 aa24.33■■□□□ 1.49
SNX9-201ENST00000392185 YTHDC1Q96MU7 727 aaKnown RBP24.29■■□□□ 1.48
SNX9-201ENST00000392185 ARID3CA6NKF2 412 aa24.28■■□□□ 1.48
SNX9-201ENST00000392185 MYO15BQ96JP2 1530 aa24.25■■□□□ 1.47
SNX9-201ENST00000392185 CENPBP07199 599 aaPredicted RBP24.19■■□□□ 1.46
SNX9-201ENST00000392185 BAZ1BQ9UIG0 1483 aaKnown RBP24.14■■□□□ 1.46
SNX9-201ENST00000392185 BAZ1AQ9NRL2 1556 aaPredicted RBP24.13■■□□□ 1.45
SNX9-201ENST00000392185 MROH2BQ7Z745 1585 aa24.12■■□□□ 1.45
SNX9-201ENST00000392185 POLR3GLQ9BT43 218 aa24.04■■□□□ 1.44
SNX9-201ENST00000392185 PELP1Q8IZL8 1130 aaKnown RBP24■■□□□ 1.43
SNX9-201ENST00000392185 TRIM52Q96A61 297 aa23.99■■□□□ 1.43
SNX9-201ENST00000392185 WRNQ14191 1432 aaPredicted RBP eCLIP23.99■■□□□ 1.439e-6■■■■■ 50.1
SNX9-201ENST00000392185 NEUROD1Q13562 356 aa23.98■■□□□ 1.43
SNX9-201ENST00000392185 CNGB1Q14028 1251 aaPredicted RBP23.98■■□□□ 1.43
SNX9-201ENST00000392185 CCDC88BA6NC98 1476 aa23.8■■□□□ 1.4
SNX9-201ENST00000392185 DIEXFQ68CQ4 756 aaKnown RBP23.8■■□□□ 1.4
SNX9-201ENST00000392185 ZNF777Q9ULD5 760 aaPredicted RBP23.8■■□□□ 1.4
SNX9-201ENST00000392185 CLIP1P30622 1438 aa23.77■■□□□ 1.4
SNX9-201ENST00000392185 WIZO95785 1651 aa23.74■■□□□ 1.39
SNX9-201ENST00000392185 SOGA1O94964 1423 aa23.71■■□□□ 1.39
SNX9-201ENST00000392185 CEP162Q5TB80 1403 aa23.69■■□□□ 1.38
SNX9-201ENST00000392185 CHMP7Q8WUX9 453 aaPredicted RBP23.69■■□□□ 1.38
SNX9-201ENST00000392185 EEA1Q15075 1411 aa23.68■■□□□ 1.38
SNX9-201ENST00000392185 ZNF326Q5BKZ1 582 aaKnown RBP23.67■■□□□ 1.38
SNX9-201ENST00000392185 ABCC8Q09428 1581 aa23.65■■□□□ 1.38
SNX9-201ENST00000392185 CDK11AQ9UQ88 783 aaPredicted RBP23.65■■□□□ 1.38
SNX9-201ENST00000392185 GOLGA3Q08378 1498 aa23.64■■□□□ 1.37
SNX9-201ENST00000392185 KIF27Q86VH2 1401 aa23.62■■□□□ 1.37
SNX9-201ENST00000392185 NEFLP07196 543 aa23.59■■□□□ 1.37
SNX9-201ENST00000392185 CHIC2Q9UKJ5 165 aa23.57■■□□□ 1.36
SNX9-201ENST00000392185 TNIKQ9UKE5 1360 aa23.54■■□□□ 1.36
SNX9-201ENST00000392185 SMARCA2P51531 1590 aa23.53■■□□□ 1.36
SNX9-201ENST00000392185 ATAD2BQ9ULI0 1458 aa23.5■■□□□ 1.35
SNX9-201ENST00000392185 MTUS2Q5JR59 1369 aa23.49■■□□□ 1.35
SNX9-201ENST00000392185 CEP164Q9UPV0 1460 aa23.49■■□□□ 1.35
SNX9-201ENST00000392185 ZNF316A6NFI3 1004 aaPredicted RBP23.48■■□□□ 1.35
SNX9-201ENST00000392185 TOP2AP11388 1531 aaKnown RBP23.47■■□□□ 1.35
SNX9-201ENST00000392185 CUX2O14529 1486 aa23.45■■□□□ 1.34
SNX9-201ENST00000392185 SLC4A1APQ9BWU0 796 aaKnown RBP23.44■■□□□ 1.34
SNX9-201ENST00000392185 SMARCA4P51532 1647 aa23.43■■□□□ 1.34
SNX9-201ENST00000392185 ERCC6Q03468 1493 aa23.4■■□□□ 1.34
SNX9-201ENST00000392185 CARMIL1Q5VZK9 1371 aa23.37■■□□□ 1.33
SNX9-201ENST00000392185 TDRD9Q8NDG6 1382 aaKnown RBP23.32■■□□□ 1.32
SNX9-201ENST00000392185 CADPSQ9ULU8 1353 aa23.31■■□□□ 1.32
SNX9-201ENST00000392185 NPM1P06748 294 aaKnown RBP eCLIP23.3■■□□□ 1.32
SNX9-201ENST00000392185 RRP7BPQ9NSQ0 103 aa23.28■■□□□ 1.32
SNX9-201ENST00000392185 KCNH8Q96L42 1107 aa23.27■■□□□ 1.32
SNX9-201ENST00000392185 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.23■■□□□ 1.312e-6■■□□□ 11.4
SNX9-201ENST00000392185 TONSLQ96HA7 1378 aa23.21■■□□□ 1.31
SNX9-201ENST00000392185 RUSC2Q8N2Y8 1516 aa23.2■■□□□ 1.31
SNX9-201ENST00000392185 TSPY4P0CV99 314 aa23.2■■□□□ 1.3
SNX9-201ENST00000392185 TSPY10P0CW01 314 aa23.2■■□□□ 1.3
SNX9-201ENST00000392185 ANP32CO43423 234 aa23.2■■□□□ 1.3
SNX9-201ENST00000392185 PDS5BQ9NTI5 1447 aa23.19■■□□□ 1.3
SNX9-201ENST00000392185 PLEKHD1A6NEE1 506 aa23.18■■□□□ 1.3
SNX9-201ENST00000392185 HIRIP3Q9BW71 556 aaPredicted RBP23.12■■□□□ 1.29
SNX9-201ENST00000392185 KANK4Q5T7N3 995 aaPredicted RBP23.12■■□□□ 1.29
SNX9-201ENST00000392185 CHGAP10645 457 aaKnown RBP23.1■■□□□ 1.29
SNX9-201ENST00000392185 DDX10Q13206 875 aaKnown RBP23.09■■□□□ 1.29
SNX9-201ENST00000392185 EIF4G1Q04637 1599 aaKnown RBP23.08■■□□□ 1.29
SNX9-201ENST00000392185 CFDP1Q9UEE9 299 aaPredicted RBP23.06■■□□□ 1.28
SNX9-201ENST00000392185 ERICH6Q7L0X2 663 aa23.04■■□□□ 1.28
SNX9-201ENST00000392185 VPS8Q8N3P4 1428 aa23.03■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms