RNA–Protein interactions for RNA: ENST00000490140.1

FDPS-215, Transcript of farnesyl diphosphate synthase, humanhuman

TSL 2

Gene FDPS, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FDPS-215ENST00000490140 NISCHQ9Y2I1 1504 aa29.56■■■□□ 2.32
FDPS-215ENST00000490140 CCDC180Q9P1Z9 1646 aa26.68■■□□□ 1.86
FDPS-215ENST00000490140 ABCC9O60706 1549 aa26.62■■□□□ 1.85
FDPS-215ENST00000490140 RB1CC1Q8TDY2 1594 aa25.43■■□□□ 1.66
FDPS-215ENST00000490140 NACADO15069 1562 aa25.22■■□□□ 1.63
FDPS-215ENST00000490140 DCAF8L2P0C7V8 631 aa24.93■■□□□ 1.58
FDPS-215ENST00000490140 DNAJC5BQ9UF47 199 aa24.89■■□□□ 1.58
FDPS-215ENST00000490140 MYO15BQ96JP2 1530 aa24.87■■□□□ 1.57
FDPS-215ENST00000490140 UNC13AQ9UPW8 1703 aa24.75■■□□□ 1.55
FDPS-215ENST00000490140 PABPN1Q86U42 306 aaKnown RBP eCLIP24.7■■□□□ 1.542e-8■□□□□ 9.5
FDPS-215ENST00000490140 BICRAQ9NZM4 1560 aa24.55■■□□□ 1.52
FDPS-215ENST00000490140 ZCCHC6Q5VYS8 1495 aaKnown RBP24.51■■□□□ 1.51
FDPS-215ENST00000490140 DCAF1Q9Y4B6 1507 aa24.5■■□□□ 1.51
FDPS-215ENST00000490140 SHROOM4Q9ULL8 1493 aa24.45■■□□□ 1.5
FDPS-215ENST00000490140 SCRIBQ14160 1630 aa24.21■■□□□ 1.47
FDPS-215ENST00000490140 CC2D2AQ9P2K1 1620 aa24.08■■□□□ 1.45
FDPS-215ENST00000490140 CECR2Q9BXF3 1484 aa24.05■■□□□ 1.44
FDPS-215ENST00000490140 EIF4G1Q04637 1599 aaKnown RBP24.03■■□□□ 1.44
FDPS-215ENST00000490140 NCAPD3P42695 1498 aa23.24■■□□□ 1.31
FDPS-215ENST00000490140 SMARCA2P51531 1590 aa23.15■■□□□ 1.3
FDPS-215ENST00000490140 ATAD2BQ9ULI0 1458 aa23.12■■□□□ 1.29
FDPS-215ENST00000490140 HMGXB3Q12766 1538 aa23.12■■□□□ 1.29
FDPS-215ENST00000490140 CUX2O14529 1486 aa23.11■■□□□ 1.29
FDPS-215ENST00000490140 SMARCA4P51532 1647 aa23.11■■□□□ 1.29
FDPS-215ENST00000490140 ERCC6Q03468 1493 aa23.11■■□□□ 1.29
FDPS-215ENST00000490140 DNAJC5Q9H3Z4 198 aa23.08■■□□□ 1.29
FDPS-215ENST00000490140 BAZ1AQ9NRL2 1556 aaPredicted RBP23.03■■□□□ 1.28
FDPS-215ENST00000490140 BAZ1BQ9UIG0 1483 aaKnown RBP22.96■■□□□ 1.27
FDPS-215ENST00000490140 PEG3Q9GZU2 1588 aa22.92■■□□□ 1.26
FDPS-215ENST00000490140 NESP48681 1621 aa22.8■■□□□ 1.24
FDPS-215ENST00000490140 LAMC3Q9Y6N6 1575 aa22.79■■□□□ 1.24
FDPS-215ENST00000490140 MROH2BQ7Z745 1585 aa22.72■■□□□ 1.23
FDPS-215ENST00000490140 THOC2Q8NI27 1593 aaKnown RBP22.68■■□□□ 1.22
FDPS-215ENST00000490140 PDS5BQ9NTI5 1447 aa22.65■■□□□ 1.22
FDPS-215ENST00000490140 KIF21AQ7Z4S6 1674 aa22.58■■□□□ 1.21
FDPS-215ENST00000490140 CADPSQ9ULU8 1353 aa22.51■■□□□ 1.19
FDPS-215ENST00000490140 WIZO95785 1651 aa22.46■■□□□ 1.19
FDPS-215ENST00000490140 MRC2Q9UBG0 1479 aa22.44■■□□□ 1.18
FDPS-215ENST00000490140 WDR62O43379 1518 aa22.38■■□□□ 1.17
FDPS-215ENST00000490140 CEP164Q9UPV0 1460 aa22.35■■□□□ 1.17
FDPS-215ENST00000490140 FANCD2Q9BXW9 1451 aa22.28■■□□□ 1.16
FDPS-215ENST00000490140 TOP2AP11388 1531 aaKnown RBP22.26■■□□□ 1.15
FDPS-215ENST00000490140 CFTRP13569 1480 aa22.24■■□□□ 1.15
FDPS-215ENST00000490140 RSF1Q96T23 1441 aaPredicted RBP22.23■■□□□ 1.15
FDPS-215ENST00000490140 PRDM2Q13029 1718 aa22.1■■□□□ 1.13
FDPS-215ENST00000490140 URB2Q14146 1524 aaKnown RBP22.04■■□□□ 1.12
FDPS-215ENST00000490140 TRIM41Q8WV44 630 aa22.02■■□□□ 1.12
FDPS-215ENST00000490140 OSCARQ8IYS5 282 aa21.97■■□□□ 1.11
FDPS-215ENST00000490140 CCDC88BA6NC98 1476 aa21.91■■□□□ 1.1
FDPS-215ENST00000490140 IFT140Q96RY7 1462 aa21.9■■□□□ 1.1
FDPS-215ENST00000490140 ABCC8Q09428 1581 aa21.88■■□□□ 1.09
FDPS-215ENST00000490140 TOPBP1Q92547 1522 aa21.82■■□□□ 1.08
FDPS-215ENST00000490140 DNMBPQ6XZF7 1577 aa21.78■■□□□ 1.08
FDPS-215ENST00000490140 ZNF608Q9ULD9 1512 aaPredicted RBP21.75■■□□□ 1.07
FDPS-215ENST00000490140 EIF4G3O43432 1585 aaKnown RBP21.73■■□□□ 1.07
FDPS-215ENST00000490140 RIMBP3CA6NJZ7 1639 aa21.68■■□□□ 1.06
FDPS-215ENST00000490140 RIMBP3BA6NNM3 1639 aa21.68■■□□□ 1.06
FDPS-215ENST00000490140 RIMBP3Q9UFD9 1639 aa21.68■■□□□ 1.06
FDPS-215ENST00000490140 TARBP1Q13395 1621 aaKnown RBP21.62■■□□□ 1.05
FDPS-215ENST00000490140 ARHGEF11O15085 1522 aa21.62■■□□□ 1.05
FDPS-215ENST00000490140 POLA1P09884 1462 aaPredicted RBP21.59■■□□□ 1.05
FDPS-215ENST00000490140 CHD1O14646 1710 aa21.56■■□□□ 1.04
FDPS-215ENST00000490140 WDR97A6NE52 1622 aa21.55■■□□□ 1.04
FDPS-215ENST00000490140 AQRO60306 1485 aaKnown RBP eCLIP21.55■■□□□ 1.042e-9■■■■■ 29.9
FDPS-215ENST00000490140 SOGA1O94964 1423 aa21.49■■□□□ 1.03
FDPS-215ENST00000490140 FBLN2P98095 1184 aa21.47■■□□□ 1.03
FDPS-215ENST00000490140 FGD5Q6ZNL6 1462 aa21.45■■□□□ 1.02
FDPS-215ENST00000490140 RAD54L2Q9Y4B4 1467 aa21.45■■□□□ 1.02
FDPS-215ENST00000490140 TDRD9Q8NDG6 1382 aaKnown RBP21.41■■□□□ 1.02
FDPS-215ENST00000490140 MAGI1Q96QZ7 1491 aaPredicted RBP21.4■■□□□ 1.02
FDPS-215ENST00000490140 CYB5RLQ6IPT4 315 aa21.4■■□□□ 1.02
FDPS-215ENST00000490140 SNAPC4Q5SXM2 1469 aa21.39■■□□□ 1.02
FDPS-215ENST00000490140 CUX1P39880 1505 aa21.38■■□□□ 1.01
FDPS-215ENST00000490140 SYNJ1O43426 1573 aa21.37■■□□□ 1.01
FDPS-215ENST00000490140 GRIN2BQ13224 1484 aa21.37■■□□□ 1.01
FDPS-215ENST00000490140 ARAP1Q96P48 1450 aa21.37■■□□□ 1.01
FDPS-215ENST00000490140 CHMP7Q8WUX9 453 aaPredicted RBP21.34■■□□□ 1.01
FDPS-215ENST00000490140 CLASP1Q7Z460 1538 aa21.32■■□□□ 1
FDPS-215ENST00000490140 SYNJ2O15056 1496 aa21.32■■□□□ 1
FDPS-215ENST00000490140 PBRM1Q86U86 1689 aa21.27■■□□□ 1
FDPS-215ENST00000490140 GAPVD1Q14C86 1478 aa21.26■□□□□ 0.99
FDPS-215ENST00000490140 TRHP20396 242 aaPredicted RBP21.25■□□□□ 0.99
FDPS-215ENST00000490140 ABCA10Q8WWZ4 1543 aa21.22■□□□□ 0.99
FDPS-215ENST00000490140 ABCA5Q8WWZ7 1642 aa21.2■□□□□ 0.98
FDPS-215ENST00000490140 WRNQ14191 1432 aaPredicted RBP eCLIP21.15■□□□□ 0.98
FDPS-215ENST00000490140 SUPT5HO00267 1087 aaKnown RBP21.14■□□□□ 0.97
FDPS-215ENST00000490140 TOP2BQ02880 1626 aa21.07■□□□□ 0.96
FDPS-215ENST00000490140 BIVM-ERCC5R4GMW8 1640 aa21.07■□□□□ 0.96
FDPS-215ENST00000490140 GRIN2AQ12879 1464 aa21.07■□□□□ 0.96
FDPS-215ENST00000490140 ADAMTS12P58397 1594 aa21.06■□□□□ 0.96
FDPS-215ENST00000490140 FHAD1B1AJZ9 1412 aa21■□□□□ 0.95
FDPS-215ENST00000490140 ERICH3Q5RHP9 1530 aa20.99■□□□□ 0.95
FDPS-215ENST00000490140 NUP160Q12769 1436 aa20.99■□□□□ 0.95
FDPS-215ENST00000490140 CEP170Q5SW79 1584 aa20.96■□□□□ 0.95
FDPS-215ENST00000490140 SHROOM2Q13796 1616 aa20.93■□□□□ 0.94
FDPS-215ENST00000490140 ERCC6L2Q5T890 1561 aa20.87■□□□□ 0.93
FDPS-215ENST00000490140 PRG4Q92954 1404 aaPredicted RBP20.78■□□□□ 0.92
FDPS-215ENST00000490140 RUSC2Q8N2Y8 1516 aa20.77■□□□□ 0.92
FDPS-215ENST00000490140 AEBP2Q6ZN18 517 aaPredicted RBP20.76■□□□□ 0.91
FDPS-215ENST00000490140 JPH4Q96JJ6 628 aa20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 132.1 ms