RNA–Protein interactions for RNA: ENST00000532245.5

CTNND1-230, Transcript of catenin delta 1, humanhuman

TSL 1 (best) BASIC

Gene CTNND1, Length 5,655 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNND1-230ENST00000532245 DCAF8L2P0C7V8 631 aa14.87□□□□□ -0.03
CTNND1-230ENST00000532245 NISCHQ9Y2I1 1504 aa14.65□□□□□ -0.06
CTNND1-230ENST00000532245 SHROOM4Q9ULL8 1493 aa13.72□□□□□ -0.21
CTNND1-230ENST00000532245 SUPT5HO00267 1087 aaKnown RBP13.66□□□□□ -0.22
CTNND1-230ENST00000532245 EHMT2Q96KQ7 1210 aa13.19□□□□□ -0.3
CTNND1-230ENST00000532245 ABCC9O60706 1549 aa13□□□□□ -0.33
CTNND1-230ENST00000532245 FAM9AQ8IZU1 332 aaPredicted RBP12.87□□□□□ -0.35
CTNND1-230ENST00000532245 PABPN1Q86U42 306 aaKnown RBP eCLIP12.8□□□□□ -0.364e-7■□□□□ 8.4
CTNND1-230ENST00000532245 RANGAP1P46060 587 aaPredicted RBP12.77□□□□□ -0.37
CTNND1-230ENST00000532245 APLP2Q06481 763 aa12.72□□□□□ -0.37
CTNND1-230ENST00000532245 TRIM41Q8WV44 630 aa12.66□□□□□ -0.38
CTNND1-230ENST00000532245 ATP1B4Q9UN42 357 aaPredicted RBP12.62□□□□□ -0.39
CTNND1-230ENST00000532245 TTBK1Q5TCY1 1321 aaPredicted RBP12.62□□□□□ -0.39
CTNND1-230ENST00000532245 UBTFP17480 764 aaKnown RBP12.51□□□□□ -0.41
CTNND1-230ENST00000532245 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.31□□□□□ -0.44
CTNND1-230ENST00000532245 HNRNPUL2Q1KMD3 747 aaKnown RBP12.31□□□□□ -0.44
CTNND1-230ENST00000532245 MYT1LQ9UL68 1186 aa12.24□□□□□ -0.45
CTNND1-230ENST00000532245 SCRIBQ14160 1630 aa12.21□□□□□ -0.45
CTNND1-230ENST00000532245 FBLN2P98095 1184 aa12.2□□□□□ -0.46
CTNND1-230ENST00000532245 CCDC180Q9P1Z9 1646 aa12.18□□□□□ -0.46
CTNND1-230ENST00000532245 PPARGC1BQ86YN6 1023 aaKnown RBP12.17□□□□□ -0.46
CTNND1-230ENST00000532245 PCGF6Q9BYE7 350 aa12.15□□□□□ -0.46
CTNND1-230ENST00000532245 ZCCHC6Q5VYS8 1495 aaKnown RBP12.08□□□□□ -0.48
CTNND1-230ENST00000532245 RB1CC1Q8TDY2 1594 aa12.06□□□□□ -0.48
CTNND1-230ENST00000532245 ITGAEP38570 1179 aa12.04□□□□□ -0.48
CTNND1-230ENST00000532245 CHIC1Q5VXU3 224 aa12.04□□□□□ -0.48
CTNND1-230ENST00000532245 LOC105371045A0A1W2PR82 267 aa12.02□□□□□ -0.49
CTNND1-230ENST00000532245 CCER1Q8TC90 406 aaPredicted RBP11.99□□□□□ -0.49
CTNND1-230ENST00000532245 NACADO15069 1562 aa11.89□□□□□ -0.51
CTNND1-230ENST00000532245 ARID3CA6NKF2 412 aa11.89□□□□□ -0.51
CTNND1-230ENST00000532245 P3H3Q8IVL6 736 aa11.86□□□□□ -0.51
CTNND1-230ENST00000532245 FAM50AQ14320 339 aaKnown RBP11.8□□□□□ -0.52
CTNND1-230ENST00000532245 POLR3GLQ9BT43 218 aa11.73□□□□□ -0.53
CTNND1-230ENST00000532245 CSRNP3Q8WYN3 585 aa11.72□□□□□ -0.53
CTNND1-230ENST00000532245 NPM1P06748 294 aaKnown RBP eCLIP11.71□□□□□ -0.53
CTNND1-230ENST00000532245 CHMP7Q8WUX9 453 aaPredicted RBP11.71□□□□□ -0.53
CTNND1-230ENST00000532245 ERCC6Q03468 1493 aa11.7□□□□□ -0.54
CTNND1-230ENST00000532245 BAZ1BQ9UIG0 1483 aaKnown RBP11.69□□□□□ -0.54
CTNND1-230ENST00000532245 TRIM26Q12899 539 aaPredicted RBP11.69□□□□□ -0.54
CTNND1-230ENST00000532245 TRIM52Q96A61 297 aa11.69□□□□□ -0.54
CTNND1-230ENST00000532245 ZEB1P37275 1124 aaPredicted RBP11.68□□□□□ -0.54
CTNND1-230ENST00000532245 ZNF777Q9ULD5 760 aaPredicted RBP11.67□□□□□ -0.54
CTNND1-230ENST00000532245 PLPPR3Q6T4P5 718 aa11.63□□□□□ -0.55
CTNND1-230ENST00000532245 SLC4A1APQ9BWU0 796 aaKnown RBP11.63□□□□□ -0.55
CTNND1-230ENST00000532245 CNGB1Q14028 1251 aaPredicted RBP11.62□□□□□ -0.55
CTNND1-230ENST00000532245 RSF1Q96T23 1441 aaPredicted RBP11.6□□□□□ -0.55
CTNND1-230ENST00000532245 CDK11AQ9UQ88 783 aaPredicted RBP11.6□□□□□ -0.55
CTNND1-230ENST00000532245 BCANQ96GW7 911 aa11.57□□□□□ -0.56
CTNND1-230ENST00000532245 ESF1Q9H501 851 aaKnown RBP11.56□□□□□ -0.56
CTNND1-230ENST00000532245 CECR2Q9BXF3 1484 aa11.56□□□□□ -0.56
CTNND1-230ENST00000532245 DCAF1Q9Y4B6 1507 aa11.53□□□□□ -0.56
CTNND1-230ENST00000532245 PELP1Q8IZL8 1130 aaKnown RBP11.52□□□□□ -0.57
CTNND1-230ENST00000532245 ZNF326Q5BKZ1 582 aaKnown RBP11.51□□□□□ -0.57
CTNND1-230ENST00000532245 BAZ1AQ9NRL2 1556 aaPredicted RBP11.51□□□□□ -0.57
CTNND1-230ENST00000532245 NEUROD1Q13562 356 aa11.51□□□□□ -0.57
CTNND1-230ENST00000532245 KCNH8Q96L42 1107 aa11.47□□□□□ -0.57
CTNND1-230ENST00000532245 YTHDC1Q96MU7 727 aaKnown RBP11.46□□□□□ -0.57
CTNND1-230ENST00000532245 WRNQ14191 1432 aaPredicted RBP eCLIP11.43□□□□□ -0.58
CTNND1-230ENST00000532245 STAG3Q9UJ98 1225 aa11.42□□□□□ -0.58
CTNND1-230ENST00000532245 CHGAP10645 457 aaKnown RBP11.41□□□□□ -0.58
CTNND1-230ENST00000532245 TRHP20396 242 aaPredicted RBP11.4□□□□□ -0.58
CTNND1-230ENST00000532245 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.38□□□□□ -0.591e-8■■□□□ 13.5
CTNND1-230ENST00000532245 CHIC2Q9UKJ5 165 aa11.37□□□□□ -0.59
CTNND1-230ENST00000532245 MROH2BQ7Z745 1585 aa11.37□□□□□ -0.59
CTNND1-230ENST00000532245 PDS5BQ9NTI5 1447 aa11.37□□□□□ -0.59
CTNND1-230ENST00000532245 CENPBP07199 599 aaPredicted RBP11.36□□□□□ -0.59
CTNND1-230ENST00000532245 SMARCA2P51531 1590 aa11.36□□□□□ -0.59
CTNND1-230ENST00000532245 KIF27Q86VH2 1401 aa11.34□□□□□ -0.59
CTNND1-230ENST00000532245 PLEKHD1A6NEE1 506 aa11.34□□□□□ -0.59
CTNND1-230ENST00000532245 MTUS2Q5JR59 1369 aa11.33□□□□□ -0.6
CTNND1-230ENST00000532245 TSPY4P0CV99 314 aa11.32□□□□□ -0.6
CTNND1-230ENST00000532245 TSPY10P0CW01 314 aa11.32□□□□□ -0.6
CTNND1-230ENST00000532245 ARID4BQ4LE39 1312 aaPredicted RBP11.32□□□□□ -0.6
CTNND1-230ENST00000532245 NEFLP07196 543 aa11.29□□□□□ -0.6
CTNND1-230ENST00000532245 MYO15BQ96JP2 1530 aa11.29□□□□□ -0.6
CTNND1-230ENST00000532245 CCDC88BA6NC98 1476 aa11.28□□□□□ -0.6
CTNND1-230ENST00000532245 CUX2O14529 1486 aa11.28□□□□□ -0.6
CTNND1-230ENST00000532245 SENP3Q9H4L4 574 aaPredicted RBP11.27□□□□□ -0.61
CTNND1-230ENST00000532245 HRCP23327 699 aa11.27□□□□□ -0.61
CTNND1-230ENST00000532245 CLIP1P30622 1438 aa11.27□□□□□ -0.61
CTNND1-230ENST00000532245 TDRD9Q8NDG6 1382 aaKnown RBP11.26□□□□□ -0.61
CTNND1-230ENST00000532245 EIF4G1Q04637 1599 aaKnown RBP11.26□□□□□ -0.61
CTNND1-230ENST00000532245 CADPSQ9ULU8 1353 aa11.24□□□□□ -0.61
CTNND1-230ENST00000532245 ATAD2BQ9ULI0 1458 aa11.23□□□□□ -0.61
CTNND1-230ENST00000532245 SOGA1O94964 1423 aa11.23□□□□□ -0.61
CTNND1-230ENST00000532245 CARMIL1Q5VZK9 1371 aa11.21□□□□□ -0.61
CTNND1-230ENST00000532245 GOLGA3Q08378 1498 aa11.21□□□□□ -0.61
CTNND1-230ENST00000532245 SLC24A1O60721 1099 aa11.21□□□□□ -0.62
CTNND1-230ENST00000532245 EEA1Q15075 1411 aa11.2□□□□□ -0.62
CTNND1-230ENST00000532245 WIZO95785 1651 aa11.2□□□□□ -0.62
CTNND1-230ENST00000532245 CFDP1Q9UEE9 299 aaPredicted RBP11.19□□□□□ -0.62
CTNND1-230ENST00000532245 RRP7BPQ9NSQ0 103 aa11.18□□□□□ -0.62
CTNND1-230ENST00000532245 CEP164Q9UPV0 1460 aa11.17□□□□□ -0.62
CTNND1-230ENST00000532245 TOP2AP11388 1531 aaKnown RBP11.14□□□□□ -0.63
CTNND1-230ENST00000532245 SMARCA4P51532 1647 aa11.14□□□□□ -0.63
CTNND1-230ENST00000532245 PPP1R15AO75807 674 aaPredicted RBP11.14□□□□□ -0.63
CTNND1-230ENST00000532245 ABCC8Q09428 1581 aa11.14□□□□□ -0.63
CTNND1-230ENST00000532245 KDM2AQ9Y2K7 1162 aa11.14□□□□□ -0.63
CTNND1-230ENST00000532245 MLECQ14165 292 aa11.13□□□□□ -0.63
CTNND1-230ENST00000532245 CEP162Q5TB80 1403 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms