RNA–Protein interactions for RNA: ENST00000428599.6

CTNND1-208, Transcript of catenin delta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTNND1, Length 6,016 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNND1-208ENST00000428599 DCAF8L2P0C7V8 631 aa15.59■□□□□ 0.09
CTNND1-208ENST00000428599 NISCHQ9Y2I1 1504 aa15.3■□□□□ 0.04
CTNND1-208ENST00000428599 SUPT5HO00267 1087 aaKnown RBP14.59□□□□□ -0.07
CTNND1-208ENST00000428599 SHROOM4Q9ULL8 1493 aa14.52□□□□□ -0.08
CTNND1-208ENST00000428599 PELP1Q8IZL8 1130 aaKnown RBP14.32□□□□□ -0.12
CTNND1-208ENST00000428599 FAM9AQ8IZU1 332 aaPredicted RBP14.18□□□□□ -0.14
CTNND1-208ENST00000428599 APLP2Q06481 763 aa14.11□□□□□ -0.15
CTNND1-208ENST00000428599 EHMT2Q96KQ7 1210 aa14.07□□□□□ -0.16
CTNND1-208ENST00000428599 ERICH6Q7L0X2 663 aa13.71□□□□□ -0.21
CTNND1-208ENST00000428599 CCER1Q8TC90 406 aaPredicted RBP13.69□□□□□ -0.22
CTNND1-208ENST00000428599 TTBK1Q5TCY1 1321 aaPredicted RBP13.6□□□□□ -0.23
CTNND1-208ENST00000428599 ATP1B4Q9UN42 357 aaPredicted RBP13.58□□□□□ -0.24
CTNND1-208ENST00000428599 RANGAP1P46060 587 aaPredicted RBP13.55□□□□□ -0.24
CTNND1-208ENST00000428599 TRIM41Q8WV44 630 aa13.54□□□□□ -0.24
CTNND1-208ENST00000428599 CENPBP07199 599 aaPredicted RBP13.44□□□□□ -0.26
CTNND1-208ENST00000428599 PCGF6Q9BYE7 350 aa13.43□□□□□ -0.26
CTNND1-208ENST00000428599 UBTFP17480 764 aaKnown RBP13.37□□□□□ -0.27
CTNND1-208ENST00000428599 NEFLP07196 543 aa13.36□□□□□ -0.27
CTNND1-208ENST00000428599 ABCC9O60706 1549 aa13.34□□□□□ -0.27
CTNND1-208ENST00000428599 MYT1LQ9UL68 1186 aa13.3□□□□□ -0.28
CTNND1-208ENST00000428599 ZEB1P37275 1124 aaPredicted RBP13.3□□□□□ -0.28
CTNND1-208ENST00000428599 PABPN1Q86U42 306 aaKnown RBP eCLIP13.18□□□□□ -0.34e-7■□□□□ 8.4
CTNND1-208ENST00000428599 DAXXQ9UER7 740 aaPredicted RBP13.17□□□□□ -0.3
CTNND1-208ENST00000428599 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.12□□□□□ -0.31
CTNND1-208ENST00000428599 HNRNPUL2Q1KMD3 747 aaKnown RBP13.12□□□□□ -0.31
CTNND1-208ENST00000428599 YTHDC1Q96MU7 727 aaKnown RBP13.07□□□□□ -0.32
CTNND1-208ENST00000428599 POLR3GLQ9BT43 218 aa13.06□□□□□ -0.32
CTNND1-208ENST00000428599 PPARGC1BQ86YN6 1023 aaKnown RBP13.05□□□□□ -0.32
CTNND1-208ENST00000428599 MYT1Q01538 1121 aa13□□□□□ -0.33
CTNND1-208ENST00000428599 CHIC1Q5VXU3 224 aa13□□□□□ -0.33
CTNND1-208ENST00000428599 SLC4A1APQ9BWU0 796 aaKnown RBP12.98□□□□□ -0.33
CTNND1-208ENST00000428599 ITGAEP38570 1179 aa12.9□□□□□ -0.34
CTNND1-208ENST00000428599 LOC105371045A0A1W2PR82 267 aa12.89□□□□□ -0.35
CTNND1-208ENST00000428599 CNGB1Q14028 1251 aaPredicted RBP12.83□□□□□ -0.36
CTNND1-208ENST00000428599 CLSPNQ9HAW4 1339 aa12.82□□□□□ -0.36
CTNND1-208ENST00000428599 ZNF316A6NFI3 1004 aaPredicted RBP12.81□□□□□ -0.36
CTNND1-208ENST00000428599 TRIM26Q12899 539 aaPredicted RBP12.8□□□□□ -0.36
CTNND1-208ENST00000428599 SCRIBQ14160 1630 aa12.73□□□□□ -0.37
CTNND1-208ENST00000428599 FBLN2P98095 1184 aa12.71□□□□□ -0.38
CTNND1-208ENST00000428599 ZBTB47Q9UFB7 747 aaPredicted RBP12.7□□□□□ -0.38
CTNND1-208ENST00000428599 RTL5Q5HYW3 569 aaPredicted RBP12.69□□□□□ -0.38
CTNND1-208ENST00000428599 CCDC180Q9P1Z9 1646 aa12.68□□□□□ -0.38
CTNND1-208ENST00000428599 ZCCHC6Q5VYS8 1495 aaKnown RBP12.65□□□□□ -0.38
CTNND1-208ENST00000428599 FAM50AQ14320 339 aaKnown RBP12.62□□□□□ -0.39
CTNND1-208ENST00000428599 SLC24A1O60721 1099 aa12.61□□□□□ -0.39
CTNND1-208ENST00000428599 TRIM52Q96A61 297 aa12.6□□□□□ -0.39
CTNND1-208ENST00000428599 BCANQ96GW7 911 aa12.57□□□□□ -0.4
CTNND1-208ENST00000428599 NEFMP07197 916 aa12.54□□□□□ -0.4
CTNND1-208ENST00000428599 HRCP23327 699 aa12.5□□□□□ -0.41
CTNND1-208ENST00000428599 P3H3Q8IVL6 736 aa12.49□□□□□ -0.41
CTNND1-208ENST00000428599 RB1CC1Q8TDY2 1594 aa12.49□□□□□ -0.41
CTNND1-208ENST00000428599 CANXP27824 592 aaKnown RBP12.48□□□□□ -0.41
CTNND1-208ENST00000428599 ARID3CA6NKF2 412 aa12.47□□□□□ -0.41
CTNND1-208ENST00000428599 ZNF326Q5BKZ1 582 aaKnown RBP12.47□□□□□ -0.41
CTNND1-208ENST00000428599 CSRNP3Q8WYN3 585 aa12.46□□□□□ -0.42
CTNND1-208ENST00000428599 BCL11AQ9H165 835 aa12.43□□□□□ -0.42
CTNND1-208ENST00000428599 ESF1Q9H501 851 aaKnown RBP12.42□□□□□ -0.42
CTNND1-208ENST00000428599 NEUROD1Q13562 356 aa12.42□□□□□ -0.42
CTNND1-208ENST00000428599 ANP32CO43423 234 aa12.36□□□□□ -0.43
CTNND1-208ENST00000428599 ZNF777Q9ULD5 760 aaPredicted RBP12.34□□□□□ -0.43
CTNND1-208ENST00000428599 NACADO15069 1562 aa12.33□□□□□ -0.44
CTNND1-208ENST00000428599 DIEXFQ68CQ4 756 aaKnown RBP12.32□□□□□ -0.44
CTNND1-208ENST00000428599 CDK11AQ9UQ88 783 aaPredicted RBP12.32□□□□□ -0.44
CTNND1-208ENST00000428599 STAG3Q9UJ98 1225 aa12.29□□□□□ -0.44
CTNND1-208ENST00000428599 NPM1P06748 294 aaKnown RBP eCLIP12.25□□□□□ -0.45
CTNND1-208ENST00000428599 PLPPR3Q6T4P5 718 aa12.23□□□□□ -0.45
CTNND1-208ENST00000428599 ANP32BQ92688 251 aaKnown RBP12.22□□□□□ -0.45
CTNND1-208ENST00000428599 CHMP7Q8WUX9 453 aaPredicted RBP12.21□□□□□ -0.46
CTNND1-208ENST00000428599 BAZ1BQ9UIG0 1483 aaKnown RBP12.19□□□□□ -0.46
CTNND1-208ENST00000428599 CHGAP10645 457 aaKnown RBP12.19□□□□□ -0.46
CTNND1-208ENST00000428599 HSP90AA1P07900 732 aaKnown RBP12.18□□□□□ -0.46
CTNND1-208ENST00000428599 RSF1Q96T23 1441 aaPredicted RBP12.17□□□□□ -0.46
CTNND1-208ENST00000428599 ANP32AP39687 249 aaKnown RBP12.17□□□□□ -0.46
CTNND1-208ENST00000428599 CDK11BP21127 795 aaKnown RBP12.14□□□□□ -0.47
CTNND1-208ENST00000428599 UPF2Q9HAU5 1272 aaKnown RBP12.12□□□□□ -0.47
CTNND1-208ENST00000428599 SCAF1Q9H7N4 1312 aaKnown RBP12.11□□□□□ -0.47
CTNND1-208ENST00000428599 NPM2Q86SE8 214 aaKnown RBP12.1□□□□□ -0.47
CTNND1-208ENST00000428599 A0A0G2JS52 829 aa12.09□□□□□ -0.47
CTNND1-208ENST00000428599 ERCC6Q03468 1493 aa12.07□□□□□ -0.48
CTNND1-208ENST00000428599 CHIC2Q9UKJ5 165 aa12.07□□□□□ -0.48
CTNND1-208ENST00000428599 BAZ1AQ9NRL2 1556 aaPredicted RBP12.06□□□□□ -0.48
CTNND1-208ENST00000428599 MTUS2Q5JR59 1369 aa12.05□□□□□ -0.48
CTNND1-208ENST00000428599 WRNQ14191 1432 aaPredicted RBP eCLIP12.05□□□□□ -0.48
CTNND1-208ENST00000428599 DCAF1Q9Y4B6 1507 aa12.05□□□□□ -0.48
CTNND1-208ENST00000428599 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.04□□□□□ -0.481e-8■■□□□ 13.5
CTNND1-208ENST00000428599 CLIP1P30622 1438 aa12.02□□□□□ -0.48
CTNND1-208ENST00000428599 TSPY4P0CV99 314 aa12.01□□□□□ -0.49
CTNND1-208ENST00000428599 TSPY10P0CW01 314 aa12.01□□□□□ -0.49
CTNND1-208ENST00000428599 CECR2Q9BXF3 1484 aa12.01□□□□□ -0.49
CTNND1-208ENST00000428599 TONSLQ96HA7 1378 aa12.01□□□□□ -0.49
CTNND1-208ENST00000428599 KCNH8Q96L42 1107 aa11.99□□□□□ -0.49
CTNND1-208ENST00000428599 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.99□□□□□ -0.49
CTNND1-208ENST00000428599 GTF3C3Q9Y5Q9 886 aa11.99□□□□□ -0.49
CTNND1-208ENST00000428599 EEA1Q15075 1411 aa11.98□□□□□ -0.49
CTNND1-208ENST00000428599 KIF27Q86VH2 1401 aa11.98□□□□□ -0.49
CTNND1-208ENST00000428599 GOLGA3Q08378 1498 aa11.97□□□□□ -0.49
CTNND1-208ENST00000428599 MYH16Q9H6N6 1097 aa11.96□□□□□ -0.49
CTNND1-208ENST00000428599 ZBTB7CA1YPR0 619 aa11.96□□□□□ -0.5
CTNND1-208ENST00000428599 PLEKHD1A6NEE1 506 aa11.95□□□□□ -0.5
CTNND1-208ENST00000428599 WDR43Q15061 677 aaKnown RBP eCLIP11.94□□□□□ -0.53e-9■■■□□ 15.6
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms