RNA–Protein interactions for RNA: ENST00000473212.1

COL18A1-207, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 2,515 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-207ENST00000473212 NISCHQ9Y2I1 1504 aa43.29■■■■■ 4.52
COL18A1-207ENST00000473212 SHROOM4Q9ULL8 1493 aa37.42■■■■□ 3.58
COL18A1-207ENST00000473212 SUPT5HO00267 1087 aaKnown RBP36.7■■■■□ 3.47
COL18A1-207ENST00000473212 ZCCHC6Q5VYS8 1495 aaKnown RBP36.63■■■■□ 3.45
COL18A1-207ENST00000473212 CCDC180Q9P1Z9 1646 aa36.53■■■■□ 3.44
COL18A1-207ENST00000473212 DCAF8L2P0C7V8 631 aa36.22■■■■□ 3.39
COL18A1-207ENST00000473212 MYO15BQ96JP2 1530 aa35.65■■■■□ 3.3
COL18A1-207ENST00000473212 CHIC1Q5VXU3 224 aa35.62■■■■□ 3.29
COL18A1-207ENST00000473212 DCAF1Q9Y4B6 1507 aa35.29■■■■□ 3.24
COL18A1-207ENST00000473212 HRCP23327 699 aa34.93■■■■□ 3.18
COL18A1-207ENST00000473212 PCGF6Q9BYE7 350 aa34.78■■■■□ 3.16
COL18A1-207ENST00000473212 LOC105371045A0A1W2PR82 267 aa34.76■■■■□ 3.16
COL18A1-207ENST00000473212 SCRIBQ14160 1630 aa34.61■■■■□ 3.13
COL18A1-207ENST00000473212 ABCC9O60706 1549 aa34.58■■■■□ 3.13
COL18A1-207ENST00000473212 RSF1Q96T23 1441 aaPredicted RBP34.4■■■■□ 3.1
COL18A1-207ENST00000473212 PPARGC1BQ86YN6 1023 aaKnown RBP34.29■■■■□ 3.08
COL18A1-207ENST00000473212 RB1CC1Q8TDY2 1594 aa34.14■■■■□ 3.06
COL18A1-207ENST00000473212 TRIM41Q8WV44 630 aa34.01■■■■□ 3.03
COL18A1-207ENST00000473212 FAM9AQ8IZU1 332 aaPredicted RBP33.98■■■■□ 3.03
COL18A1-207ENST00000473212 CECR2Q9BXF3 1484 aa33.96■■■■□ 3.03
COL18A1-207ENST00000473212 TRIM26Q12899 539 aaPredicted RBP33.92■■■■□ 3.02
COL18A1-207ENST00000473212 EHMT2Q96KQ7 1210 aa33.87■■■■□ 3.01
COL18A1-207ENST00000473212 MROH2BQ7Z745 1585 aa33.79■■■■□ 3
COL18A1-207ENST00000473212 NACADO15069 1562 aa33.78■■■■□ 3
COL18A1-207ENST00000473212 WIZO95785 1651 aa33.64■■■□□ 2.98
COL18A1-207ENST00000473212 ZEB1P37275 1124 aaPredicted RBP33.3■■■□□ 2.92
COL18A1-207ENST00000473212 BAZ1AQ9NRL2 1556 aaPredicted RBP33.26■■■□□ 2.91
COL18A1-207ENST00000473212 EIF4G1Q04637 1599 aaKnown RBP33.13■■■□□ 2.89
COL18A1-207ENST00000473212 ABCC8Q09428 1581 aa33.02■■■□□ 2.88
COL18A1-207ENST00000473212 SMARCA4P51532 1647 aa32.94■■■□□ 2.86
COL18A1-207ENST00000473212 UNC13AQ9UPW8 1703 aa32.94■■■□□ 2.86
COL18A1-207ENST00000473212 TOP2AP11388 1531 aaKnown RBP32.93■■■□□ 2.86
COL18A1-207ENST00000473212 CCDC88BA6NC98 1476 aa32.93■■■□□ 2.86
COL18A1-207ENST00000473212 SMARCA2P51531 1590 aa32.84■■■□□ 2.85
COL18A1-207ENST00000473212 PABPN1Q86U42 306 aaKnown RBP eCLIP32.79■■■□□ 2.842e-15■■□□□ 14.3
COL18A1-207ENST00000473212 TTBK1Q5TCY1 1321 aaPredicted RBP32.78■■■□□ 2.84
COL18A1-207ENST00000473212 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.73■■■□□ 2.83
COL18A1-207ENST00000473212 SOGA1O94964 1423 aa32.72■■■□□ 2.83
COL18A1-207ENST00000473212 RUSC2Q8N2Y8 1516 aa32.62■■■□□ 2.81
COL18A1-207ENST00000473212 CEP162Q5TB80 1403 aa32.54■■■□□ 2.8
COL18A1-207ENST00000473212 BICRAQ9NZM4 1560 aa32.51■■■□□ 2.79
COL18A1-207ENST00000473212 CCER1Q8TC90 406 aaPredicted RBP32.5■■■□□ 2.79
COL18A1-207ENST00000473212 SCAF1Q9H7N4 1312 aaKnown RBP32.43■■■□□ 2.78
COL18A1-207ENST00000473212 CSRNP3Q8WYN3 585 aa32.43■■■□□ 2.78
COL18A1-207ENST00000473212 UBTFP17480 764 aaKnown RBP32.41■■■□□ 2.78
COL18A1-207ENST00000473212 WRNQ14191 1432 aaPredicted RBP eCLIP32.38■■■□□ 2.77
COL18A1-207ENST00000473212 TNIKQ9UKE5 1360 aa32.37■■■□□ 2.77
COL18A1-207ENST00000473212 EEA1Q15075 1411 aa32.21■■■□□ 2.75
COL18A1-207ENST00000473212 SYNJ1O43426 1573 aa32.18■■■□□ 2.74
COL18A1-207ENST00000473212 PEG3Q9GZU2 1588 aa32.17■■■□□ 2.74
COL18A1-207ENST00000473212 GOLGA3Q08378 1498 aa32.16■■■□□ 2.74
COL18A1-207ENST00000473212 ATAD2BQ9ULI0 1458 aa32.09■■■□□ 2.73
COL18A1-207ENST00000473212 PELP1Q8IZL8 1130 aaKnown RBP32.08■■■□□ 2.73
COL18A1-207ENST00000473212 DIEXFQ68CQ4 756 aaKnown RBP32.02■■■□□ 2.72
COL18A1-207ENST00000473212 BAZ1BQ9UIG0 1483 aaKnown RBP32■■■□□ 2.71
COL18A1-207ENST00000473212 RANGAP1P46060 587 aaPredicted RBP31.99■■■□□ 2.71
COL18A1-207ENST00000473212 ACIN1Q9UKV3 1341 aaKnown RBP31.99■■■□□ 2.71
COL18A1-207ENST00000473212 NEUROD1Q13562 356 aa31.94■■■□□ 2.7
COL18A1-207ENST00000473212 CEP164Q9UPV0 1460 aa31.94■■■□□ 2.7
COL18A1-207ENST00000473212 HNRNPUL2Q1KMD3 747 aaKnown RBP31.89■■■□□ 2.7
COL18A1-207ENST00000473212 CLIP1P30622 1438 aa31.88■■■□□ 2.69
COL18A1-207ENST00000473212 RAPGEF2Q9Y4G8 1499 aa31.87■■■□□ 2.69
COL18A1-207ENST00000473212 KIF21BO75037 1637 aa31.87■■■□□ 2.69
COL18A1-207ENST00000473212 CENPBP07199 599 aaPredicted RBP31.74■■■□□ 2.67
COL18A1-207ENST00000473212 VPS8Q8N3P4 1428 aa31.71■■■□□ 2.67
COL18A1-207ENST00000473212 ZNF316A6NFI3 1004 aaPredicted RBP31.68■■■□□ 2.66
COL18A1-207ENST00000473212 GTF3C3Q9Y5Q9 886 aa31.66■■■□□ 2.66
COL18A1-207ENST00000473212 TOP2BQ02880 1626 aa31.63■■■□□ 2.65
COL18A1-207ENST00000473212 APLP2Q06481 763 aa31.57■■■□□ 2.65
COL18A1-207ENST00000473212 BIVM-ERCC5R4GMW8 1640 aa31.48■■■□□ 2.63
COL18A1-207ENST00000473212 CUX1P39880 1505 aa31.41■■■□□ 2.62
COL18A1-207ENST00000473212 PRXQ9BXM0 1461 aa31.4■■■□□ 2.62
COL18A1-207ENST00000473212 KANK4Q5T7N3 995 aaPredicted RBP31.38■■■□□ 2.61
COL18A1-207ENST00000473212 ARAP1Q96P48 1450 aa31.38■■■□□ 2.61
COL18A1-207ENST00000473212 YTHDC1Q96MU7 727 aaKnown RBP31.37■■■□□ 2.61
COL18A1-207ENST00000473212 NCAPD3P42695 1498 aa31.34■■■□□ 2.61
COL18A1-207ENST00000473212 MIER1Q8N108 512 aa31.32■■■□□ 2.6
COL18A1-207ENST00000473212 ERICH3Q5RHP9 1530 aa31.3■■■□□ 2.6
COL18A1-207ENST00000473212 HMGXB3Q12766 1538 aa31.29■■■□□ 2.6
COL18A1-207ENST00000473212 KIF27Q86VH2 1401 aa31.21■■■□□ 2.59
COL18A1-207ENST00000473212 CFTRP13569 1480 aa31.18■■■□□ 2.58
COL18A1-207ENST00000473212 DHX57Q6P158 1386 aaKnown RBP31.13■■■□□ 2.57
COL18A1-207ENST00000473212 ARHGAP35Q9NRY4 1499 aa31.09■■■□□ 2.57
COL18A1-207ENST00000473212 ITGAEP38570 1179 aa31.04■■■□□ 2.56
COL18A1-207ENST00000473212 CUX2O14529 1486 aa30.99■■■□□ 2.55
COL18A1-207ENST00000473212 RRBP1Q9P2E9 1410 aaKnown RBP30.97■■■□□ 2.55
COL18A1-207ENST00000473212 CLSPNQ9HAW4 1339 aa30.96■■■□□ 2.55
COL18A1-207ENST00000473212 IGF1RP08069 1367 aa30.95■■■□□ 2.54
COL18A1-207ENST00000473212 CCNB3Q8WWL7 1395 aa30.89■■■□□ 2.54
COL18A1-207ENST00000473212 CADPSQ9ULU8 1353 aa30.83■■■□□ 2.53
COL18A1-207ENST00000473212 FGD5Q6ZNL6 1462 aa30.83■■■□□ 2.53
COL18A1-207ENST00000473212 PRDM2Q13029 1718 aa30.81■■■□□ 2.52
COL18A1-207ENST00000473212 CARMIL1Q5VZK9 1371 aa30.8■■■□□ 2.52
COL18A1-207ENST00000473212 P3H3Q8IVL6 736 aa30.79■■■□□ 2.52
COL18A1-207ENST00000473212 RAB3GAP2Q9H2M9 1393 aa30.7■■■□□ 2.51
COL18A1-207ENST00000473212 CC2D2AQ9P2K1 1620 aa30.7■■■□□ 2.51
COL18A1-207ENST00000473212 TIAM1Q13009 1591 aa30.69■■■□□ 2.5
COL18A1-207ENST00000473212 ATP1B4Q9UN42 357 aaPredicted RBP30.67■■■□□ 2.5
COL18A1-207ENST00000473212 PHLDB1Q86UU1 1377 aa30.65■■■□□ 2.5
COL18A1-207ENST00000473212 RAD54L2Q9Y4B4 1467 aa30.61■■■□□ 2.49
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms