RNA–Protein interactions for RNA: ENST00000564841.1

LINC00554-201, long intergenic non-protein coding RNA 554, humanhuman

BASIC

Gene LINC00554, Length 3,011 nt, Biotype antisense RNA.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00554-201ENST00000564841 NISCHQ9Y2I1 1504 aa32.84■■■□□ 2.85
LINC00554-201ENST00000564841 DCAF8L2P0C7V8 631 aa28.18■■■□□ 2.1
LINC00554-201ENST00000564841 SHROOM4Q9ULL8 1493 aa28.14■■■□□ 2.1
LINC00554-201ENST00000564841 CCDC180Q9P1Z9 1646 aa27.96■■■□□ 2.07
LINC00554-201ENST00000564841 HRCP23327 699 aa27.59■■■□□ 2.01
LINC00554-201ENST00000564841 ZCCHC6Q5VYS8 1495 aaKnown RBP27.58■■■□□ 2.01
LINC00554-201ENST00000564841 SUPT5HO00267 1087 aaKnown RBP27.57■■■□□ 2
LINC00554-201ENST00000564841 PPARGC1BQ86YN6 1023 aaKnown RBP27.4■■□□□ 1.98
LINC00554-201ENST00000564841 PCGF6Q9BYE7 350 aa27.2■■□□□ 1.94
LINC00554-201ENST00000564841 ABCC9O60706 1549 aa27■■□□□ 1.91
LINC00554-201ENST00000564841 MYO15BQ96JP2 1530 aa26.88■■□□□ 1.89
LINC00554-201ENST00000564841 DCAF1Q9Y4B6 1507 aa26.68■■□□□ 1.86
LINC00554-201ENST00000564841 CHIC1Q5VXU3 224 aa26.63■■□□□ 1.85
LINC00554-201ENST00000564841 SCRIBQ14160 1630 aa26.52■■□□□ 1.84
LINC00554-201ENST00000564841 PELP1Q8IZL8 1130 aaKnown RBP26.48■■□□□ 1.83
LINC00554-201ENST00000564841 SCAF1Q9H7N4 1312 aaKnown RBP26.34■■□□□ 1.81
LINC00554-201ENST00000564841 LOC105371045A0A1W2PR82 267 aa26.28■■□□□ 1.8
LINC00554-201ENST00000564841 NACADO15069 1562 aa26.12■■□□□ 1.77
LINC00554-201ENST00000564841 TRIM26Q12899 539 aaPredicted RBP26■■□□□ 1.75
LINC00554-201ENST00000564841 RB1CC1Q8TDY2 1594 aa25.91■■□□□ 1.74
LINC00554-201ENST00000564841 PABPN1Q86U42 306 aaKnown RBP eCLIP25.87■■□□□ 1.73
LINC00554-201ENST00000564841 RSF1Q96T23 1441 aaPredicted RBP25.85■■□□□ 1.73
LINC00554-201ENST00000564841 CECR2Q9BXF3 1484 aa25.85■■□□□ 1.73
LINC00554-201ENST00000564841 EHMT2Q96KQ7 1210 aa25.82■■□□□ 1.72
LINC00554-201ENST00000564841 FAM9AQ8IZU1 332 aaPredicted RBP25.64■■□□□ 1.69
LINC00554-201ENST00000564841 ZEB1P37275 1124 aaPredicted RBP25.63■■□□□ 1.69
LINC00554-201ENST00000564841 MROH2BQ7Z745 1585 aa25.61■■□□□ 1.69
LINC00554-201ENST00000564841 NEUROD1Q13562 356 aa25.59■■□□□ 1.69
LINC00554-201ENST00000564841 ACIN1Q9UKV3 1341 aaKnown RBP25.51■■□□□ 1.67
LINC00554-201ENST00000564841 GTF3C3Q9Y5Q9 886 aa25.45■■□□□ 1.66
LINC00554-201ENST00000564841 WIZO95785 1651 aa25.44■■□□□ 1.66
LINC00554-201ENST00000564841 UNC13AQ9UPW8 1703 aa25.43■■□□□ 1.66
LINC00554-201ENST00000564841 TRIM41Q8WV44 630 aa25.36■■□□□ 1.65
LINC00554-201ENST00000564841 MYT1Q01538 1121 aa25.34■■□□□ 1.65
LINC00554-201ENST00000564841 BAZ1AQ9NRL2 1556 aaPredicted RBP25.26■■□□□ 1.63
LINC00554-201ENST00000564841 BICRAQ9NZM4 1560 aa25.19■■□□□ 1.62
LINC00554-201ENST00000564841 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.18■■□□□ 1.62
LINC00554-201ENST00000564841 SMARCA4P51532 1647 aa25.11■■□□□ 1.61
LINC00554-201ENST00000564841 DIEXFQ68CQ4 756 aaKnown RBP25.05■■□□□ 1.6
LINC00554-201ENST00000564841 CENPBP07199 599 aaPredicted RBP25.04■■□□□ 1.6
LINC00554-201ENST00000564841 CCER1Q8TC90 406 aaPredicted RBP25■■□□□ 1.59
LINC00554-201ENST00000564841 TTBK1Q5TCY1 1321 aaPredicted RBP24.95■■□□□ 1.58
LINC00554-201ENST00000564841 YTHDC1Q96MU7 727 aaKnown RBP24.92■■□□□ 1.58
LINC00554-201ENST00000564841 CCDC88BA6NC98 1476 aa24.92■■□□□ 1.58
LINC00554-201ENST00000564841 TOP2AP11388 1531 aaKnown RBP24.88■■□□□ 1.57
LINC00554-201ENST00000564841 SMARCA2P51531 1590 aa24.77■■□□□ 1.56
LINC00554-201ENST00000564841 ABCC8Q09428 1581 aa24.76■■□□□ 1.55
LINC00554-201ENST00000564841 ATAD2BQ9ULI0 1458 aa24.7■■□□□ 1.54
LINC00554-201ENST00000564841 BAZ1BQ9UIG0 1483 aaKnown RBP24.67■■□□□ 1.54
LINC00554-201ENST00000564841 EIF4G1Q04637 1599 aaKnown RBP24.52■■□□□ 1.52
LINC00554-201ENST00000564841 MIER1Q8N108 512 aa24.49■■□□□ 1.51
LINC00554-201ENST00000564841 PEG3Q9GZU2 1588 aa24.46■■□□□ 1.51
LINC00554-201ENST00000564841 ZNF316A6NFI3 1004 aaPredicted RBP24.45■■□□□ 1.5
LINC00554-201ENST00000564841 SOGA1O94964 1423 aa24.43■■□□□ 1.5
LINC00554-201ENST00000564841 WRNQ14191 1432 aaPredicted RBP eCLIP24.36■■□□□ 1.49
LINC00554-201ENST00000564841 RUSC2Q8N2Y8 1516 aa24.36■■□□□ 1.49
LINC00554-201ENST00000564841 UBTFP17480 764 aaKnown RBP24.35■■□□□ 1.49
LINC00554-201ENST00000564841 RANGAP1P46060 587 aaPredicted RBP24.32■■□□□ 1.48
LINC00554-201ENST00000564841 CSRNP3Q8WYN3 585 aa24.27■■□□□ 1.48
LINC00554-201ENST00000564841 NCAPD3P42695 1498 aa24.24■■□□□ 1.47
LINC00554-201ENST00000564841 BCL11AQ9H165 835 aa24.22■■□□□ 1.47
LINC00554-201ENST00000564841 SYNJ1O43426 1573 aa24.18■■□□□ 1.46
LINC00554-201ENST00000564841 SUPT16HQ9Y5B9 1047 aaKnown RBP24.1■■□□□ 1.45
LINC00554-201ENST00000564841 HMGXB3Q12766 1538 aa24.09■■□□□ 1.45
LINC00554-201ENST00000564841 ANP32EQ9BTT0 268 aa24.08■■□□□ 1.44
LINC00554-201ENST00000564841 CC2D2AQ9P2K1 1620 aa24.08■■□□□ 1.44
LINC00554-201ENST00000564841 TSHZ2Q9NRE2 1034 aa24.06■■□□□ 1.44
LINC00554-201ENST00000564841 DNAJC5BQ9UF47 199 aa24.02■■□□□ 1.44
LINC00554-201ENST00000564841 HNRNPUL2Q1KMD3 747 aaKnown RBP24.01■■□□□ 1.43
LINC00554-201ENST00000564841 CEP162Q5TB80 1403 aa23.99■■□□□ 1.43
LINC00554-201ENST00000564841 EEA1Q15075 1411 aa23.92■■□□□ 1.42
LINC00554-201ENST00000564841 CFTRP13569 1480 aa23.9■■□□□ 1.42
LINC00554-201ENST00000564841 CADPSQ9ULU8 1353 aa23.88■■□□□ 1.41
LINC00554-201ENST00000564841 TNIKQ9UKE5 1360 aa23.87■■□□□ 1.41
LINC00554-201ENST00000564841 GOLGA3Q08378 1498 aa23.87■■□□□ 1.41
LINC00554-201ENST00000564841 CUX1P39880 1505 aa23.84■■□□□ 1.41
LINC00554-201ENST00000564841 BCANQ96GW7 911 aa23.83■■□□□ 1.41
LINC00554-201ENST00000564841 TOP2BQ02880 1626 aa23.82■■□□□ 1.4
LINC00554-201ENST00000564841 RAPGEF2Q9Y4G8 1499 aa23.81■■□□□ 1.4
LINC00554-201ENST00000564841 NESP48681 1621 aa23.81■■□□□ 1.4
LINC00554-201ENST00000564841 CEP164Q9UPV0 1460 aa23.78■■□□□ 1.4
LINC00554-201ENST00000564841 CLIP1P30622 1438 aa23.69■■□□□ 1.38
LINC00554-201ENST00000564841 KCNH8Q96L42 1107 aa23.67■■□□□ 1.38
LINC00554-201ENST00000564841 BIVM-ERCC5R4GMW8 1640 aa23.66■■□□□ 1.38
LINC00554-201ENST00000564841 FANCD2Q9BXW9 1451 aa23.66■■□□□ 1.38
LINC00554-201ENST00000564841 KIF27Q86VH2 1401 aa23.65■■□□□ 1.38
LINC00554-201ENST00000564841 CUX2O14529 1486 aa23.64■■□□□ 1.38
LINC00554-201ENST00000564841 APLP2Q06481 763 aa23.62■■□□□ 1.37
LINC00554-201ENST00000564841 FGD5Q6ZNL6 1462 aa23.58■■□□□ 1.37
LINC00554-201ENST00000564841 KIF21BO75037 1637 aa23.58■■□□□ 1.37
LINC00554-201ENST00000564841 CLSPNQ9HAW4 1339 aa23.56■■□□□ 1.36
LINC00554-201ENST00000564841 RAD54L2Q9Y4B4 1467 aa23.53■■□□□ 1.36
LINC00554-201ENST00000564841 FKBP8Q14318 412 aa23.51■■□□□ 1.35
LINC00554-201ENST00000564841 P3H3Q8IVL6 736 aa23.5■■□□□ 1.35
LINC00554-201ENST00000564841 PRXQ9BXM0 1461 aa23.48■■□□□ 1.35
LINC00554-201ENST00000564841 RBM19Q9Y4C8 960 aaKnown RBP23.47■■□□□ 1.35
LINC00554-201ENST00000564841 IGF1RP08069 1367 aa23.47■■□□□ 1.35
LINC00554-201ENST00000564841 ITGAEP38570 1179 aa23.46■■□□□ 1.35
LINC00554-201ENST00000564841 ATP1B4Q9UN42 357 aaPredicted RBP23.45■■□□□ 1.34
LINC00554-201ENST00000564841 PRDM2Q13029 1718 aa23.43■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms