RNA–Protein interactions for RNA: ENST00000530748.5

CTNND1-227, Transcript of catenin delta 1, humanhuman

TSL 1 (best) BASIC

Gene CTNND1, Length 5,925 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNND1-227ENST00000530748 DCAF8L2P0C7V8 631 aa14.61□□□□□ -0.07
CTNND1-227ENST00000530748 NISCHQ9Y2I1 1504 aa14.08□□□□□ -0.15
CTNND1-227ENST00000530748 SUPT5HO00267 1087 aaKnown RBP13.85□□□□□ -0.19
CTNND1-227ENST00000530748 SHROOM4Q9ULL8 1493 aa13.67□□□□□ -0.22
CTNND1-227ENST00000530748 EHMT2Q96KQ7 1210 aa13.42□□□□□ -0.26
CTNND1-227ENST00000530748 PELP1Q8IZL8 1130 aaKnown RBP13.36□□□□□ -0.27
CTNND1-227ENST00000530748 APLP2Q06481 763 aa13.34□□□□□ -0.27
CTNND1-227ENST00000530748 FAM9AQ8IZU1 332 aaPredicted RBP13.21□□□□□ -0.29
CTNND1-227ENST00000530748 TTBK1Q5TCY1 1321 aaPredicted RBP12.99□□□□□ -0.33
CTNND1-227ENST00000530748 PCGF6Q9BYE7 350 aa12.91□□□□□ -0.34
CTNND1-227ENST00000530748 TRIM41Q8WV44 630 aa12.9□□□□□ -0.34
CTNND1-227ENST00000530748 ZEB1P37275 1124 aaPredicted RBP12.9□□□□□ -0.34
CTNND1-227ENST00000530748 RANGAP1P46060 587 aaPredicted RBP12.88□□□□□ -0.35
CTNND1-227ENST00000530748 ATP1B4Q9UN42 357 aaPredicted RBP12.83□□□□□ -0.35
CTNND1-227ENST00000530748 CENPBP07199 599 aaPredicted RBP12.82□□□□□ -0.36
CTNND1-227ENST00000530748 CCER1Q8TC90 406 aaPredicted RBP12.8□□□□□ -0.36
CTNND1-227ENST00000530748 ERICH6Q7L0X2 663 aa12.79□□□□□ -0.36
CTNND1-227ENST00000530748 UBTFP17480 764 aaKnown RBP12.76□□□□□ -0.37
CTNND1-227ENST00000530748 NEFLP07196 543 aa12.59□□□□□ -0.39
CTNND1-227ENST00000530748 YTHDC1Q96MU7 727 aaKnown RBP12.5□□□□□ -0.41
CTNND1-227ENST00000530748 TRIM26Q12899 539 aaPredicted RBP12.47□□□□□ -0.41
CTNND1-227ENST00000530748 PPARGC1BQ86YN6 1023 aaKnown RBP12.44□□□□□ -0.42
CTNND1-227ENST00000530748 MYT1LQ9UL68 1186 aa12.39□□□□□ -0.43
CTNND1-227ENST00000530748 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.38□□□□□ -0.43
CTNND1-227ENST00000530748 HNRNPUL2Q1KMD3 747 aaKnown RBP12.38□□□□□ -0.43
CTNND1-227ENST00000530748 ITGAEP38570 1179 aa12.33□□□□□ -0.44
CTNND1-227ENST00000530748 MYT1Q01538 1121 aa12.33□□□□□ -0.44
CTNND1-227ENST00000530748 POLR3GLQ9BT43 218 aa12.29□□□□□ -0.44
CTNND1-227ENST00000530748 DAXXQ9UER7 740 aaPredicted RBP12.26□□□□□ -0.45
CTNND1-227ENST00000530748 HRCP23327 699 aa12.23□□□□□ -0.45
CTNND1-227ENST00000530748 CHIC1Q5VXU3 224 aa12.21□□□□□ -0.45
CTNND1-227ENST00000530748 LOC105371045A0A1W2PR82 267 aa12.21□□□□□ -0.46
CTNND1-227ENST00000530748 ABCC9O60706 1549 aa12.12□□□□□ -0.47
CTNND1-227ENST00000530748 SLC4A1APQ9BWU0 796 aaKnown RBP12.12□□□□□ -0.47
CTNND1-227ENST00000530748 FAM50AQ14320 339 aaKnown RBP12.09□□□□□ -0.47
CTNND1-227ENST00000530748 CNGB1Q14028 1251 aaPredicted RBP12.08□□□□□ -0.48
CTNND1-227ENST00000530748 PABPN1Q86U42 306 aaKnown RBP eCLIP12.05□□□□□ -0.484e-7■□□□□ 8.4
CTNND1-227ENST00000530748 TRIM52Q96A61 297 aa12.04□□□□□ -0.48
CTNND1-227ENST00000530748 DIEXFQ68CQ4 756 aaKnown RBP12□□□□□ -0.49
CTNND1-227ENST00000530748 ZNF316A6NFI3 1004 aaPredicted RBP12□□□□□ -0.49
CTNND1-227ENST00000530748 CLSPNQ9HAW4 1339 aa11.96□□□□□ -0.5
CTNND1-227ENST00000530748 NEUROD1Q13562 356 aa11.95□□□□□ -0.5
CTNND1-227ENST00000530748 RTL5Q5HYW3 569 aaPredicted RBP11.92□□□□□ -0.5
CTNND1-227ENST00000530748 ANP32CO43423 234 aa11.88□□□□□ -0.51
CTNND1-227ENST00000530748 FBLN2P98095 1184 aa11.85□□□□□ -0.51
CTNND1-227ENST00000530748 ZNF326Q5BKZ1 582 aaKnown RBP11.85□□□□□ -0.51
CTNND1-227ENST00000530748 SCRIBQ14160 1630 aa11.81□□□□□ -0.52
CTNND1-227ENST00000530748 ZBTB47Q9UFB7 747 aaPredicted RBP11.81□□□□□ -0.52
CTNND1-227ENST00000530748 CDK11AQ9UQ88 783 aaPredicted RBP11.76□□□□□ -0.53
CTNND1-227ENST00000530748 CANXP27824 592 aaKnown RBP11.76□□□□□ -0.53
CTNND1-227ENST00000530748 BCANQ96GW7 911 aa11.75□□□□□ -0.53
CTNND1-227ENST00000530748 P3H3Q8IVL6 736 aa11.73□□□□□ -0.53
CTNND1-227ENST00000530748 NEFMP07197 916 aa11.73□□□□□ -0.53
CTNND1-227ENST00000530748 CSRNP3Q8WYN3 585 aa11.72□□□□□ -0.53
CTNND1-227ENST00000530748 GTF3C3Q9Y5Q9 886 aa11.7□□□□□ -0.54
CTNND1-227ENST00000530748 ARID3CA6NKF2 412 aa11.69□□□□□ -0.54
CTNND1-227ENST00000530748 SLC24A1O60721 1099 aa11.69□□□□□ -0.54
CTNND1-227ENST00000530748 ZNF777Q9ULD5 760 aaPredicted RBP11.69□□□□□ -0.54
CTNND1-227ENST00000530748 CCDC180Q9P1Z9 1646 aa11.68□□□□□ -0.54
CTNND1-227ENST00000530748 ZCCHC6Q5VYS8 1495 aaKnown RBP11.67□□□□□ -0.54
CTNND1-227ENST00000530748 ESF1Q9H501 851 aaKnown RBP11.59□□□□□ -0.55
CTNND1-227ENST00000530748 TONSLQ96HA7 1378 aa11.59□□□□□ -0.55
CTNND1-227ENST00000530748 ANP32AP39687 249 aaKnown RBP11.57□□□□□ -0.56
CTNND1-227ENST00000530748 DCAF1Q9Y4B6 1507 aa11.57□□□□□ -0.56
CTNND1-227ENST00000530748 BCL11AQ9H165 835 aa11.57□□□□□ -0.56
CTNND1-227ENST00000530748 STAG3Q9UJ98 1225 aa11.55□□□□□ -0.56
CTNND1-227ENST00000530748 ACIN1Q9UKV3 1341 aaKnown RBP11.54□□□□□ -0.56
CTNND1-227ENST00000530748 CHGAP10645 457 aaKnown RBP11.52□□□□□ -0.57
CTNND1-227ENST00000530748 NPM1P06748 294 aaKnown RBP eCLIP11.52□□□□□ -0.57
CTNND1-227ENST00000530748 RB1CC1Q8TDY2 1594 aa11.51□□□□□ -0.57
CTNND1-227ENST00000530748 NPM2Q86SE8 214 aaKnown RBP11.48□□□□□ -0.57
CTNND1-227ENST00000530748 FKBP8Q14318 412 aa11.44□□□□□ -0.58
CTNND1-227ENST00000530748 UPF2Q9HAU5 1272 aaKnown RBP11.43□□□□□ -0.58
CTNND1-227ENST00000530748 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.43□□□□□ -0.581e-8■■□□□ 13.5
CTNND1-227ENST00000530748 CHIC2Q9UKJ5 165 aa11.42□□□□□ -0.58
CTNND1-227ENST00000530748 HNRNPUQ00839 825 aaKnown RBP eCLIP11.42□□□□□ -0.58
CTNND1-227ENST00000530748 FAM9BQ8IZU0 186 aa11.42□□□□□ -0.58
CTNND1-227ENST00000530748 ANP32BQ92688 251 aaKnown RBP11.42□□□□□ -0.58
CTNND1-227ENST00000530748 MTUS2Q5JR59 1369 aa11.41□□□□□ -0.58
CTNND1-227ENST00000530748 PLPPR3Q6T4P5 718 aa11.41□□□□□ -0.58
CTNND1-227ENST00000530748 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.41□□□□□ -0.58
CTNND1-227ENST00000530748 HSP90AA1P07900 732 aaKnown RBP11.4□□□□□ -0.58
CTNND1-227ENST00000530748 WDR43Q15061 677 aaKnown RBP eCLIP11.4□□□□□ -0.583e-9■■■□□ 15.6
CTNND1-227ENST00000530748 DDX10Q13206 875 aaKnown RBP11.39□□□□□ -0.59
CTNND1-227ENST00000530748 TSPY4P0CV99 314 aa11.38□□□□□ -0.59
CTNND1-227ENST00000530748 TSPY10P0CW01 314 aa11.38□□□□□ -0.59
CTNND1-227ENST00000530748 CHMP7Q8WUX9 453 aaPredicted RBP11.38□□□□□ -0.59
CTNND1-227ENST00000530748 CLIP1P30622 1438 aa11.38□□□□□ -0.59
CTNND1-227ENST00000530748 GOLGA3Q08378 1498 aa11.38□□□□□ -0.59
CTNND1-227ENST00000530748 TMC1Q8TDI8 760 aa11.37□□□□□ -0.59
CTNND1-227ENST00000530748 RSF1Q96T23 1441 aaPredicted RBP11.37□□□□□ -0.59
CTNND1-227ENST00000530748 EEA1Q15075 1411 aa11.35□□□□□ -0.59
CTNND1-227ENST00000530748 NACADO15069 1562 aa11.34□□□□□ -0.59
CTNND1-227ENST00000530748 KDM2AQ9Y2K7 1162 aa11.34□□□□□ -0.59
CTNND1-227ENST00000530748 SALL2Q9Y467 1007 aaPredicted RBP11.32□□□□□ -0.6
CTNND1-227ENST00000530748 CCDC136Q96JN2 1154 aa11.31□□□□□ -0.6
CTNND1-227ENST00000530748 BAZ1BQ9UIG0 1483 aaKnown RBP11.31□□□□□ -0.6
CTNND1-227ENST00000530748 MRS2Q9HD23 443 aa11.3□□□□□ -0.6
CTNND1-227ENST00000530748 MYH16Q9H6N6 1097 aa11.29□□□□□ -0.6
CTNND1-227ENST00000530748 CEP162Q5TB80 1403 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms