Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC18.22■□□□□ 0.512e-21■□□□□ 10
DDX55Q8NHQ9 FDPS-206ENST00000467076 1178 ntAPPRIS ALT1 TSL 3 BASIC15.37■□□□□ 0.052e-21■□□□□ 10
DDX55Q8NHQ9 FDPS-220ENST00000611010 1196 ntTSL 5 BASIC15□□□□□ -0.012e-21■□□□□ 10
DDX55Q8NHQ9 FDPS-215ENST00000490140 680 ntTSL 214.77□□□□□ -0.052e-21■□□□□ 10
DDX55Q8NHQ9 FDPS-217ENST00000492244 673 ntTSL 314.77□□□□□ -0.052e-21■□□□□ 10
DDX55Q8NHQ9 FDPS-214ENST00000489324 475 ntTSL 211.65□□□□□ -0.542e-21■□□□□ 10
DDX55Q8NHQ9 RPS28-201ENST00000417088 334 ntTSL 218.57■□□□□ 0.562e-6■□□□□ 9.9
DDX55Q8NHQ9 AKT2-203ENST00000391844 1795 ntTSL 1 (best)28.92■■■□□ 2.226e-14■□□□□ 9.9
DDX55Q8NHQ9 RING1-202ENST00000478431 1532 ntTSL 1 (best)28.91■■■□□ 2.221e-9■□□□□ 9.9
DDX55Q8NHQ9 NUBP2-205ENST00000564227 903 ntTSL 327.87■■■□□ 2.051e-9■□□□□ 9.9
DDX55Q8NHQ9 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.821e-9■□□□□ 9.9
DDX55Q8NHQ9 NUBP2-209ENST00000566090 708 ntTSL 225.72■■□□□ 1.711e-9■□□□□ 9.9
DDX55Q8NHQ9 NUBP2-212ENST00000568287 839 ntTSL 524.37■■□□□ 1.491e-9■□□□□ 9.9
DDX55Q8NHQ9 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC24.24■■□□□ 1.471e-9■□□□□ 9.9
DDX55Q8NHQ9 NUBP2-210ENST00000566447 511 ntTSL 422.6■■□□□ 1.211e-9■□□□□ 9.9
DDX55Q8NHQ9 NUBP2-202ENST00000562263 811 ntTSL 322.29■■□□□ 1.161e-9■□□□□ 9.9
DDX55Q8NHQ9 NUBP2-216ENST00000569898 582 ntTSL 321.88■■□□□ 1.091e-9■□□□□ 9.9
DDX55Q8NHQ9 COL18A1-207ENST00000473212 2515 ntTSL 221.88■■□□□ 1.091e-9■□□□□ 9.9
DDX55Q8NHQ9 SRRM2-221ENST00000574866 638 ntTSL 321.81■■□□□ 1.081e-9■□□□□ 9.9
DDX55Q8NHQ9 NUBP2-204ENST00000563821 2235 nt21.08■□□□□ 0.971e-9■□□□□ 9.9
DDX55Q8NHQ9 NUBP2-203ENST00000563136 470 ntTSL 418.61■□□□□ 0.571e-9■□□□□ 9.9
DDX55Q8NHQ9 ADD2-210ENST00000456320 997 ntTSL 518.35■□□□□ 0.533e-18■□□□□ 9.9
DDX55Q8NHQ9 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.51e-7■□□□□ 9.9
DDX55Q8NHQ9 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.451e-7■□□□□ 9.9
DDX55Q8NHQ9 ADD2-202ENST00000355733 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.043e-18■□□□□ 9.9
DDX55Q8NHQ9 AKT2-222ENST00000489375 734 ntTSL 513.85□□□□□ -0.196e-14■□□□□ 9.9
DDX55Q8NHQ9 DDX24-207ENST00000555762 5573 ntTSL 1 (best)11.66□□□□□ -0.541e-9■□□□□ 9.9
DDX55Q8NHQ9 ADD2-201ENST00000264436 9267 ntAPPRIS P4 TSL 1 (best) BASIC11.35□□□□□ -0.593e-18■□□□□ 9.9
DDX55Q8NHQ9 CTNND1-210ENST00000524630 6553 ntAPPRIS P1 TSL 2 BASIC11.24□□□□□ -0.616e-14■□□□□ 9.9
DDX55Q8NHQ9 ZFAS1-210ENST00000623640 732 ntTSL 2 BASIC11.22□□□□□ -0.611e-22■□□□□ 9.9
DDX55Q8NHQ9 ADD2-214ENST00000522886 874 ntTSL 510.94□□□□□ -0.663e-18■□□□□ 9.9
DDX55Q8NHQ9 ADD2-205ENST00000413157 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.663e-18■□□□□ 9.9
DDX55Q8NHQ9 CTNND1-213ENST00000526357 5994 ntTSL 1 (best) BASIC10.61□□□□□ -0.716e-14■□□□□ 9.9
DDX55Q8NHQ9 DDX24-202ENST00000544005 2214 ntTSL 2 BASIC10.48□□□□□ -0.731e-9■□□□□ 9.9
DDX55Q8NHQ9 SUPT6H-202ENST00000347486 5569 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.764e-6■□□□□ 9.9
DDX55Q8NHQ9 ADD2-203ENST00000403045 3745 ntTSL 210.29□□□□□ -0.763e-18■□□□□ 9.9
DDX55Q8NHQ9 DDX24-210ENST00000622786 1730 ntTSL 5 BASIC10.05□□□□□ -0.81e-9■□□□□ 9.9
DDX55Q8NHQ9 CTNND1-201ENST00000358694 6135 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.836e-14■□□□□ 9.9
DDX55Q8NHQ9 CTNND1-208ENST00000428599 6016 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.836e-14■□□□□ 9.9
DDX55Q8NHQ9 CTNND1-237ENST00000534579 6024 ntTSL 5 BASIC9.63□□□□□ -0.876e-14■□□□□ 9.9
DDX55Q8NHQ9 CTNND1-205ENST00000399050 6313 ntTSL 1 (best) BASIC9.59□□□□□ -0.876e-14■□□□□ 9.9
DDX55Q8NHQ9 CTNND1-232ENST00000532649 6026 ntTSL 1 (best) BASIC9.54□□□□□ -0.886e-14■□□□□ 9.9
DDX55Q8NHQ9 DDX24-203ENST00000553400 618 ntTSL 39.42□□□□□ -0.91e-9■□□□□ 9.9
DDX55Q8NHQ9 CTNND1-221ENST00000529873 5931 ntTSL 1 (best) BASIC9.4□□□□□ -0.96e-14■□□□□ 9.9
DDX55Q8NHQ9 CTNND1-231ENST00000532463 5749 ntTSL 1 (best) BASIC9.4□□□□□ -0.96e-14■□□□□ 9.9
DDX55Q8NHQ9 CTNND1-219ENST00000528621 5907 ntTSL 1 (best) BASIC9.33□□□□□ -0.926e-14■□□□□ 9.9
DDX55Q8NHQ9 ADD2-204ENST00000407644 3741 ntAPPRIS P4 TSL 1 (best) BASIC9.32□□□□□ -0.923e-18■□□□□ 9.9
DDX55Q8NHQ9 CTNND1-202ENST00000361332 6295 ntTSL 1 (best) BASIC9.29□□□□□ -0.926e-14■□□□□ 9.9
DDX55Q8NHQ9 CTNND1-227ENST00000530748 5925 ntTSL 1 (best) BASIC9.29□□□□□ -0.926e-14■□□□□ 9.9
DDX55Q8NHQ9 CTNND1-206ENST00000415361 5832 ntTSL 1 (best) BASIC9.27□□□□□ -0.936e-14■□□□□ 9.9
DDX55Q8NHQ9 CTNND1-225ENST00000530094 5814 ntTSL 1 (best) BASIC9.27□□□□□ -0.936e-14■□□□□ 9.9
DDX55Q8NHQ9 CTNND1-234ENST00000532844 6012 ntTSL 1 (best) BASIC9.13□□□□□ -0.956e-14■□□□□ 9.9
DDX55Q8NHQ9 DDX24-209ENST00000621632 5612 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.961e-9■□□□□ 9.9
DDX55Q8NHQ9 DDX24-201ENST00000330836 2738 ntTSL 1 (best) BASIC9.03□□□□□ -0.961e-9■□□□□ 9.9
DDX55Q8NHQ9 CTNND1-220ENST00000529526 6099 ntTSL 1 (best) BASIC8.84□□□□□ -0.996e-14■□□□□ 9.9
DDX55Q8NHQ9 CTNND1-203ENST00000361391 6232 ntTSL 1 (best) BASIC8.81□□□□□ -16e-14■□□□□ 9.9
DDX55Q8NHQ9 CTNND1-204ENST00000361796 6226 ntTSL 1 (best) BASIC8.81□□□□□ -16e-14■□□□□ 9.9
DDX55Q8NHQ9 DDX24-205ENST00000555054 2769 ntTSL 5 BASIC8.74□□□□□ -1.011e-9■□□□□ 9.9
DDX55Q8NHQ9 DDX24-211ENST00000640432 2580 ntTSL 5 BASIC8.61□□□□□ -1.031e-9■□□□□ 9.9
DDX55Q8NHQ9 CTNND1-233ENST00000532787 5751 ntTSL 1 (best) BASIC8.56□□□□□ -1.046e-14■□□□□ 9.9
DDX55Q8NHQ9 CTNND1-223ENST00000529986 5727 ntTSL 1 (best) BASIC8.5□□□□□ -1.056e-14■□□□□ 9.9
DDX55Q8NHQ9 CTNND1-207ENST00000426142 5800 ntTSL 1 (best) BASIC8.48□□□□□ -1.056e-14■□□□□ 9.9
DDX55Q8NHQ9 CTNND1-230ENST00000532245 5655 ntTSL 1 (best) BASIC8.46□□□□□ -1.056e-14■□□□□ 9.9
DDX55Q8NHQ9 CTNND1-216ENST00000527467 5071 ntTSL 1 (best) BASIC8.33□□□□□ -1.086e-14■□□□□ 9.9
DDX55Q8NHQ9 CTNND1-229ENST00000531014 5053 ntTSL 1 (best) BASIC8.33□□□□□ -1.086e-14■□□□□ 9.9
DDX55Q8NHQ9 CTNND1-218ENST00000528232 5745 ntTSL 1 (best) BASIC8.12□□□□□ -1.116e-14■□□□□ 9.9
DDX55Q8NHQ9 CTNND1-236ENST00000533667 4990 ntTSL 1 (best) BASIC7.77□□□□□ -1.176e-14■□□□□ 9.9
DDX55Q8NHQ9 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC7.59□□□□□ -1.26e-14■□□□□ 9.9
DDX55Q8NHQ9 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC7.59□□□□□ -1.26e-14■□□□□ 9.9
DDX55Q8NHQ9 DDX24-204ENST00000553451 486 ntTSL 35.56□□□□□ -1.521e-9■□□□□ 9.9
DDX55Q8NHQ9 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.585e-11■□□□□ 9.9
DDX55Q8NHQ9 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.235e-11■□□□□ 9.9
DDX55Q8NHQ9 RNASE4-202ENST00000555597 1341 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.365e-11■□□□□ 9.9
DDX55Q8NHQ9 CD46-202ENST00000322918 3124 ntAPPRIS ALT2 TSL 1 (best) BASIC10.13□□□□□ -0.792e-8■□□□□ 9.9
DDX55Q8NHQ9 CD46-206ENST00000360212 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC9.06□□□□□ -0.962e-8■□□□□ 9.9
DDX55Q8NHQ9 CD46-209ENST00000367047 3089 ntTSL 5 BASIC9.01□□□□□ -0.972e-8■□□□□ 9.9
DDX55Q8NHQ9 CD46-205ENST00000358170 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC8.63□□□□□ -1.032e-8■□□□□ 9.9
DDX55Q8NHQ9 CD46-208ENST00000367042 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC8.5□□□□□ -1.052e-8■□□□□ 9.9
DDX55Q8NHQ9 CD46-203ENST00000354848 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC8.34□□□□□ -1.072e-8■□□□□ 9.9
DDX55Q8NHQ9 CD46-201ENST00000322875 3278 ntAPPRIS P4 TSL 1 (best) BASIC8.23□□□□□ -1.092e-8■□□□□ 9.9
DDX55Q8NHQ9 CD46-207ENST00000367041 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC8.23□□□□□ -1.092e-8■□□□□ 9.9
DDX55Q8NHQ9 CD46-204ENST00000357714 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC8.06□□□□□ -1.122e-8■□□□□ 9.9
DDX55Q8NHQ9 CD46-212ENST00000469535 7826 ntTSL 1 (best)7.56□□□□□ -1.22e-8■□□□□ 9.9
DDX55Q8NHQ9 ATG9A-215ENST00000446716 5245 ntTSL 218.96■□□□□ 0.633e-10■□□□□ 9.9
DDX55Q8NHQ9 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.263e-10■□□□□ 9.9
DDX55Q8NHQ9 ATG9A-203ENST00000409033 3701 ntTSL 1 (best)13.42□□□□□ -0.263e-10■□□□□ 9.9
DDX55Q8NHQ9 ATG9A-202ENST00000396761 3799 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.583e-10■□□□□ 9.9
DDX55Q8NHQ9 SOD1-203ENST00000470944 1746 ntTSL 234.04■■■■□ 3.041e-6■□□□□ 9.9
DDX55Q8NHQ9 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC32.37■■■□□ 2.771e-6■□□□□ 9.9
DDX55Q8NHQ9 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC29.01■■■□□ 2.241e-6■□□□□ 9.9
DDX55Q8NHQ9 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC27.04■■□□□ 1.921e-6■□□□□ 9.9
DDX55Q8NHQ9 SAE1-211ENST00000600753 483 ntTSL 426.56■■□□□ 1.841e-6■□□□□ 9.9
DDX55Q8NHQ9 RPL22-204ENST00000465387 508 ntTSL 226.49■■□□□ 1.831e-6■□□□□ 9.9
DDX55Q8NHQ9 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.731e-6■□□□□ 9.9
DDX55Q8NHQ9 TSEN34-207ENST00000496583 2372 ntTSL 224.21■■□□□ 1.471e-6■□□□□ 9.9
DDX55Q8NHQ9 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.281e-6■□□□□ 9.9
DDX55Q8NHQ9 RPL22-206ENST00000480661 2279 ntTSL 1 (best)22.66■■□□□ 1.221e-6■□□□□ 9.9
DDX55Q8NHQ9 SAE1-208ENST00000597808 570 ntTSL 221.69■■□□□ 1.061e-6■□□□□ 9.9
DDX55Q8NHQ9 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC21.63■■□□□ 1.051e-6■□□□□ 9.9
DDX55Q8NHQ9 SAE1-204ENST00000414294 2211 ntTSL 221.35■■□□□ 1.011e-6■□□□□ 9.9
Retrieved 100 of 15,504 protein–RNA pairs in 113.1 ms