RNA–Protein interactions for RNA: ENST00000533667.5

CTNND1-236, Transcript of catenin delta 1, humanhuman

TSL 1 (best) BASIC

Gene CTNND1, Length 4,990 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNND1-236ENST00000533667 DCAF8L2P0C7V8 631 aa11.82□□□□□ -0.52
CTNND1-236ENST00000533667 MYT1Q01538 1121 aa11.67□□□□□ -0.54
CTNND1-236ENST00000533667 PELP1Q8IZL8 1130 aaKnown RBP11.51□□□□□ -0.57
CTNND1-236ENST00000533667 NISCHQ9Y2I1 1504 aa11.49□□□□□ -0.57
CTNND1-236ENST00000533667 SUPT5HO00267 1087 aaKnown RBP11.35□□□□□ -0.59
CTNND1-236ENST00000533667 SHROOM4Q9ULL8 1493 aa11.07□□□□□ -0.64
CTNND1-236ENST00000533667 APLP2Q06481 763 aa10.95□□□□□ -0.66
CTNND1-236ENST00000533667 TTBK1Q5TCY1 1321 aaPredicted RBP10.85□□□□□ -0.67
CTNND1-236ENST00000533667 EHMT2Q96KQ7 1210 aa10.83□□□□□ -0.68
CTNND1-236ENST00000533667 ZEB1P37275 1124 aaPredicted RBP10.78□□□□□ -0.68
CTNND1-236ENST00000533667 FAM9AQ8IZU1 332 aaPredicted RBP10.78□□□□□ -0.68
CTNND1-236ENST00000533667 CENPBP07199 599 aaPredicted RBP10.71□□□□□ -0.69
CTNND1-236ENST00000533667 PCGF6Q9BYE7 350 aa10.7□□□□□ -0.7
CTNND1-236ENST00000533667 CCER1Q8TC90 406 aaPredicted RBP10.64□□□□□ -0.71
CTNND1-236ENST00000533667 ERICH6Q7L0X2 663 aa10.62□□□□□ -0.71
CTNND1-236ENST00000533667 TRIM41Q8WV44 630 aa10.6□□□□□ -0.71
CTNND1-236ENST00000533667 UBTFP17480 764 aaKnown RBP10.45□□□□□ -0.74
CTNND1-236ENST00000533667 NEFLP07196 543 aa10.45□□□□□ -0.74
CTNND1-236ENST00000533667 RANGAP1P46060 587 aaPredicted RBP10.4□□□□□ -0.75
CTNND1-236ENST00000533667 ATP1B4Q9UN42 357 aaPredicted RBP10.38□□□□□ -0.75
CTNND1-236ENST00000533667 TRIM26Q12899 539 aaPredicted RBP10.37□□□□□ -0.75
CTNND1-236ENST00000533667 HRCP23327 699 aa10.27□□□□□ -0.77
CTNND1-236ENST00000533667 YTHDC1Q96MU7 727 aaKnown RBP10.26□□□□□ -0.77
CTNND1-236ENST00000533667 CHIC1Q5VXU3 224 aa10.15□□□□□ -0.78
CTNND1-236ENST00000533667 PPARGC1BQ86YN6 1023 aaKnown RBP10.13□□□□□ -0.79
CTNND1-236ENST00000533667 DAXXQ9UER7 740 aaPredicted RBP10.13□□□□□ -0.79
CTNND1-236ENST00000533667 LOC105371045A0A1W2PR82 267 aa10.05□□□□□ -0.8
CTNND1-236ENST00000533667 ITGAEP38570 1179 aa10.05□□□□□ -0.8
CTNND1-236ENST00000533667 HNRNPUL2Q1KMD3 747 aaKnown RBP10.03□□□□□ -0.8
CTNND1-236ENST00000533667 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.03□□□□□ -0.8
CTNND1-236ENST00000533667 POLR3GLQ9BT43 218 aa9.99□□□□□ -0.81
CTNND1-236ENST00000533667 DIEXFQ68CQ4 756 aaKnown RBP9.98□□□□□ -0.81
CTNND1-236ENST00000533667 MYT1LQ9UL68 1186 aa9.98□□□□□ -0.81
CTNND1-236ENST00000533667 RTL5Q5HYW3 569 aaPredicted RBP9.93□□□□□ -0.82
CTNND1-236ENST00000533667 GLIPR1L2Q4G1C9 344 aa9.88□□□□□ -0.83
CTNND1-236ENST00000533667 ZNF316A6NFI3 1004 aaPredicted RBP9.88□□□□□ -0.83
CTNND1-236ENST00000533667 FAM50AQ14320 339 aaKnown RBP9.86□□□□□ -0.83
CTNND1-236ENST00000533667 CLSPNQ9HAW4 1339 aa9.84□□□□□ -0.83
CTNND1-236ENST00000533667 SLC24A1O60721 1099 aa9.84□□□□□ -0.83
CTNND1-236ENST00000533667 ANP32CO43423 234 aa9.82□□□□□ -0.84
CTNND1-236ENST00000533667 TRIM52Q96A61 297 aa9.82□□□□□ -0.84
CTNND1-236ENST00000533667 CNGB1Q14028 1251 aaPredicted RBP9.8□□□□□ -0.84
CTNND1-236ENST00000533667 SLC4A1APQ9BWU0 796 aaKnown RBP9.8□□□□□ -0.84
CTNND1-236ENST00000533667 CDK11AQ9UQ88 783 aaPredicted RBP9.77□□□□□ -0.85
CTNND1-236ENST00000533667 NEUROD1Q13562 356 aa9.76□□□□□ -0.85
CTNND1-236ENST00000533667 GTF3C3Q9Y5Q9 886 aa9.76□□□□□ -0.85
CTNND1-236ENST00000533667 ABCC9O60706 1549 aa9.71□□□□□ -0.85
CTNND1-236ENST00000533667 ZBTB47Q9UFB7 747 aaPredicted RBP9.7□□□□□ -0.86
CTNND1-236ENST00000533667 CSRNP3Q8WYN3 585 aa9.69□□□□□ -0.86
CTNND1-236ENST00000533667 ACIN1Q9UKV3 1341 aaKnown RBP9.68□□□□□ -0.86
CTNND1-236ENST00000533667 PABPN1Q86U42 306 aaKnown RBP eCLIP9.67□□□□□ -0.864e-7■□□□□ 8.4
CTNND1-236ENST00000533667 BCANQ96GW7 911 aa9.66□□□□□ -0.86
CTNND1-236ENST00000533667 ZNF326Q5BKZ1 582 aaKnown RBP9.65□□□□□ -0.86
CTNND1-236ENST00000533667 DCAF1Q9Y4B6 1507 aa9.63□□□□□ -0.87
CTNND1-236ENST00000533667 NEFMP07197 916 aa9.63□□□□□ -0.87
CTNND1-236ENST00000533667 ANP32AP39687 249 aaKnown RBP9.62□□□□□ -0.87
CTNND1-236ENST00000533667 CANXP27824 592 aaKnown RBP9.62□□□□□ -0.87
CTNND1-236ENST00000533667 BCL11AQ9H165 835 aa9.59□□□□□ -0.87
CTNND1-236ENST00000533667 EIF5BO60841 1220 aaKnown RBP9.58□□□□□ -0.88
CTNND1-236ENST00000533667 TONSLQ96HA7 1378 aa9.55□□□□□ -0.88
CTNND1-236ENST00000533667 FBLN2P98095 1184 aa9.54□□□□□ -0.88
CTNND1-236ENST00000533667 ZCCHC6Q5VYS8 1495 aaKnown RBP9.53□□□□□ -0.88
CTNND1-236ENST00000533667 P3H3Q8IVL6 736 aa9.51□□□□□ -0.89
CTNND1-236ENST00000533667 ANP32BQ92688 251 aaKnown RBP9.48□□□□□ -0.89
CTNND1-236ENST00000533667 FKBP8Q14318 412 aa9.48□□□□□ -0.89
CTNND1-236ENST00000533667 UPF2Q9HAU5 1272 aaKnown RBP9.48□□□□□ -0.89
CTNND1-236ENST00000533667 ZNF777Q9ULD5 760 aaPredicted RBP9.47□□□□□ -0.89
CTNND1-236ENST00000533667 SCRIBQ14160 1630 aa9.47□□□□□ -0.89
CTNND1-236ENST00000533667 HNRNPUQ00839 825 aaKnown RBP eCLIP9.46□□□□□ -0.9
CTNND1-236ENST00000533667 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.44□□□□□ -0.9
CTNND1-236ENST00000533667 NPM2Q86SE8 214 aaKnown RBP9.43□□□□□ -0.9
CTNND1-236ENST00000533667 ANP32EQ9BTT0 268 aa9.43□□□□□ -0.9
CTNND1-236ENST00000533667 DDX10Q13206 875 aaKnown RBP9.42□□□□□ -0.9
CTNND1-236ENST00000533667 EEA1Q15075 1411 aa9.42□□□□□ -0.9
CTNND1-236ENST00000533667 ARID3CA6NKF2 412 aa9.41□□□□□ -0.9
CTNND1-236ENST00000533667 HSP90AA1P07900 732 aaKnown RBP9.41□□□□□ -0.9
CTNND1-236ENST00000533667 CCDC180Q9P1Z9 1646 aa9.41□□□□□ -0.9
CTNND1-236ENST00000533667 TMC1Q8TDI8 760 aa9.4□□□□□ -0.91
CTNND1-236ENST00000533667 FAM9BQ8IZU0 186 aa9.39□□□□□ -0.91
CTNND1-236ENST00000533667 CCDC136Q96JN2 1154 aa9.39□□□□□ -0.91
CTNND1-236ENST00000533667 ESF1Q9H501 851 aaKnown RBP9.39□□□□□ -0.91
CTNND1-236ENST00000533667 CLIP1P30622 1438 aa9.37□□□□□ -0.91
CTNND1-236ENST00000533667 MTUS2Q5JR59 1369 aa9.36□□□□□ -0.91
CTNND1-236ENST00000533667 TSPY4P0CV99 314 aa9.36□□□□□ -0.91
CTNND1-236ENST00000533667 TSPY10P0CW01 314 aa9.36□□□□□ -0.91
CTNND1-236ENST00000533667 WDR43Q15061 677 aaKnown RBP eCLIP9.36□□□□□ -0.913e-9■■■□□ 15.6
CTNND1-236ENST00000533667 PRKCSHP14314 528 aaPredicted RBP9.35□□□□□ -0.91
CTNND1-236ENST00000533667 MRS2Q9HD23 443 aa9.35□□□□□ -0.91
CTNND1-236ENST00000533667 STAG3Q9UJ98 1225 aa9.35□□□□□ -0.91
CTNND1-236ENST00000533667 NPM1P06748 294 aaKnown RBP eCLIP9.34□□□□□ -0.91
CTNND1-236ENST00000533667 CHGAP10645 457 aaKnown RBP9.33□□□□□ -0.92
CTNND1-236ENST00000533667 GOLGA3Q08378 1498 aa9.33□□□□□ -0.92
CTNND1-236ENST00000533667 RSF1Q96T23 1441 aaPredicted RBP9.33□□□□□ -0.92
CTNND1-236ENST00000533667 EIF4G2P78344 907 aaKnown RBP eCLIP9.33□□□□□ -0.92
CTNND1-236ENST00000533667 CHIC2Q9UKJ5 165 aa9.31□□□□□ -0.92
CTNND1-236ENST00000533667 MIER1Q8N108 512 aa9.3□□□□□ -0.92
CTNND1-236ENST00000533667 DDRGK1Q96HY6 314 aa9.3□□□□□ -0.92
CTNND1-236ENST00000533667 SCAF1Q9H7N4 1312 aaKnown RBP9.29□□□□□ -0.92
CTNND1-236ENST00000533667 CEP162Q5TB80 1403 aa9.28□□□□□ -0.92
CTNND1-236ENST00000533667 MYH16Q9H6N6 1097 aa9.27□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms