RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 NISCHQ9Y2I1 1504 aa29.76■■■□□ 2.35
CUX1-213ENST00000549414 DCAF8L2P0C7V8 631 aa29.1■■■□□ 2.25
CUX1-213ENST00000549414 SUPT5HO00267 1087 aaKnown RBP27.97■■■□□ 2.07
CUX1-213ENST00000549414 SHROOM4Q9ULL8 1493 aa27.93■■■□□ 2.06
CUX1-213ENST00000549414 EHMT2Q96KQ7 1210 aa26.75■■□□□ 1.87
CUX1-213ENST00000549414 FAM9AQ8IZU1 332 aaPredicted RBP26.27■■□□□ 1.8
CUX1-213ENST00000549414 PCGF6Q9BYE7 350 aa25.99■■□□□ 1.75
CUX1-213ENST00000549414 TRIM41Q8WV44 630 aa25.79■■□□□ 1.72
CUX1-213ENST00000549414 TTBK1Q5TCY1 1321 aaPredicted RBP25.78■■□□□ 1.72
CUX1-213ENST00000549414 CHIC1Q5VXU3 224 aa25.5■■□□□ 1.67
CUX1-213ENST00000549414 RANGAP1P46060 587 aaPredicted RBP25.47■■□□□ 1.67
CUX1-213ENST00000549414 APLP2Q06481 763 aa25.41■■□□□ 1.66
CUX1-213ENST00000549414 LOC105371045A0A1W2PR82 267 aa25.39■■□□□ 1.65
CUX1-213ENST00000549414 PPARGC1BQ86YN6 1023 aaKnown RBP25.3■■□□□ 1.64
CUX1-213ENST00000549414 UBTFP17480 764 aaKnown RBP25.21■■□□□ 1.63
CUX1-213ENST00000549414 ABCC9O60706 1549 aa25.16■■□□□ 1.62
CUX1-213ENST00000549414 CCER1Q8TC90 406 aaPredicted RBP25.04■■□□□ 1.6
CUX1-213ENST00000549414 TRIM26Q12899 539 aaPredicted RBP24.9■■□□□ 1.58
CUX1-213ENST00000549414 ATP1B4Q9UN42 357 aaPredicted RBP24.87■■□□□ 1.57
CUX1-213ENST00000549414 ZEB1P37275 1124 aaPredicted RBP24.84■■□□□ 1.57
CUX1-213ENST00000549414 PABPN1Q86U42 306 aaKnown RBP eCLIP24.84■■□□□ 1.57
CUX1-213ENST00000549414 HRCP23327 699 aa24.83■■□□□ 1.57
CUX1-213ENST00000549414 ZCCHC6Q5VYS8 1495 aaKnown RBP24.77■■□□□ 1.56
CUX1-213ENST00000549414 HNRNPUL2Q1KMD3 747 aaKnown RBP24.42■■□□□ 1.5
CUX1-213ENST00000549414 SCRIBQ14160 1630 aa24.4■■□□□ 1.5
CUX1-213ENST00000549414 ITGAEP38570 1179 aa24.39■■□□□ 1.5
CUX1-213ENST00000549414 CCDC180Q9P1Z9 1646 aa24.39■■□□□ 1.5
CUX1-213ENST00000549414 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.37■■□□□ 1.49
CUX1-213ENST00000549414 YTHDC1Q96MU7 727 aaKnown RBP24.35■■□□□ 1.49
CUX1-213ENST00000549414 CENPBP07199 599 aaPredicted RBP24.34■■□□□ 1.49
CUX1-213ENST00000549414 PELP1Q8IZL8 1130 aaKnown RBP24.18■■□□□ 1.46
CUX1-213ENST00000549414 MYO15BQ96JP2 1530 aa24.02■■□□□ 1.44
CUX1-213ENST00000549414 CSRNP3Q8WYN3 585 aa23.96■■□□□ 1.43
CUX1-213ENST00000549414 RSF1Q96T23 1441 aaPredicted RBP23.87■■□□□ 1.41
CUX1-213ENST00000549414 MYT1LQ9UL68 1186 aa23.87■■□□□ 1.41
CUX1-213ENST00000549414 DIEXFQ68CQ4 756 aaKnown RBP23.8■■□□□ 1.4
CUX1-213ENST00000549414 FAM50AQ14320 339 aaKnown RBP23.78■■□□□ 1.4
CUX1-213ENST00000549414 DCAF1Q9Y4B6 1507 aa23.7■■□□□ 1.38
CUX1-213ENST00000549414 P3H3Q8IVL6 736 aa23.69■■□□□ 1.38
CUX1-213ENST00000549414 CNGB1Q14028 1251 aaPredicted RBP23.61■■□□□ 1.37
CUX1-213ENST00000549414 FBLN2P98095 1184 aa23.61■■□□□ 1.37
CUX1-213ENST00000549414 POLR3GLQ9BT43 218 aa23.61■■□□□ 1.37
CUX1-213ENST00000549414 NEFLP07196 543 aa23.58■■□□□ 1.37
CUX1-213ENST00000549414 NEUROD1Q13562 356 aa23.57■■□□□ 1.36
CUX1-213ENST00000549414 CECR2Q9BXF3 1484 aa23.57■■□□□ 1.36
CUX1-213ENST00000549414 RB1CC1Q8TDY2 1594 aa23.53■■□□□ 1.36
CUX1-213ENST00000549414 NACADO15069 1562 aa23.48■■□□□ 1.35
CUX1-213ENST00000549414 ARID3CA6NKF2 412 aa23.48■■□□□ 1.35
CUX1-213ENST00000549414 TRIM52Q96A61 297 aa23.41■■□□□ 1.34
CUX1-213ENST00000549414 ZNF316A6NFI3 1004 aaPredicted RBP23.37■■□□□ 1.33
CUX1-213ENST00000549414 ERICH6Q7L0X2 663 aa23.28■■□□□ 1.32
CUX1-213ENST00000549414 GTF3C3Q9Y5Q9 886 aa23.26■■□□□ 1.31
CUX1-213ENST00000549414 MROH2BQ7Z745 1585 aa23.23■■□□□ 1.31
CUX1-213ENST00000549414 CEP162Q5TB80 1403 aa23.19■■□□□ 1.3
CUX1-213ENST00000549414 CLIP1P30622 1438 aa23.18■■□□□ 1.3
CUX1-213ENST00000549414 WRNQ14191 1432 aaPredicted RBP eCLIP23.18■■□□□ 1.36e-6■■■□□ 16.7
CUX1-213ENST00000549414 BAZ1AQ9NRL2 1556 aaPredicted RBP23.17■■□□□ 1.3
CUX1-213ENST00000549414 ZNF326Q5BKZ1 582 aaKnown RBP23.15■■□□□ 1.3
CUX1-213ENST00000549414 BAZ1BQ9UIG0 1483 aaKnown RBP23.11■■□□□ 1.29
CUX1-213ENST00000549414 SOGA1O94964 1423 aa23.06■■□□□ 1.28
CUX1-213ENST00000549414 ACIN1Q9UKV3 1341 aaKnown RBP23.05■■□□□ 1.28
CUX1-213ENST00000549414 BCANQ96GW7 911 aa23.04■■□□□ 1.28
CUX1-213ENST00000549414 GOLGA3Q08378 1498 aa23.04■■□□□ 1.28
CUX1-213ENST00000549414 ZNF777Q9ULD5 760 aaPredicted RBP23.03■■□□□ 1.28
CUX1-213ENST00000549414 SLC4A1APQ9BWU0 796 aaKnown RBP23.02■■□□□ 1.27
CUX1-213ENST00000549414 EEA1Q15075 1411 aa23■■□□□ 1.27
CUX1-213ENST00000549414 TNIKQ9UKE5 1360 aa22.97■■□□□ 1.27
CUX1-213ENST00000549414 ANP32CO43423 234 aa22.97■■□□□ 1.27
CUX1-213ENST00000549414 ABCC8Q09428 1581 aa22.97■■□□□ 1.27
CUX1-213ENST00000549414 CCDC88BA6NC98 1476 aa22.95■■□□□ 1.27
CUX1-213ENST00000549414 CHIC2Q9UKJ5 165 aa22.94■■□□□ 1.26
CUX1-213ENST00000549414 WIZO95785 1651 aa22.92■■□□□ 1.26
CUX1-213ENST00000549414 DDX10Q13206 875 aaKnown RBP22.84■■□□□ 1.25
CUX1-213ENST00000549414 CEP164Q9UPV0 1460 aa22.84■■□□□ 1.25
CUX1-213ENST00000549414 HIRIP3Q9BW71 556 aaPredicted RBP22.81■■□□□ 1.24
CUX1-213ENST00000549414 MIER1Q8N108 512 aa22.8■■□□□ 1.24
CUX1-213ENST00000549414 CDK11AQ9UQ88 783 aaPredicted RBP22.8■■□□□ 1.24
CUX1-213ENST00000549414 KIF27Q86VH2 1401 aa22.8■■□□□ 1.24
CUX1-213ENST00000549414 TONSLQ96HA7 1378 aa22.79■■□□□ 1.24
CUX1-213ENST00000549414 MTUS2Q5JR59 1369 aa22.78■■□□□ 1.24
CUX1-213ENST00000549414 SCAF1Q9H7N4 1312 aaKnown RBP22.68■■□□□ 1.22
CUX1-213ENST00000549414 RRP7BPQ9NSQ0 103 aa22.67■■□□□ 1.22
CUX1-213ENST00000549414 CHMP7Q8WUX9 453 aaPredicted RBP22.63■■□□□ 1.21
CUX1-213ENST00000549414 TOP2AP11388 1531 aaKnown RBP22.62■■□□□ 1.21
CUX1-213ENST00000549414 PLPPR3Q6T4P5 718 aa22.61■■□□□ 1.21
CUX1-213ENST00000549414 CUX2O14529 1486 aa22.59■■□□□ 1.21
CUX1-213ENST00000549414 KANK4Q5T7N3 995 aaPredicted RBP22.56■■□□□ 1.2
CUX1-213ENST00000549414 RUSC2Q8N2Y8 1516 aa22.55■■□□□ 1.2
CUX1-213ENST00000549414 CARMIL1Q5VZK9 1371 aa22.53■■□□□ 1.2
CUX1-213ENST00000549414 SIN3AQ96ST3 1273 aa22.52■■□□□ 1.2
CUX1-213ENST00000549414 HNRNPUQ00839 825 aaKnown RBP eCLIP22.51■■□□□ 1.19
CUX1-213ENST00000549414 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.51■■□□□ 1.191e-6■■□□□ 14.2
CUX1-213ENST00000549414 FKBP8Q14318 412 aa22.5■■□□□ 1.19
CUX1-213ENST00000549414 NPM1P06748 294 aaKnown RBP eCLIP22.49■■□□□ 1.19
CUX1-213ENST00000549414 VPS8Q8N3P4 1428 aa22.49■■□□□ 1.19
CUX1-213ENST00000549414 SMARCA4P51532 1647 aa22.48■■□□□ 1.19
CUX1-213ENST00000549414 FAM9BQ8IZU0 186 aa22.48■■□□□ 1.19
CUX1-213ENST00000549414 SMARCA2P51531 1590 aa22.48■■□□□ 1.19
CUX1-213ENST00000549414 ATAD2BQ9ULI0 1458 aa22.45■■□□□ 1.18
CUX1-213ENST00000549414 DAXXQ9UER7 740 aaPredicted RBP22.45■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms