RNA–Protein interactions for RNA: ENST00000532463.5

CTNND1-231, Transcript of catenin delta 1, human

TSL 1 (best) BASIC

Gene CTNND1, Length 5,749 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNND1-231	ENST00000532463	PELP1	Q8IZL8	1130 aa	Known RBP	13.71	□□□□□ -0.22
CTNND1-231	ENST00000532463	MYT1	Q01538	1121 aa		13.16	□□□□□ -0.3
CTNND1-231	ENST00000532463	ERICH6	Q7L0X2	663 aa		13.14	□□□□□ -0.31
CTNND1-231	ENST00000532463	CCER1	Q8TC90	406 aa	Predicted RBP	13.04	□□□□□ -0.32
CTNND1-231	ENST00000532463	DCAF8L2	P0C7V8	631 aa		12.83	□□□□□ -0.36
CTNND1-231	ENST00000532463	CENPB	P07199	599 aa	Predicted RBP	12.69	□□□□□ -0.38
CTNND1-231	ENST00000532463	YTHDC1	Q96MU7	727 aa	Known RBP	12.61	□□□□□ -0.39
CTNND1-231	ENST00000532463	TTBK1	Q5TCY1	1321 aa	Predicted RBP	12.51	□□□□□ -0.41
CTNND1-231	ENST00000532463	NEFL	P07196	543 aa		12.47	□□□□□ -0.41
CTNND1-231	ENST00000532463	SUPT5H	O00267	1087 aa	Known RBP	12.44	□□□□□ -0.42
CTNND1-231	ENST00000532463	APLP2	Q06481	763 aa		12.43	□□□□□ -0.42
CTNND1-231	ENST00000532463	DAXX	Q9UER7	740 aa	Predicted RBP	12.37	□□□□□ -0.43
CTNND1-231	ENST00000532463	EHMT2	Q96KQ7	1210 aa		12.27	□□□□□ -0.44
CTNND1-231	ENST00000532463	ZEB1	P37275	1124 aa	Predicted RBP	12.24	□□□□□ -0.45
CTNND1-231	ENST00000532463	FAM9A	Q8IZU1	332 aa	Predicted RBP	12.19	□□□□□ -0.46
CTNND1-231	ENST00000532463	RTL5	Q5HYW3	569 aa	Predicted RBP	12.14	□□□□□ -0.47
CTNND1-231	ENST00000532463	PCGF6	Q9BYE7	350 aa		12.13	□□□□□ -0.47
CTNND1-231	ENST00000532463	SHROOM4	Q9ULL8	1493 aa		12.07	□□□□□ -0.48
CTNND1-231	ENST00000532463	ZNF316	A6NFI3	1004 aa	Predicted RBP	12	□□□□□ -0.49
CTNND1-231	ENST00000532463	GLIPR1L2	Q4G1C9	344 aa		11.83	□□□□□ -0.52
CTNND1-231	ENST00000532463	CLSPN	Q9HAW4	1339 aa		11.81	□□□□□ -0.52
CTNND1-231	ENST00000532463	EIF5B	O60841	1220 aa	Known RBP	11.71	□□□□□ -0.53
CTNND1-231	ENST00000532463	ATP1B4	Q9UN42	357 aa	Predicted RBP	11.68	□□□□□ -0.54
CTNND1-231	ENST00000532463	NISCH	Q9Y2I1	1504 aa		11.62	□□□□□ -0.55
CTNND1-231	ENST00000532463	RANGAP1	P46060	587 aa	Predicted RBP	11.61	□□□□□ -0.55
CTNND1-231	ENST00000532463	POLR3GL	Q9BT43	218 aa		11.6	□□□□□ -0.55
CTNND1-231	ENST00000532463	ANP32B	Q92688	251 aa	Known RBP	11.55	□□□□□ -0.56
CTNND1-231	ENST00000532463	ZBTB47	Q9UFB7	747 aa	Predicted RBP	11.53	□□□□□ -0.56
CTNND1-231	ENST00000532463	CDK11A	Q9UQ88	783 aa	Predicted RBP	11.51	□□□□□ -0.57
CTNND1-231	ENST00000532463	HRC	P23327	699 aa		11.51	□□□□□ -0.57
CTNND1-231	ENST00000532463	PPARGC1B	Q86YN6	1023 aa	Known RBP	11.46	□□□□□ -0.58
CTNND1-231	ENST00000532463	UBTF	P17480	764 aa	Known RBP	11.45	□□□□□ -0.58
CTNND1-231	ENST00000532463	CNGB1	Q14028	1251 aa	Predicted RBP	11.44	□□□□□ -0.58
CTNND1-231	ENST00000532463	MYT1L	Q9UL68	1186 aa		11.41	□□□□□ -0.58
CTNND1-231	ENST00000532463	ANP32A	P39687	249 aa	Known RBP	11.41	□□□□□ -0.58
CTNND1-231	ENST00000532463	SLC4A1AP	Q9BWU0	796 aa	Known RBP	11.4	□□□□□ -0.58
CTNND1-231	ENST00000532463	TRIM41	Q8WV44	630 aa		11.4	□□□□□ -0.58
CTNND1-231	ENST00000532463	TRIM26	Q12899	539 aa	Predicted RBP	11.37	□□□□□ -0.59
CTNND1-231	ENST00000532463	BCAN	Q96GW7	911 aa		11.35	□□□□□ -0.59
CTNND1-231	ENST00000532463	TNNT2	P45379	298 aa	Predicted RBP	11.35	□□□□□ -0.59
CTNND1-231	ENST00000532463	DIEXF	Q68CQ4	756 aa	Known RBP	11.3	□□□□□ -0.6
CTNND1-231	ENST00000532463	GTF3C3	Q9Y5Q9	886 aa		11.29	□□□□□ -0.6
CTNND1-231	ENST00000532463	CANX	P27824	592 aa	Known RBP	11.26	□□□□□ -0.61
CTNND1-231	ENST00000532463	HSP90AA1	P07900	732 aa	Known RBP	11.25	□□□□□ -0.61
CTNND1-231	ENST00000532463	CDK11B	P21127	795 aa	Known RBP	11.24	□□□□□ -0.61
CTNND1-231	ENST00000532463	ITGAE	P38570	1179 aa		11.24	□□□□□ -0.61
CTNND1-231	ENST00000532463	NPM2	Q86SE8	214 aa	Known RBP	11.21	□□□□□ -0.61
CTNND1-231	ENST00000532463	BCL11A	Q9H165	835 aa		11.2	□□□□□ -0.62
CTNND1-231	ENST00000532463	UPF2	Q9HAU5	1272 aa	Known RBP	11.17	□□□□□ -0.62
CTNND1-231	ENST00000532463	NEFM	P07197	916 aa		11.17	□□□□□ -0.62
CTNND1-231	ENST00000532463	TRIM44	Q96DX7	344 aa	Predicted RBP	11.16	□□□□□ -0.62
CTNND1-231	ENST00000532463	ANP32C	O43423	234 aa		11.15	□□□□□ -0.62
CTNND1-231	ENST00000532463	LOC105371045	A0A1W2PR82	267 aa		11.14	□□□□□ -0.63
CTNND1-231	ENST00000532463	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	11.14	□□□□□ -0.63
CTNND1-231	ENST00000532463	HNRNPUL2	Q1KMD3	747 aa	Known RBP	11.14	□□□□□ -0.63
CTNND1-231	ENST00000532463	CHIC1	Q5VXU3	224 aa		11.12	□□□□□ -0.63
CTNND1-231	ENST00000532463	SLC24A1	O60721	1099 aa		11.12	□□□□□ -0.63
CTNND1-231	ENST00000532463	ARX	Q96QS3	562 aa		11.06	□□□□□ -0.64
CTNND1-231	ENST00000532463	NBR1	Q14596	966 aa		11.05	□□□□□ -0.64
CTNND1-231	ENST00000532463	ANP32E	Q9BTT0	268 aa		11.03	□□□□□ -0.64
CTNND1-231	ENST00000532463	NCL	P19338	710 aa	Known RBP	11.02	□□□□□ -0.64
CTNND1-231	ENST00000532463	ACIN1	Q9UKV3	1341 aa	Known RBP	11	□□□□□ -0.65
CTNND1-231	ENST00000532463	ERICH6B	Q5W0A0	696 aa		10.99	□□□□□ -0.65
CTNND1-231	ENST00000532463	DNTTIP2	Q5QJE6	756 aa	Known RBP	10.95	□□□□□ -0.66
CTNND1-231	ENST00000532463	PTMA	P06454	111 aa	Known RBP	10.93	□□□□□ -0.66
CTNND1-231	ENST00000532463	TRIM52	Q96A61	297 aa		10.93	□□□□□ -0.66
CTNND1-231	ENST00000532463	NAP1L5	Q96NT1	182 aa	Predicted RBP	10.93	□□□□□ -0.66
CTNND1-231	ENST00000532463	GOLGA6L22	H0YM25	854 aa		10.91	□□□□□ -0.66
CTNND1-231	ENST00000532463	AMER1	Q5JTC6	1135 aa	Predicted RBP	10.91	□□□□□ -0.66
CTNND1-231	ENST00000532463	FKBP8	Q14318	412 aa		10.91	□□□□□ -0.66
CTNND1-231	ENST00000532463	NEUROD1	Q13562	356 aa		10.9	□□□□□ -0.66
CTNND1-231	ENST00000532463	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	10.89	□□□□□ -0.67
CTNND1-231	ENST00000532463	ZNF326	Q5BKZ1	582 aa	Known RBP	10.88	□□□□□ -0.67
CTNND1-231	ENST00000532463	ZRSR1	Q15695	479 aa	Known RBP	10.88	□□□□□ -0.67
CTNND1-231	ENST00000532463	BECN1	Q14457	450 aa		10.86	□□□□□ -0.67
CTNND1-231	ENST00000532463	DDRGK1	Q96HY6	314 aa		10.85	□□□□□ -0.67
CTNND1-231	ENST00000532463	CCDC136	Q96JN2	1154 aa		10.84	□□□□□ -0.67
CTNND1-231	ENST00000532463	FAM50A	Q14320	339 aa	Known RBP	10.84	□□□□□ -0.67
CTNND1-231	ENST00000532463	CALR	P27797	417 aa	Known RBP	10.82	□□□□□ -0.68
CTNND1-231	ENST00000532463	TNNT3	P45378	269 aa	Predicted RBP	10.81	□□□□□ -0.68
CTNND1-231	ENST00000532463	GOLGA6L6	A8MZA4	724 aa		10.8	□□□□□ -0.68
CTNND1-231	ENST00000532463	NRDC	O43847	1150 aa		10.8	□□□□□ -0.68
CTNND1-231	ENST00000532463	CHAF1A	Q13111	956 aa	Predicted RBP	10.78	□□□□□ -0.68
CTNND1-231	ENST00000532463	PPM1G	O15355	546 aa	Predicted RBP	10.76	□□□□□ -0.69
CTNND1-231	ENST00000532463	MYH16	Q9H6N6	1097 aa		10.75	□□□□□ -0.69
CTNND1-231	ENST00000532463	L1TD1	Q5T7N2	865 aa	Known RBP	10.75	□□□□□ -0.69
CTNND1-231	ENST00000532463	RTN4	Q9NQC3	1192 aa	Known RBP	10.74	□□□□□ -0.69
CTNND1-231	ENST00000532463	HNRNPU	Q00839	825 aa	Known RBP eCLIP	10.73	□□□□□ -0.69
CTNND1-231	ENST00000532463	PLCB2	Q00722	1185 aa		10.69	□□□□□ -0.7
CTNND1-231	ENST00000532463	MSN	P26038	577 aa	Known RBP	10.67	□□□□□ -0.7
CTNND1-231	ENST00000532463	TULP1	O00294	542 aa	Predicted RBP	10.65	□□□□□ -0.7
CTNND1-231	ENST00000532463	FAM9B	Q8IZU0	186 aa		10.64	□□□□□ -0.71
CTNND1-231	ENST00000532463	SCAF1	Q9H7N4	1312 aa	Known RBP	10.64	□□□□□ -0.71
CTNND1-231	ENST00000532463	PNN	Q9H307	717 aa	Known RBP	10.63	□□□□□ -0.71
CTNND1-231	ENST00000532463	CASC1	Q6TDU7	716 aa		10.62	□□□□□ -0.71
CTNND1-231	ENST00000532463	PTMS	P20962	102 aa		10.62	□□□□□ -0.71
CTNND1-231	ENST00000532463	SET	Q01105	290 aa	Predicted RBP	10.6	□□□□□ -0.71
CTNND1-231	ENST00000532463	NOC3L	Q8WTT2	800 aa	Known RBP	10.6	□□□□□ -0.71
CTNND1-231	ENST00000532463	SALL2	Q9Y467	1007 aa	Predicted RBP	10.6	□□□□□ -0.71
CTNND1-231	ENST00000532463	WDR43	Q15061	677 aa	Known RBP eCLIP	10.59	□□□□□ -0.71	3e-9	■■■□□ 15.6

Retrieved 100 of 20,778 RNA–protein pairs in 600.9 ms